data_LMT
#
_chem_comp.id LMT
_chem_comp.name DODECYL-BETA-D-MALTOSIDE
_chem_comp.type D-SACCHARIDE
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H46 O11"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-08-25
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 510.615
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code LMT
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1QLA
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LMT C1B C1* C 0 1 N N R N N N 5.708 -0.018 -24.878 -0.512 0.321 -5.643 C1B LMT 1
LMT C2B C2* C 0 1 N N R N N N 4.562 -1.076 -25.033 -0.460 -0.468 -6.953 C2B LMT 2
LMT C3B C3* C 0 1 N N S N N N 4.524 -1.627 -26.439 0.906 -1.148 -7.074 C3B LMT 3
LMT C4B C4* C 0 1 N N S N N N 4.331 -0.470 -27.445 1.998 -0.085 -6.910 C4B LMT 4
LMT C5B C5* C 0 1 N N R N N N 5.523 0.530 -27.269 1.762 0.675 -5.604 C5B LMT 5
LMT C6B C6* C 0 1 N N N N N N 5.329 1.781 -28.151 2.867 1.717 -5.416 C6B LMT 6
LMT O1B O1* O 0 1 N N N N N N 6.984 -0.648 -25.072 -0.291 -0.565 -4.545 O1B LMT 7
LMT O2B O2* O 0 1 N N N N N N 4.709 -2.135 -24.109 -1.489 -1.459 -6.955 O2B LMT 8
LMT O3B O3* O 0 1 N N N N N N 3.477 -2.574 -26.513 1.026 -1.766 -8.357 O3B LMT 9
LMT "O4'" O4* O 0 1 N N N N N N 4.287 -1.032 -28.799 3.280 -0.716 -6.871 "O4'" LMT 10
LMT O5B O5* O 0 1 N N N N N N 5.554 1.041 -25.926 0.495 1.330 -5.648 O5B LMT 11
LMT O6B O6* O 0 1 N N N N N N 4.176 2.593 -27.888 2.652 2.424 -4.193 O6B LMT 12
LMT "C1'" "C1'" C 0 1 N N R N N N 10.945 0.772 -24.121 -1.705 -0.039 -0.712 "C1'" LMT 13
LMT "C2'" "C2'" C 0 1 N N R N N N 9.834 1.278 -23.300 -2.591 0.562 -1.805 "C2'" LMT 14
LMT "C3'" "C3'" C 0 1 N N R N N N 8.653 0.326 -23.399 -2.206 -0.054 -3.155 "C3'" LMT 15
LMT "C4'" "C4'" C 0 1 N N S N N N 8.149 0.244 -24.912 -0.699 0.128 -3.364 "C4'" LMT 16
LMT "C5'" "C5'" C 0 1 N N R N N N 9.380 -0.355 -25.667 0.044 -0.438 -2.153 "C5'" LMT 17
LMT "C6'" "C6'" C 0 1 N N N N N N 9.055 -0.423 -27.146 1.551 -0.289 -2.369 "C6'" LMT 18
LMT "O1'" "O1'" O 0 1 N N N N N N 11.923 1.800 -24.078 -2.079 0.505 0.554 "O1'" LMT 19
LMT "O2'" "O2'" O 0 1 N N N N N N 10.194 1.458 -21.946 -3.962 0.274 -1.522 "O2'" LMT 20
LMT "O3'" "O3'" O 0 1 N N N N N N 7.669 0.801 -22.481 -2.919 0.601 -4.206 "O3'" LMT 21
LMT "O5'" "O5'" O 0 1 N N N N N N 10.513 0.552 -25.475 -0.338 0.269 -0.976 "O5'" LMT 22
LMT "O6'" "O6'" O 0 1 N N N N N N 9.639 -1.580 -27.720 2.250 -0.896 -1.280 "O6'" LMT 23
LMT C1 C1 C 0 1 N N N N N N 13.304 1.527 -24.145 -1.223 -0.093 1.530 C1 LMT 24
LMT C2 C2 C 0 1 N N N N N N 14.078 2.751 -23.644 -1.573 0.449 2.917 C2 LMT 25
LMT C3 C3 C 0 1 N N N N N N 15.074 3.289 -24.675 -0.656 -0.191 3.961 C3 LMT 26
LMT C4 C4 C 0 1 N N N N N N 14.412 3.538 -26.018 -1.006 0.351 5.348 C4 LMT 27
LMT C5 C5 C 0 1 N N N N N N 13.547 4.797 -26.007 -0.090 -0.289 6.392 C5 LMT 28
LMT C6 C6 C 0 1 N N N N N N 14.349 6.047 -25.699 -0.439 0.253 7.779 C6 LMT 29
LMT C7 C7 C 0 1 N N N N N N 15.443 6.295 -26.738 0.476 -0.387 8.824 C7 LMT 30
LMT C8 C8 C 0 1 N N N N N N 14.871 6.484 -28.137 0.126 0.154 10.211 C8 LMT 31
LMT C9 C9 C 0 1 N N N N N N 13.920 7.675 -28.202 1.043 -0.486 11.255 C9 LMT 32
LMT C10 C10 C 0 1 N N N N N N 12.502 7.243 -28.529 0.693 0.056 12.642 C10 LMT 33
LMT C11 C11 C 0 1 N N N N N N 11.923 8.090 -29.655 1.609 -0.584 13.687 C11 LMT 34
LMT C12 C12 C 0 1 N N N N N N 10.442 8.228 -29.388 1.260 -0.041 15.074 C12 LMT 35
LMT H1B H1* H 0 1 N N N N N N 5.648 0.426 -23.857 -1.491 0.788 -5.540 H1B LMT 36
LMT H2B H2* H 0 1 N N N N N N 3.599 -0.554 -24.821 -0.605 0.210 -7.794 H2B LMT 37
LMT H3B H3* H 0 1 N N N N N N 5.483 -2.133 -26.698 1.010 -1.902 -6.294 H3B LMT 38
LMT H4B H4* H 0 1 N N N N N N 3.377 0.079 -27.267 1.959 0.609 -7.749 H4B LMT 39
LMT H5B H5* H 0 1 N N N N N N 6.447 -0.033 -27.536 1.778 -0.024 -4.769 H5B LMT 40
LMT "H6'2" 2H6* H 0 0 N N N N N N 6.246 2.413 -28.106 3.835 1.217 -5.382 "H6'2" LMT 41
LMT "H6'1" 1H6* H 0 0 N N N N N N 5.335 1.482 -29.225 2.849 2.419 -6.250 "H6'1" LMT 42
LMT H2O1 1H2O H 0 0 N N N N N N 4.014 -2.776 -24.202 -2.331 -0.989 -6.877 H2O1 LMT 43
LMT H3O1 1H3O H 0 0 N N N N N N 3.453 -2.920 -27.397 0.322 -2.426 -8.416 H3O1 LMT 44
LMT H4O1 1H4O H 0 0 N N N N N N 4.168 -0.320 -29.417 3.387 -1.182 -7.711 H4O1 LMT 45
LMT H6B H6* H 0 1 N N N N N N 4.056 3.363 -28.431 3.368 3.069 -4.114 H6B LMT 46
LMT "H1'" "H1'" H 0 1 N N N N N N 11.335 -0.202 -23.745 -1.835 -1.121 -0.694 "H1'" LMT 47
LMT "H2'" "H2'" H 0 1 N N N N N N 9.556 2.281 -23.699 -2.445 1.641 -1.843 "H2'" LMT 48
LMT "H3'" "H3'" H 0 1 N N N N N N 8.916 -0.721 -23.123 -2.450 -1.116 -3.156 "H3'" LMT 49
LMT "H4'" "H4'" H 0 1 N N N N N N 7.815 1.238 -25.290 -0.471 1.189 -3.468 "H4'" LMT 50
LMT "H5'" "H5'" H 0 1 N N N N N N 9.622 -1.373 -25.282 -0.202 -1.493 -2.038 "H5'" LMT 51
LMT H6D "2H6'" H 0 1 N N N N N N 7.957 -0.372 -27.334 1.835 -0.778 -3.301 H6D LMT 52
LMT H6E "1H6'" H 0 1 N N N N N N 9.356 0.506 -27.682 1.809 0.768 -2.421 H6E LMT 53
LMT H2O2 2H2O H 0 0 N N N N N N 9.476 1.784 -21.415 -4.161 0.679 -0.667 H2O2 LMT 54
LMT H3O2 2H3O H 0 0 N N N N N N 6.930 0.206 -22.542 -3.861 0.461 -4.035 H3O2 LMT 55
LMT "H6'" "H6'" H 0 1 N N N N N N 9.435 -1.622 -28.646 3.194 -0.781 -1.455 "H6'" LMT 56
LMT H12 2H1 H 0 1 N N N N N N 13.580 0.596 -23.597 -0.185 0.144 1.297 H12 LMT 57
LMT H11 1H1 H 0 1 N N N N N N 13.625 1.209 -25.164 -1.359 -1.174 1.518 H11 LMT 58
LMT H22 2H2 H 0 1 N N N N N N 13.380 3.553 -23.306 -2.611 0.211 3.149 H22 LMT 59
LMT H21 1H2 H 0 1 N N N N N N 14.585 2.532 -22.675 -1.437 1.530 2.929 H21 LMT 60
LMT H32 2H3 H 0 1 N N N N N N 15.592 4.202 -24.301 0.381 0.046 3.729 H32 LMT 61
LMT H31 1H3 H 0 1 N N N N N N 15.957 2.616 -24.775 -0.793 -1.272 3.949 H31 LMT 62
LMT H42 2H4 H 0 1 N N N N N N 15.165 3.572 -26.839 -2.044 0.113 5.580 H42 LMT 63
LMT H41 1H4 H 0 1 N N N N N N 13.827 2.649 -26.351 -0.870 1.432 5.360 H41 LMT 64
LMT H52 2H5 H 0 1 N N N N N N 12.984 4.906 -26.963 0.947 -0.051 6.160 H52 LMT 65
LMT H51 1H5 H 0 1 N N N N N N 12.687 4.687 -25.305 -0.226 -1.371 6.380 H51 LMT 66
LMT H62 2H6 H 0 1 N N N N N N 13.685 6.936 -25.589 -1.477 0.014 8.012 H62 LMT 67
LMT H61 1H6 H 0 1 N N N N N N 14.770 6.013 -24.667 -0.303 1.334 7.791 H61 LMT 68
LMT H72 2H7 H 0 1 N N N N N N 16.090 7.154 -26.446 1.514 -0.149 8.591 H72 LMT 69
LMT H71 1H7 H 0 1 N N N N N N 16.208 5.484 -26.720 0.340 -1.469 8.812 H71 LMT 70
LMT H82 2H8 H 0 1 N N N N N N 15.680 6.568 -28.899 -0.911 -0.083 10.443 H82 LMT 71
LMT H81 1H8 H 0 1 N N N N N N 14.381 5.552 -28.505 0.263 1.236 10.223 H81 LMT 72
LMT H92 2H9 H 0 1 N N N N N N 13.955 8.275 -27.263 2.081 -0.248 11.023 H92 LMT 73
LMT H91 1H9 H 0 1 N N N N N N 14.284 8.448 -28.917 0.907 -1.567 11.243 H91 LMT 74
LMT H102 2H10 H 0 0 N N N N N N 12.446 6.154 -28.761 -0.344 -0.181 12.875 H102 LMT 75
LMT H101 1H10 H 0 0 N N N N N N 11.848 7.255 -27.625 0.829 1.138 12.654 H101 LMT 76
LMT H112 2H11 H 0 0 N N N N N N 12.439 9.070 -29.775 2.647 -0.346 13.454 H112 LMT 77
LMT H111 1H11 H 0 0 N N N N N N 12.149 7.684 -30.668 1.473 -1.665 13.675 H111 LMT 78
LMT H123 3H12 H 0 0 N N N N N N 10.018 8.848 -30.212 1.913 -0.498 15.818 H123 LMT 79
LMT H122 2H12 H 0 0 N N N N N N 9.925 7.247 -29.267 1.396 1.039 15.086 H122 LMT 80
LMT H121 1H12 H 0 0 N N N N N N 10.215 8.633 -28.374 0.222 -0.279 15.306 H121 LMT 81
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LMT C1B C2B SING N N 1
LMT C1B O1B SING N N 2
LMT C1B O5B SING N N 3
LMT C1B H1B SING N N 4
LMT C2B C3B SING N N 5
LMT C2B O2B SING N N 6
LMT C2B H2B SING N N 7
LMT C3B C4B SING N N 8
LMT C3B O3B SING N N 9
LMT C3B H3B SING N N 10
LMT C4B C5B SING N N 11
LMT C4B "O4'" SING N N 12
LMT C4B H4B SING N N 13
LMT C5B C6B SING N N 14
LMT C5B O5B SING N N 15
LMT C5B H5B SING N N 16
LMT C6B O6B SING N N 17
LMT C6B "H6'2" SING N N 18
LMT C6B "H6'1" SING N N 19
LMT O1B "C4'" SING N N 20
LMT O2B H2O1 SING N N 21
LMT O3B H3O1 SING N N 22
LMT "O4'" H4O1 SING N N 23
LMT O6B H6B SING N N 24
LMT "C1'" "C2'" SING N N 25
LMT "C1'" "O1'" SING N N 26
LMT "C1'" "O5'" SING N N 27
LMT "C1'" "H1'" SING N N 28
LMT "C2'" "C3'" SING N N 29
LMT "C2'" "O2'" SING N N 30
LMT "C2'" "H2'" SING N N 31
LMT "C3'" "C4'" SING N N 32
LMT "C3'" "O3'" SING N N 33
LMT "C3'" "H3'" SING N N 34
LMT "C4'" "C5'" SING N N 35
LMT "C4'" "H4'" SING N N 36
LMT "C5'" "C6'" SING N N 37
LMT "C5'" "O5'" SING N N 38
LMT "C5'" "H5'" SING N N 39
LMT "C6'" "O6'" SING N N 40
LMT "C6'" H6D SING N N 41
LMT "C6'" H6E SING N N 42
LMT "O1'" C1 SING N N 43
LMT "O2'" H2O2 SING N N 44
LMT "O3'" H3O2 SING N N 45
LMT "O6'" "H6'" SING N N 46
LMT C1 C2 SING N N 47
LMT C1 H12 SING N N 48
LMT C1 H11 SING N N 49
LMT C2 C3 SING N N 50
LMT C2 H22 SING N N 51
LMT C2 H21 SING N N 52
LMT C3 C4 SING N N 53
LMT C3 H32 SING N N 54
LMT C3 H31 SING N N 55
LMT C4 C5 SING N N 56
LMT C4 H42 SING N N 57
LMT C4 H41 SING N N 58
LMT C5 C6 SING N N 59
LMT C5 H52 SING N N 60
LMT C5 H51 SING N N 61
LMT C6 C7 SING N N 62
LMT C6 H62 SING N N 63
LMT C6 H61 SING N N 64
LMT C7 C8 SING N N 65
LMT C7 H72 SING N N 66
LMT C7 H71 SING N N 67
LMT C8 C9 SING N N 68
LMT C8 H82 SING N N 69
LMT C8 H81 SING N N 70
LMT C9 C10 SING N N 71
LMT C9 H92 SING N N 72
LMT C9 H91 SING N N 73
LMT C10 C11 SING N N 74
LMT C10 H102 SING N N 75
LMT C10 H101 SING N N 76
LMT C11 C12 SING N N 77
LMT C11 H112 SING N N 78
LMT C11 H111 SING N N 79
LMT C12 H123 SING N N 80
LMT C12 H122 SING N N 81
LMT C12 H121 SING N N 82
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LMT SMILES ACDLabs 10.04 O(CCCCCCCCCCCC)C2OC(C(OC1OC(CO)C(O)C(O)C1O)C(O)C2O)CO
LMT SMILES_CANONICAL CACTVS 3.341 CCCCCCCCCCCCO[C@@H]1O[C@H](CO)[C@@H](O[C@H]2O[C@H](CO)[C@@H](O)[C@H](O)[C@H]2O)[C@H](O)[C@H]1O
LMT SMILES CACTVS 3.341 CCCCCCCCCCCCO[CH]1O[CH](CO)[CH](O[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O)[CH](O)[CH]1O
LMT SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CCCCCCCCCCCCO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@@H]2[C@@H]([C@H]([C@@H]([C@H](O2)CO)O)O)O)O)O
LMT SMILES "OpenEye OEToolkits" 1.5.0 CCCCCCCCCCCCOC1C(C(C(C(O1)CO)OC2C(C(C(C(O2)CO)O)O)O)O)O
LMT InChI InChI 1.03 InChI=1S/C24H46O11/c1-2-3-4-5-6-7-8-9-10-11-12-32-23-21(31)19(29)22(16(14-26)34-23)35-24-20(30)18(28)17(27)15(13-25)33-24/h15-31H,2-14H2,1H3/t15-,16-,17-,18+,19-,20-,21-,22-,23-,24-/m1/s1
LMT InChIKey InChI 1.03 NLEBIOOXCVAHBD-QKMCSOCLSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LMT "SYSTEMATIC NAME" ACDLabs 10.04 "dodecyl 4-O-alpha-D-glucopyranosyl-beta-D-glucopyranoside"
LMT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 (2R,3R,4S,5S,6R)-2-[(2R,3S,4R,5R,6R)-6-dodecoxy-4,5-dihydroxy-2-(hydroxymethyl)oxan-3-yl]oxy-6-(hydroxymethyl)oxane-3,4,5-triol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LMT 'Create component' 1999-08-25 EBI
LMT 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
LMT C1B C 9.495 -8.018 1
LMT C2B C 9.495 -9.518 2
LMT C3B C 8.196 -10.268 3
LMT C4B C 6.897 -9.518 4
LMT C5B C 6.897 -8.018 5
LMT C6B C 5.598 -7.268 6
LMT O1B O 10.794 -7.268 7
LMT O2B O 10.794 -10.268 8
LMT O3B O 8.196 -11.768 9
LMT "O4'" O 5.598 -10.268 10
LMT O5B O 8.196 -7.268 11
LMT O6B O 4.299 -8.018 12
LMT "C1'" C 10.794 -2.768 13
LMT "C2'" C 12.093 -3.518 14
LMT "C3'" C 12.093 -5.018 15
LMT "C4'" C 10.794 -5.768 16
LMT "C5'" C 9.495 -5.018 17
LMT "C6'" C 8.196 -5.768 18
LMT "O1'" O 10.794 -1.268 19
LMT "O2'" O 13.392 -2.768 20
LMT "O3'" O 13.392 -5.768 21
LMT "O5'" O 9.495 -3.518 22
LMT "O6'" O 6.897 -5.018 23
LMT C1 C 9.495 -0.517 24
LMT C2 C 9.495 0.983 25
LMT C3 C 8.196 1.732 26
LMT C4 C 8.196 3.232 27
LMT C5 C 6.897 3.982 28
LMT C6 C 6.897 5.482 29
LMT C7 C 5.598 6.232 30
LMT C8 C 5.598 7.732 31
LMT C9 C 4.299 8.482 32
LMT C10 C 4.299 9.982 33
LMT C11 C 3.000 10.732 34
LMT C12 C 3.000 12.232 35
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
LMT C1B C2B SINGLE NONE 1
LMT C1B O1B SINGLE BEGINDASH 2
LMT C1B O5B SINGLE NONE 3
LMT C2B C3B SINGLE NONE 4
LMT C2B O2B SINGLE BEGINDASH 5
LMT C3B C4B SINGLE NONE 6
LMT C3B O3B SINGLE BEGINWEDGE 7
LMT C4B C5B SINGLE NONE 8
LMT C4B "O4'" SINGLE BEGINDASH 9
LMT C5B C6B SINGLE BEGINWEDGE 10
LMT C5B O5B SINGLE NONE 11
LMT C6B O6B SINGLE NONE 12
LMT "C4'" O1B SINGLE BEGINDASH 13
LMT "C1'" "C2'" SINGLE NONE 14
LMT "C1'" "O1'" SINGLE BEGINWEDGE 15
LMT "C1'" "O5'" SINGLE NONE 16
LMT "C2'" "C3'" SINGLE NONE 17
LMT "C2'" "O2'" SINGLE BEGINDASH 18
LMT "C3'" "C4'" SINGLE NONE 19
LMT "C3'" "O3'" SINGLE BEGINWEDGE 20
LMT "C4'" "C5'" SINGLE NONE 21
LMT "C5'" "C6'" SINGLE BEGINWEDGE 22
LMT "C5'" "O5'" SINGLE NONE 23
LMT "C6'" "O6'" SINGLE NONE 24
LMT "O1'" C1 SINGLE NONE 25
LMT C1 C2 SINGLE NONE 26
LMT C2 C3 SINGLE NONE 27
LMT C3 C4 SINGLE NONE 28
LMT C4 C5 SINGLE NONE 29
LMT C5 C6 SINGLE NONE 30
LMT C6 C7 SINGLE NONE 31
LMT C7 C8 SINGLE NONE 32
LMT C8 C9 SINGLE NONE 33
LMT C9 C10 SINGLE NONE 34
LMT C10 C11 SINGLE NONE 35
LMT C11 C12 SINGLE NONE 36
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
LMT MurckoScaffold S1 scaffold 'C1CC[C@@H](O[C@H]2CCCOC2)OC1' InChI=1S/C10H18O3/c1-2-7-12-10(5-1)13-9-4-3-6-11-8-9/h9-10H,1-8H2/t9-,10+/m0/s1 LIWARGQXGIOGLQ-VHSXEESVSA-N
LMT pyranose F1 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
LMT C1B S1 1
LMT C2B S1 1
LMT C3B S1 1
LMT C4B S1 1
LMT C5B S1 1
LMT O1B S1 1
LMT O5B S1 1
LMT "C1'" S1 1
LMT "C2'" S1 1
LMT "C3'" S1 1
LMT "C4'" S1 1
LMT "C5'" S1 1
LMT "O5'" S1 1
LMT C4B F1 1
LMT C5B F1 1
LMT O5B F1 1
LMT C1B F1 1
LMT C2B F1 1
LMT C3B F1 1
LMT O1B F1 1
LMT "C4'" F1 2
LMT "C5'" F1 2
LMT "O5'" F1 2
LMT "C1'" F1 2
LMT "C2'" F1 2
LMT "C3'" F1 2
LMT "O1'" F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id LMT
_pdbe_chem_comp_rdkit_properties.exactmw 510.304
_pdbe_chem_comp_rdkit_properties.amw 510.621
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 24
_pdbe_chem_comp_rdkit_properties.NumHBD 7
_pdbe_chem_comp_rdkit_properties.NumHBA 11
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 35
_pdbe_chem_comp_rdkit_properties.NumAtoms 81
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 10
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 272.370
_pdbe_chem_comp_rdkit_properties.tpsa 178.530
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.452
_pdbe_chem_comp_rdkit_properties.CrippenMR 124.197
_pdbe_chem_comp_rdkit_properties.chi0v 16.491
_pdbe_chem_comp_rdkit_properties.chi1v 8.312
_pdbe_chem_comp_rdkit_properties.chi2v 3.135
_pdbe_chem_comp_rdkit_properties.chi3v 3.135
_pdbe_chem_comp_rdkit_properties.chi4v 1.770
_pdbe_chem_comp_rdkit_properties.chi0n 62.491
_pdbe_chem_comp_rdkit_properties.chi1n 30.670
_pdbe_chem_comp_rdkit_properties.chi2n 3.135
_pdbe_chem_comp_rdkit_properties.chi3n 3.135
_pdbe_chem_comp_rdkit_properties.chi4n 1.770
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.440
_pdbe_chem_comp_rdkit_properties.kappa1 5.851
_pdbe_chem_comp_rdkit_properties.kappa2 16.412
_pdbe_chem_comp_rdkit_properties.kappa3 9.114
_pdbe_chem_comp_rdkit_properties.Phi 2.744
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
LMT UniChem ChEMBL CHEMBL1234047
LMT UniChem PDBe LMT
LMT UniChem ChEBI 43769
LMT UniChem ZINC ZINC000016051829
LMT UniChem eMolecules 508238
LMT UniChem fdasrs DI107E57B4
LMT UniChem 'PubChem TPHARMA' 15010936
LMT UniChem BRENDA 11264
LMT UniChem BRENDA 15747
LMT UniChem BRENDA 172286
LMT UniChem BRENDA 174802
LMT UniChem BRENDA 220855
LMT UniChem BRENDA 32926
LMT UniChem BRENDA 42201
LMT UniChem BRENDA 51760
LMT UniChem BRENDA 6517
LMT UniChem BRENDA 93299
LMT UniChem ChemicalBook CB8191322
LMT UniChem rxnorm 'N-DODECYL .BETA.-D-MALTOSIDE'
LMT UniChem MedChemExpress HY-128974
LMT UniChem 'Probes And Drugs' PD018367
LMT UniChem Nikkaji J477.836G
LMT UniChem SureChEMBL SCHEMBL411624
LMT UniChem PubChem 114880
LMT UniChem ACTor 69227-93-6
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
LMT C1B -5.648 0.881 0.860 ETKDGv3 1
LMT C2B -7.080 1.113 1.424 ETKDGv3 2
LMT C3B -8.089 1.316 0.278 ETKDGv3 3
LMT C4B -8.028 0.149 -0.744 ETKDGv3 4
LMT C5B -6.657 -0.575 -0.701 ETKDGv3 5
LMT C6B -6.398 -1.292 -2.035 ETKDGv3 6
LMT O1B -4.911 0.049 1.744 ETKDGv3 7
LMT O2B -7.473 0.016 2.211 ETKDGv3 8
LMT O3B -7.882 2.560 -0.350 ETKDGv3 9
LMT "O4'" -9.040 -0.786 -0.469 ETKDGv3 10
LMT O5B -5.613 0.351 -0.464 ETKDGv3 11
LMT O6B -5.207 -2.026 -1.980 ETKDGv3 12
LMT "C1'" -0.789 0.238 1.987 ETKDGv3 13
LMT "C2'" -1.516 1.397 2.729 ETKDGv3 14
LMT "C3'" -3.045 1.185 2.794 ETKDGv3 15
LMT "C4'" -3.511 0.273 1.649 ETKDGv3 16
LMT "C5'" -2.778 -1.087 1.808 ETKDGv3 17
LMT "C6'" -2.911 -1.983 0.569 ETKDGv3 18
LMT "O1'" -0.723 0.481 0.589 ETKDGv3 19
LMT "O2'" -1.018 1.513 4.038 ETKDGv3 20
LMT "O3'" -3.704 2.423 2.730 ETKDGv3 21
LMT "O5'" -1.415 -1.011 2.227 ETKDGv3 22
LMT "O6'" -2.341 -1.376 -0.557 ETKDGv3 23
LMT C1 0.340 1.354 0.242 ETKDGv3 24
LMT C2 1.311 0.644 -0.703 ETKDGv3 25
LMT C3 2.043 -0.512 -0.003 ETKDGv3 26
LMT C4 2.927 -1.332 -0.960 ETKDGv3 27
LMT C5 4.058 -0.545 -1.647 ETKDGv3 28
LMT C6 5.079 0.032 -0.652 ETKDGv3 29
LMT C7 6.228 0.787 -1.344 ETKDGv3 30
LMT C8 7.133 -0.076 -2.246 ETKDGv3 31
LMT C9 7.764 -1.304 -1.561 ETKDGv3 32
LMT C10 8.598 -0.989 -0.306 ETKDGv3 33
LMT C11 9.818 -0.106 -0.608 ETKDGv3 34
LMT C12 10.701 0.051 0.627 ETKDGv3 35
LMT H1B -5.194 1.897 0.800 ETKDGv3 36
LMT H2B -7.063 2.028 2.062 ETKDGv3 37
LMT H3B -9.108 1.355 0.722 ETKDGv3 38
LMT H4B -8.188 0.570 -1.766 ETKDGv3 39
LMT H5B -6.664 -1.353 0.099 ETKDGv3 40
LMT "H6'2" -7.252 -1.963 -2.285 ETKDGv3 41
LMT "H6'1" -6.310 -0.541 -2.850 ETKDGv3 42
LMT H2O1 -8.232 0.321 2.775 ETKDGv3 43
LMT H3O1 -7.023 2.519 -0.844 ETKDGv3 44
LMT H4O1 -9.891 -0.397 -0.804 ETKDGv3 45
LMT H6B -5.419 -2.878 -1.516 ETKDGv3 46
LMT "H1'" 0.239 0.135 2.408 ETKDGv3 47
LMT "H2'" -1.320 2.349 2.181 ETKDGv3 48
LMT "H3'" -3.311 0.679 3.754 ETKDGv3 49
LMT "H4'" -3.219 0.731 0.673 ETKDGv3 50
LMT "H5'" -3.306 -1.630 2.624 ETKDGv3 51
LMT H6D -2.405 -2.954 0.768 ETKDGv3 52
LMT H6E -3.988 -2.186 0.382 ETKDGv3 53
LMT H2O2 -0.137 1.966 3.973 ETKDGv3 54
LMT H3O2 -3.570 2.864 3.609 ETKDGv3 55
LMT "H6'" -2.432 -2.028 -1.298 ETKDGv3 56
LMT H12 -0.096 2.219 -0.300 ETKDGv3 57
LMT H11 0.902 1.780 1.107 ETKDGv3 58
LMT H22 2.050 1.393 -1.058 ETKDGv3 59
LMT H21 0.750 0.259 -1.582 ETKDGv3 60
LMT H32 1.290 -1.209 0.426 ETKDGv3 61
LMT H31 2.644 -0.126 0.847 ETKDGv3 62
LMT H42 2.281 -1.779 -1.747 ETKDGv3 63
LMT H41 3.374 -2.177 -0.391 ETKDGv3 64
LMT H52 3.638 0.266 -2.279 ETKDGv3 65
LMT H51 4.574 -1.253 -2.328 ETKDGv3 66
LMT H62 4.567 0.762 0.009 ETKDGv3 67
LMT H61 5.479 -0.774 -0.002 ETKDGv3 68
LMT H72 6.851 1.280 -0.567 ETKDGv3 69
LMT H71 5.797 1.606 -1.961 ETKDGv3 70
LMT H82 6.553 -0.422 -3.127 ETKDGv3 71
LMT H81 7.940 0.568 -2.656 ETKDGv3 72
LMT H92 8.414 -1.822 -2.300 ETKDGv3 73
LMT H91 6.965 -2.027 -1.290 ETKDGv3 74
LMT H102 8.951 -1.956 0.115 ETKDGv3 75
LMT H101 7.964 -0.509 0.469 ETKDGv3 76
LMT H112 9.486 0.903 -0.930 ETKDGv3 77
LMT H111 10.419 -0.561 -1.425 ETKDGv3 78
LMT H123 11.083 -0.938 0.958 ETKDGv3 79
LMT H122 10.126 0.519 1.455 ETKDGv3 80
LMT H121 11.567 0.703 0.383 ETKDGv3 81
#