data_LMY
#
_chem_comp.id LMY
_chem_comp.name
~{N}-[3-[[2-cyano-4-methyl-5-[[4-[[2-(methylamino)-6-[2,2,2-tris(fluoranyl)ethyl]thieno[2,3-d]pyrimidin-4-yl]amino]piperidin-1-yl]methyl]indol-1-yl]methyl]-1-bicyclo[1.1.1]pentanyl]methanamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C32 H35 F3 N8 O S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-03-04
_chem_comp.pdbx_modified_date 2020-01-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 636.734
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code LMY
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6O5I
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LMY C10 C1 C 0 1 N N N N N N 7.264 8.039 -13.414 -6.498 3.653 0.053 C10 LMY 1
LMY C20 C2 C 0 1 N N N N N N 13.403 14.681 -12.020 -0.798 -3.433 -0.686 C20 LMY 2
LMY C22 C3 C 0 1 N N N N N N 13.172 14.041 -9.731 0.400 -2.128 0.967 C22 LMY 3
LMY C24 C4 C 0 1 N N N N N N 14.028 16.132 -10.237 1.584 -3.746 -0.391 C24 LMY 4
LMY C26 C5 C 0 1 Y N N N N N 15.338 17.770 -11.743 3.285 -2.372 -1.570 C26 LMY 5
LMY C28 C6 C 0 1 Y N N N N N 14.177 19.762 -12.681 5.313 -1.638 -0.453 C28 LMY 6
LMY C01 C7 C 0 1 Y N N N N N 13.242 8.362 -11.727 -6.012 -2.469 1.173 C01 LMY 7
LMY C03 C8 C 0 1 Y N N N N N 11.699 10.124 -11.916 -4.370 -0.918 0.693 C03 LMY 8
LMY C04 C9 C 0 1 Y N N N N N 10.726 9.191 -12.325 -5.364 0.092 0.608 C04 LMY 9
LMY C05 C10 C 0 1 Y N N N N N 11.028 7.829 -12.462 -6.692 -0.286 0.815 C05 LMY 10
LMY C07 C11 C 0 1 Y N N N N N 9.263 9.423 -12.691 -5.241 1.510 0.321 C07 LMY 11
LMY C08 C12 C 0 1 Y N N N N N 8.726 8.143 -13.051 -6.379 2.175 0.319 C08 LMY 12
LMY C11 C13 C 0 1 N N N N N N 6.489 7.665 -12.141 -6.689 3.889 -1.447 C11 LMY 13
LMY C16 C14 C 0 1 N N N N N N 15.463 8.902 -10.760 -7.747 -4.148 1.687 C16 LMY 14
LMY C18 C15 C 0 1 N N N N N N 12.394 12.463 -11.513 -2.021 -1.660 0.577 C18 LMY 15
LMY C19 C16 C 0 1 N N N N N N 12.377 13.627 -12.427 -1.904 -2.378 -0.770 C19 LMY 16
LMY C23 C17 C 0 1 N N N N N N 12.148 12.939 -10.120 -0.669 -1.035 0.933 C23 LMY 17
LMY C25 C18 C 0 1 Y N N N N N 14.095 17.391 -11.106 2.893 -3.000 -0.423 C25 LMY 18
LMY C27 C19 C 0 1 Y N N N N N 15.345 19.042 -12.554 4.504 -1.683 -1.605 C27 LMY 19
LMY C29 C20 C 0 1 Y N N N N N 12.847 19.387 -12.043 4.890 -2.282 0.706 C29 LMY 20
LMY C30 C21 C 0 1 Y N N N N N 12.908 18.175 -11.226 3.690 -2.958 0.714 C30 LMY 21
LMY C31 C22 C 0 1 Y N N N N N 16.371 19.652 -13.219 5.180 -0.953 -2.613 C31 LMY 22
LMY C32 C23 C 0 1 Y N N N N N 15.767 20.781 -13.775 6.344 -0.494 -2.081 C32 LMY 23
LMY C34 C24 C 0 1 N N N N N N 13.483 21.860 -13.866 7.543 -0.610 0.145 C34 LMY 24
LMY C35 C25 C 0 1 N N N N N N 13.475 22.934 -12.830 7.259 0.698 0.886 C35 LMY 25
LMY C36 C26 C 0 1 N N N N N N 13.122 22.765 -11.346 6.077 1.054 1.821 C36 LMY 26
LMY C37 C27 C 0 1 N N N N N N 13.190 24.301 -11.714 6.882 2.377 1.829 C37 LMY 27
LMY C38 C28 C 0 1 N N N N N N 12.391 24.047 -12.982 7.037 2.119 0.309 C38 LMY 28
LMY C39 C29 C 0 1 N N N N N N 14.567 23.969 -12.458 8.120 1.424 1.943 C39 LMY 29
LMY C41 C30 C 0 1 N N N N N N 14.003 25.974 -9.985 7.428 4.681 2.405 C41 LMY 30
LMY C43 C31 C 0 1 N N N N N N 16.606 16.953 -11.613 2.412 -2.426 -2.797 C43 LMY 31
LMY C44 C32 C 0 1 N N N N N N 16.411 21.826 -14.609 7.320 0.292 -2.774 C44 LMY 32
LMY F12 F1 F 0 1 N N N N N N 6.596 8.525 -11.129 -5.588 3.377 -2.142 F12 LMY 33
LMY F13 F2 F 0 1 N N N N N N 6.842 6.463 -11.655 -7.853 3.242 -1.876 F13 LMY 34
LMY F14 F3 F 0 1 N N N N N N 5.170 7.574 -12.383 -6.800 5.261 -1.693 F14 LMY 35
LMY N02 N1 N 0 1 Y N N N N N 12.923 9.707 -11.573 -4.737 -2.159 0.973 N02 LMY 36
LMY N06 N2 N 0 1 Y N N N N N 12.357 7.420 -12.167 -6.971 -1.566 1.099 N06 LMY 37
LMY N15 N3 N 0 1 N N N N N N 14.525 7.959 -11.389 -6.346 -3.781 1.463 N15 LMY 38
LMY N17 N4 N 0 1 N N N N N N 11.382 11.465 -11.834 -3.038 -0.610 0.487 N17 LMY 39
LMY N21 N5 N 0 1 N N N N N N 13.135 15.177 -10.663 0.474 -2.785 -0.344 N21 LMY 40
LMY N33 N6 N 0 1 Y N N N N N 14.440 20.833 -13.477 6.435 -0.905 -0.766 N33 LMY 41
LMY N40 N7 N 0 1 N N N N N N 12.961 25.406 -10.784 6.592 3.632 2.528 N40 LMY 42
LMY N45 N8 N 0 1 N N N N N N 16.852 22.618 -15.245 8.094 0.916 -3.324 N45 LMY 43
LMY O42 O1 O 0 1 N N N N N N 15.103 25.554 -10.066 8.421 4.587 1.715 O42 LMY 44
LMY S09 S1 S 0 1 Y N N N N N 9.813 6.895 -12.981 -7.737 1.119 0.662 S09 LMY 45
LMY H1 H1 H 0 1 N N N N N N 6.905 9.004 -13.801 -7.356 4.051 0.595 H1 LMY 46
LMY H2 H2 H 0 1 N N N N N N 7.123 7.262 -14.180 -5.592 4.157 0.388 H2 LMY 47
LMY H3 H3 H 0 1 N N N N N N 14.408 14.235 -12.049 -1.051 -4.164 0.083 H3 LMY 48
LMY H4 H4 H 0 1 N N N N N N 13.355 15.522 -12.727 -0.703 -3.936 -1.648 H4 LMY 49
LMY H5 H5 H 0 1 N N N N N N 14.183 13.607 -9.740 1.367 -1.684 1.206 H5 LMY 50
LMY H6 H6 H 0 1 N N N N N N 12.937 14.403 -8.719 0.142 -2.865 1.728 H6 LMY 51
LMY H7 H7 H 0 1 N N N N N N 15.030 15.678 -10.217 1.494 -4.362 -1.285 H7 LMY 52
LMY H8 H8 H 0 1 N N N N N N 13.743 16.435 -9.219 1.551 -4.382 0.494 H8 LMY 53
LMY H9 H9 H 0 1 N N N N N N 8.736 10.366 -12.681 -4.290 1.984 0.126 H9 LMY 54
LMY H10 H10 H 0 1 N N N N N N 16.421 8.396 -10.571 -7.814 -5.215 1.901 H10 LMY 55
LMY H11 H11 H 0 1 N N N N N N 15.627 9.758 -11.431 -8.139 -3.583 2.533 H11 LMY 56
LMY H12 H12 H 0 1 N N N N N N 15.042 9.257 -9.808 -8.330 -3.918 0.795 H12 LMY 57
LMY H13 H13 H 0 1 N N N N N N 13.388 11.994 -11.554 -2.305 -2.376 1.349 H13 LMY 58
LMY H14 H14 H 0 1 N N N N N N 11.375 14.080 -12.409 -1.658 -1.655 -1.548 H14 LMY 59
LMY H15 H15 H 0 1 N N N N N N 12.605 13.283 -13.447 -2.851 -2.862 -1.008 H15 LMY 60
LMY H16 H16 H 0 1 N N N N N N 11.130 13.351 -10.053 -0.734 -0.558 1.911 H16 LMY 61
LMY H17 H17 H 0 1 N N N N N N 12.247 12.092 -9.425 -0.404 -0.290 0.182 H17 LMY 62
LMY H18 H18 H 0 1 N N N N N N 11.943 19.962 -12.181 5.502 -2.255 1.596 H18 LMY 63
LMY H19 H19 H 0 1 N N N N N N 12.022 17.862 -10.694 3.363 -3.456 1.615 H19 LMY 64
LMY H20 H20 H 0 1 N N N N N N 17.401 19.337 -13.296 4.834 -0.790 -3.622 H20 LMY 65
LMY H21 H21 H 0 1 N N N N N N 13.774 22.287 -14.837 8.467 -0.511 -0.425 H21 LMY 66
LMY H22 H22 H 0 1 N N N N N N 12.479 21.417 -13.946 7.646 -1.421 0.867 H22 LMY 67
LMY H23 H23 H 0 1 N N N N N N 12.143 22.334 -11.090 5.104 1.110 1.333 H23 LMY 68
LMY H24 H24 H 0 1 N N N N N N 13.890 22.357 -10.672 6.063 0.517 2.770 H24 LMY 69
LMY H25 H25 H 0 1 N N N N N N 12.496 24.762 -13.812 7.916 2.572 -0.148 H25 LMY 70
LMY H26 H26 H 0 1 N N N N N N 11.335 23.758 -12.879 6.124 2.241 -0.273 H26 LMY 71
LMY H27 H27 H 0 1 N N N N N N 15.421 23.633 -11.852 8.207 0.906 2.898 H27 LMY 72
LMY H28 H28 H 0 1 N N N N N N 14.920 24.660 -13.238 9.063 1.824 1.571 H28 LMY 73
LMY H29 H29 H 0 1 N N N N N N 13.783 26.786 -9.308 7.214 5.606 2.920 H29 LMY 74
LMY H30 H30 H 0 1 N N N N N N 17.176 17.297 -10.737 1.659 -1.640 -2.741 H30 LMY 75
LMY H31 H31 H 0 1 N N N N N N 16.347 15.891 -11.488 3.025 -2.279 -3.686 H31 LMY 76
LMY H32 H32 H 0 1 N N N N N N 17.217 17.077 -12.519 1.920 -3.397 -2.851 H32 LMY 77
LMY H33 H33 H 0 1 N N N N N N 14.427 7.189 -10.758 -5.654 -4.458 1.517 H33 LMY 78
LMY H34 H34 H 0 1 N N N N N N 11.004 11.721 -12.723 -2.777 0.302 0.283 H34 LMY 79
LMY H36 H36 H 0 1 N N N N N N 12.037 25.780 -10.703 5.798 3.707 3.080 H36 LMY 80
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LMY N45 C44 TRIP N N 1
LMY C44 C32 SING N N 2
LMY C34 N33 SING N N 3
LMY C34 C35 SING N N 4
LMY C32 N33 SING Y N 5
LMY C32 C31 DOUB Y N 6
LMY N33 C28 SING Y N 7
LMY C10 C08 SING N N 8
LMY C10 C11 SING N N 9
LMY C31 C27 SING Y N 10
LMY C08 S09 SING Y N 11
LMY C08 C07 DOUB Y N 12
LMY C38 C35 SING N N 13
LMY C38 C37 SING N N 14
LMY S09 C05 SING Y N 15
LMY C35 C39 SING N N 16
LMY C35 C36 SING N N 17
LMY C07 C04 SING Y N 18
LMY C28 C27 DOUB Y N 19
LMY C28 C29 SING Y N 20
LMY C27 C26 SING Y N 21
LMY C05 C04 DOUB Y N 22
LMY C05 N06 SING Y N 23
LMY C39 C37 SING N N 24
LMY C19 C20 SING N N 25
LMY C19 C18 SING N N 26
LMY F14 C11 SING N N 27
LMY C04 C03 SING Y N 28
LMY N06 C01 DOUB Y N 29
LMY C11 F13 SING N N 30
LMY C11 F12 SING N N 31
LMY C29 C30 DOUB Y N 32
LMY C20 N21 SING N N 33
LMY C03 N17 SING N N 34
LMY C03 N02 DOUB Y N 35
LMY N17 C18 SING N N 36
LMY C26 C43 SING N N 37
LMY C26 C25 DOUB Y N 38
LMY C01 N02 SING Y N 39
LMY C01 N15 SING N N 40
LMY C37 C36 SING N N 41
LMY C37 N40 SING N N 42
LMY C18 C23 SING N N 43
LMY N15 C16 SING N N 44
LMY C30 C25 SING Y N 45
LMY C25 C24 SING N N 46
LMY N40 C41 SING N N 47
LMY N21 C24 SING N N 48
LMY N21 C22 SING N N 49
LMY C23 C22 SING N N 50
LMY O42 C41 DOUB N N 51
LMY C10 H1 SING N N 52
LMY C10 H2 SING N N 53
LMY C20 H3 SING N N 54
LMY C20 H4 SING N N 55
LMY C22 H5 SING N N 56
LMY C22 H6 SING N N 57
LMY C24 H7 SING N N 58
LMY C24 H8 SING N N 59
LMY C07 H9 SING N N 60
LMY C16 H10 SING N N 61
LMY C16 H11 SING N N 62
LMY C16 H12 SING N N 63
LMY C18 H13 SING N N 64
LMY C19 H14 SING N N 65
LMY C19 H15 SING N N 66
LMY C23 H16 SING N N 67
LMY C23 H17 SING N N 68
LMY C29 H18 SING N N 69
LMY C30 H19 SING N N 70
LMY C31 H20 SING N N 71
LMY C34 H21 SING N N 72
LMY C34 H22 SING N N 73
LMY C36 H23 SING N N 74
LMY C36 H24 SING N N 75
LMY C38 H25 SING N N 76
LMY C38 H26 SING N N 77
LMY C39 H27 SING N N 78
LMY C39 H28 SING N N 79
LMY C41 H29 SING N N 80
LMY C43 H30 SING N N 81
LMY C43 H31 SING N N 82
LMY C43 H32 SING N N 83
LMY N15 H33 SING N N 84
LMY N17 H34 SING N N 85
LMY N40 H36 SING N N 86
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LMY InChI InChI 1.03 InChI=1S/C32H35F3N8OS/c1-19-20(3-4-26-24(19)9-22(12-36)43(26)17-30-14-31(15-30,16-30)38-18-44)13-42-7-5-21(6-8-42)39-27-25-10-23(11-32(33,34)35)45-28(25)41-29(37-2)40-27/h3-4,9-10,18,21H,5-8,11,13-17H2,1-2H3,(H,38,44)(H2,37,39,40,41)/t30-,31+
LMY InChIKey InChI 1.03 MBFYNGBMAACLAT-QRRGNZNSSA-N
LMY SMILES_CANONICAL CACTVS 3.385 "CNc1nc(NC2CCN(CC2)Cc3ccc4n(CC56CC(C5)(C6)NC=O)c(cc4c3C)C#N)c7cc(CC(F)(F)F)sc7n1"
LMY SMILES CACTVS 3.385 "CNc1nc(NC2CCN(CC2)Cc3ccc4n(CC56CC(C5)(C6)NC=O)c(cc4c3C)C#N)c7cc(CC(F)(F)F)sc7n1"
LMY SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "Cc1c(ccc2c1cc(n2CC34CC(C3)(C4)NC=O)C#N)CN5CCC(CC5)Nc6c7cc(sc7nc(n6)NC)CC(F)(F)F"
LMY SMILES "OpenEye OEToolkits" 2.0.7 "Cc1c(ccc2c1cc(n2CC34CC(C3)(C4)NC=O)C#N)CN5CCC(CC5)Nc6c7cc(sc7nc(n6)NC)CC(F)(F)F"
#
_pdbx_chem_comp_identifier.comp_id LMY
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
~{N}-[3-[[2-cyano-4-methyl-5-[[4-[[2-(methylamino)-6-[2,2,2-tris(fluoranyl)ethyl]thieno[2,3-d]pyrimidin-4-yl]amino]piperidin-1-yl]methyl]indol-1-yl]methyl]-1-bicyclo[1.1.1]pentanyl]methanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LMY 'Create component' 2019-03-04 RCSB
LMY 'Initial release' 2020-01-08 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
LMY C10 C -1.836 -0.294 1
LMY C20 C 0.801 -3.221 2
LMY C22 C 2.096 -5.475 3
LMY C24 C 3.399 -3.228 4
LMY C26 C 2.104 -0.977 5
LMY C28 C 3.408 1.272 6
LMY C01 C -5.701 -5.461 7
LMY C03 C -3.102 -5.466 8
LMY C04 C -3.099 -3.964 9
LMY C05 C -4.397 -3.213 10
LMY C07 C -1.981 -2.964 11
LMY C08 C -2.590 -1.593 12
LMY C11 C -2.584 1.006 13
LMY C16 C -8.298 -5.455 14
LMY C18 C -0.503 -5.470 15
LMY C19 C -0.503 -3.971 16
LMY C23 C 0.792 -6.224 17
LMY C25 C 3.403 -1.727 18
LMY C27 C 2.108 0.526 19
LMY C29 C 4.703 0.521 20
LMY C30 C 4.704 -0.981 21
LMY C31 C 0.993 1.531 22
LMY C32 C 1.607 2.900 23
LMY C34 C 4.103 3.854 24
LMY C35 C 3.643 5.284 25
LMY C36 C 3.570 6.371 26
LMY C37 C 2.995 7.295 27
LMY C38 C 2.304 5.962 28
LMY C39 C 4.336 6.618 29
LMY C41 C 3.536 9.836 30
LMY C43 C 0.805 -1.724 31
LMY C44 C 0.858 4.201 32
LMY F12 F -1.832 2.304 33
LMY F13 F -3.882 1.759 34
LMY F14 F -3.885 0.259 35
LMY N02 N -4.403 -6.210 36
LMY N06 N -5.698 -3.959 37
LMY N15 N -7.001 -6.207 38
LMY N17 N -1.805 -6.218 39
LMY N21 N 2.096 -3.976 40
LMY N33 N 3.098 2.740 41
LMY N40 N 2.531 8.722 42
LMY N45 N 0.111 5.501 43
LMY O42 O 3.075 11.264 44
LMY S09 S -4.082 -1.745 45
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
LMY N45 C44 TRIPLE NONE 1
LMY C44 C32 SINGLE NONE 2
LMY C34 N33 SINGLE NONE 3
LMY C35 C34 SINGLE BEGINWEDGE 4
LMY C32 N33 SINGLE NONE 5
LMY C32 C31 DOUBLE NONE 6
LMY N33 C28 SINGLE NONE 7
LMY C10 C08 SINGLE NONE 8
LMY C10 C11 SINGLE NONE 9
LMY C31 C27 SINGLE NONE 10
LMY C08 S09 SINGLE NONE 11
LMY C08 C07 DOUBLE NONE 12
LMY C38 C35 SINGLE NONE 13
LMY C38 C37 SINGLE NONE 14
LMY S09 C05 SINGLE NONE 15
LMY C35 C39 SINGLE NONE 16
LMY C35 C36 SINGLE NONE 17
LMY C07 C04 SINGLE NONE 18
LMY C28 C27 DOUBLE NONE 19
LMY C28 C29 SINGLE NONE 20
LMY C27 C26 SINGLE NONE 21
LMY C05 C04 DOUBLE NONE 22
LMY C05 N06 SINGLE NONE 23
LMY C39 C37 SINGLE NONE 24
LMY C19 C20 SINGLE NONE 25
LMY C19 C18 SINGLE NONE 26
LMY F14 C11 SINGLE NONE 27
LMY C04 C03 SINGLE NONE 28
LMY N06 C01 DOUBLE NONE 29
LMY C11 F13 SINGLE NONE 30
LMY C11 F12 SINGLE NONE 31
LMY C29 C30 DOUBLE NONE 32
LMY C20 N21 SINGLE NONE 33
LMY C03 N17 SINGLE NONE 34
LMY C03 N02 DOUBLE NONE 35
LMY N17 C18 SINGLE NONE 36
LMY C26 C43 SINGLE NONE 37
LMY C26 C25 DOUBLE NONE 38
LMY C01 N02 SINGLE NONE 39
LMY C01 N15 SINGLE NONE 40
LMY C37 C36 SINGLE NONE 41
LMY C37 N40 SINGLE BEGINWEDGE 42
LMY C18 C23 SINGLE NONE 43
LMY N15 C16 SINGLE NONE 44
LMY C30 C25 SINGLE NONE 45
LMY C25 C24 SINGLE NONE 46
LMY N40 C41 SINGLE NONE 47
LMY N21 C24 SINGLE NONE 48
LMY N21 C22 SINGLE NONE 49
LMY C23 C22 SINGLE NONE 50
LMY O42 C41 DOUBLE NONE 51
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
LMY MurckoScaffold S1 scaffold c1nc(NC2CCN(Cc3ccc4c(ccn4CC45CC(C4)C5)c3)CC2)c2ccsc2n1 InChI=1S/C26H29N5S/c1-2-23-20(3-9-31(23)16-26-12-19(13-26)14-26)11-18(1)15-30-7-4-21(5-8-30)29-24-22-6-10-32-25(22)28-17-27-24/h1-3,6,9-11,17,19,21H,4-5,7-8,12-16H2,(H,27,28,29) XLAYEXZXYFLKJT-UHFFFAOYSA-N
LMY cyclobutane F1 fragment C1CCC1 InChI=1S/C4H8/c1-2-4-3-1/h1-4H2 PMPVIKIVABFJJI-UHFFFAOYSA-N
LMY indole F2 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
LMY phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
LMY pyrimidine F4 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
LMY pyrrole F5 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
LMY thiophen F6 fragment c1ccsc1 InChI=1S/C4H4S/c1-2-4-5-3-1/h1-4H YTPLMLYBLZKORZ-UHFFFAOYSA-N
LMY Z54628578 F7 fragment CNc1ncccn1 InChI=1S/C5H7N3/c1-6-5-7-3-2-4-8-5/h2-4H,1H3,(H,6,7,8) BQNXHDSGGRTFNX-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
LMY C20 S1 1
LMY C22 S1 1
LMY C24 S1 1
LMY C26 S1 1
LMY C28 S1 1
LMY C01 S1 1
LMY C03 S1 1
LMY C04 S1 1
LMY C05 S1 1
LMY C07 S1 1
LMY C08 S1 1
LMY C18 S1 1
LMY C19 S1 1
LMY C23 S1 1
LMY C25 S1 1
LMY C27 S1 1
LMY C29 S1 1
LMY C30 S1 1
LMY C31 S1 1
LMY C32 S1 1
LMY C34 S1 1
LMY C35 S1 1
LMY C36 S1 1
LMY C37 S1 1
LMY C38 S1 1
LMY C39 S1 1
LMY N02 S1 1
LMY N06 S1 1
LMY N17 S1 1
LMY N21 S1 1
LMY N33 S1 1
LMY S09 S1 1
LMY C35 F1 1
LMY C38 F1 1
LMY C37 F1 1
LMY C39 F1 1
LMY C35 F1 2
LMY C38 F1 2
LMY C37 F1 2
LMY C36 F1 2
LMY C35 F1 3
LMY C39 F1 3
LMY C37 F1 3
LMY C36 F1 3
LMY C28 F2 1
LMY C27 F2 1
LMY C31 F2 1
LMY C32 F2 1
LMY N33 F2 1
LMY C26 F2 1
LMY C25 F2 1
LMY C30 F2 1
LMY C29 F2 1
LMY C26 F3 1
LMY C27 F3 1
LMY C28 F3 1
LMY C29 F3 1
LMY C30 F3 1
LMY C25 F3 1
LMY C04 F4 1
LMY C05 F4 1
LMY N06 F4 1
LMY C01 F4 1
LMY N02 F4 1
LMY C03 F4 1
LMY C28 F5 1
LMY C27 F5 1
LMY C31 F5 1
LMY C32 F5 1
LMY N33 F5 1
LMY C05 F6 1
LMY C04 F6 1
LMY C07 F6 1
LMY C08 F6 1
LMY S09 F6 1
LMY C16 F7 1
LMY N15 F7 1
LMY C01 F7 1
LMY N06 F7 1
LMY C05 F7 1
LMY C04 F7 1
LMY C03 F7 1
LMY N02 F7 1
#
_pdbe_chem_comp_rdkit_properties.comp_id LMY
_pdbe_chem_comp_rdkit_properties.exactmw 636.261
_pdbe_chem_comp_rdkit_properties.amw 636.748
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 45
_pdbe_chem_comp_rdkit_properties.NumAtoms 80
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 13
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 8
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 4
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 2
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 311.710
_pdbe_chem_comp_rdkit_properties.tpsa 110.900
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.881
_pdbe_chem_comp_rdkit_properties.CrippenMR 161.123
_pdbe_chem_comp_rdkit_properties.chi0v 22.345
_pdbe_chem_comp_rdkit_properties.chi1v 12.797
_pdbe_chem_comp_rdkit_properties.chi2v 6.985
_pdbe_chem_comp_rdkit_properties.chi3v 6.985
_pdbe_chem_comp_rdkit_properties.chi4v 5.202
_pdbe_chem_comp_rdkit_properties.chi0n 56.528
_pdbe_chem_comp_rdkit_properties.chi1n 29.322
_pdbe_chem_comp_rdkit_properties.chi2n 6.088
_pdbe_chem_comp_rdkit_properties.chi3n 6.088
_pdbe_chem_comp_rdkit_properties.chi4n 4.317
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.890
_pdbe_chem_comp_rdkit_properties.kappa1 9.810
_pdbe_chem_comp_rdkit_properties.kappa2 10.875
_pdbe_chem_comp_rdkit_properties.kappa3 5.479
_pdbe_chem_comp_rdkit_properties.Phi 2.371
#
_pdbe_chem_comp_external_mappings.comp_id LMY
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id LMY
#