data_LOQ
#
_chem_comp.id LOQ
_chem_comp.name 1-(4-methylphenyl)pyrrolidine-2,5-dione
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H11 N O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-08-30
_chem_comp.pdbx_modified_date 2019-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 189.211
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code LOQ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6SOT
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LOQ C4 C1 C 0 1 Y N N N N N 23.026 114.695 12.344 0.298 0.004 0.003 C4 LOQ 1
LOQ C5 C2 C 0 1 Y N N N N N 22.859 113.593 11.492 0.994 0.674 -0.995 C5 LOQ 2
LOQ C6 C3 C 0 1 Y N N N N N 22.343 112.414 12.009 2.375 0.671 -0.994 C6 LOQ 3
LOQ C7 C4 C 0 1 N N N N N N 22.963 117.184 12.116 -1.825 -1.104 -0.225 C7 LOQ 4
LOQ C8 C5 C 0 1 N N N N N N 23.775 118.251 11.401 -3.297 -0.761 -0.153 C8 LOQ 5
LOQ C10 C6 C 0 1 N N N N N N 24.694 116.043 11.010 -1.831 1.103 0.222 C10 LOQ 6
LOQ N N1 N 0 1 N N N N N N 23.543 115.920 11.839 -1.104 0.001 0.001 N LOQ 7
LOQ C C7 C 0 1 N N N N N N 21.412 111.097 13.929 4.572 -0.001 -0.002 C LOQ 8
LOQ O O1 O 0 1 N N N N N N 21.980 117.350 12.827 -1.372 -2.206 -0.446 O LOQ 9
LOQ C1 C8 C 0 1 Y N N N N N 21.988 112.343 13.382 3.065 0.000 -0.001 C1 LOQ 10
LOQ C2 C9 C 0 1 Y N N N N N 22.159 113.449 14.211 2.375 -0.668 0.994 C2 LOQ 11
LOQ C3 C10 C 0 1 Y N N N N N 22.678 114.629 13.710 0.994 -0.668 0.998 C3 LOQ 12
LOQ C9 C11 C 0 1 N N N N N N 24.921 117.506 10.691 -3.301 0.752 0.150 C9 LOQ 13
LOQ O1 O2 O 0 1 N N N N N N 25.352 115.108 10.639 -1.383 2.206 0.446 O1 LOQ 14
LOQ H1 H1 H 0 1 N N N N N N 23.128 113.662 10.448 0.455 1.197 -1.771 H1 LOQ 15
LOQ H2 H2 H 0 1 N N N N N N 22.212 111.553 11.370 2.916 1.192 -1.769 H2 LOQ 16
LOQ H3 H3 H 0 1 N N N N N N 24.179 118.973 12.125 -3.785 -0.962 -1.107 H3 LOQ 17
LOQ H4 H4 H 0 1 N N N N N N 22.221 110.452 14.302 4.937 0.851 0.572 H4 LOQ 18
LOQ H5 H5 H 0 1 N N N N N N 20.727 111.341 14.754 4.935 -0.925 0.449 H5 LOQ 19
LOQ H6 H6 H 0 1 N N N N N N 20.859 110.570 13.137 4.935 0.070 -1.027 H6 LOQ 20
LOQ H7 H7 H 0 1 N N N N N N 21.884 113.385 15.253 2.917 -1.191 1.768 H7 LOQ 21
LOQ H8 H8 H 0 1 N N N N N N 22.815 115.486 14.353 0.456 -1.191 1.775 H8 LOQ 22
LOQ H9 H9 H 0 1 N N N N N N 25.896 117.839 11.076 -3.788 1.303 -0.654 H9 LOQ 23
LOQ H10 H10 H 0 1 N N N N N N 23.149 118.779 10.666 -3.782 -1.316 0.650 H10 LOQ 24
LOQ H11 H11 H 0 1 N N N N N N 24.878 117.676 9.605 -3.790 0.950 1.104 H11 LOQ 25
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LOQ O1 C10 DOUB N N 1
LOQ C9 C10 SING N N 2
LOQ C9 C8 SING N N 3
LOQ C10 N SING N N 4
LOQ C8 C7 SING N N 5
LOQ C5 C6 DOUB Y N 6
LOQ C5 C4 SING Y N 7
LOQ N C7 SING N N 8
LOQ N C4 SING N N 9
LOQ C6 C1 SING Y N 10
LOQ C7 O DOUB N N 11
LOQ C4 C3 DOUB Y N 12
LOQ C1 C SING N N 13
LOQ C1 C2 DOUB Y N 14
LOQ C3 C2 SING Y N 15
LOQ C5 H1 SING N N 16
LOQ C6 H2 SING N N 17
LOQ C8 H3 SING N N 18
LOQ C H4 SING N N 19
LOQ C H5 SING N N 20
LOQ C H6 SING N N 21
LOQ C2 H7 SING N N 22
LOQ C3 H8 SING N N 23
LOQ C9 H9 SING N N 24
LOQ C8 H10 SING N N 25
LOQ C9 H11 SING N N 26
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LOQ InChI InChI 1.03 InChI=1S/C11H11NO2/c1-8-2-4-9(5-3-8)12-10(13)6-7-11(12)14/h2-5H,6-7H2,1H3
LOQ InChIKey InChI 1.03 IDSFKFXFMNGXCK-UHFFFAOYSA-N
LOQ SMILES_CANONICAL CACTVS 3.385 Cc1ccc(cc1)N2C(=O)CCC2=O
LOQ SMILES CACTVS 3.385 Cc1ccc(cc1)N2C(=O)CCC2=O
LOQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 Cc1ccc(cc1)N2C(=O)CCC2=O
LOQ SMILES "OpenEye OEToolkits" 2.0.7 Cc1ccc(cc1)N2C(=O)CCC2=O
#
_pdbx_chem_comp_identifier.comp_id LOQ
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier 1-(4-methylphenyl)pyrrolidine-2,5-dione
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LOQ 'Create component' 2019-08-30 EBI
LOQ 'Initial release' 2019-10-02 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
LOQ C4 C 5.640 0.346 1
LOQ C5 C 4.341 -0.404 2
LOQ C6 C 4.341 -1.904 3
LOQ C7 C 4.427 2.728 4
LOQ C8 C 4.890 4.154 5
LOQ C10 C 6.854 2.728 6
LOQ N N 5.640 1.846 7
LOQ C C 5.640 -4.154 8
LOQ O O 3.000 2.264 9
LOQ C1 C 5.640 -2.654 10
LOQ C2 C 6.939 -1.904 11
LOQ C3 C 6.939 -0.404 12
LOQ C9 C 6.390 4.154 13
LOQ O1 O 8.280 2.264 14
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
LOQ O1 C10 DOUBLE NONE 1
LOQ C9 C10 SINGLE NONE 2
LOQ C9 C8 SINGLE NONE 3
LOQ C10 N SINGLE NONE 4
LOQ C8 C7 SINGLE NONE 5
LOQ C5 C6 DOUBLE NONE 6
LOQ C5 C4 SINGLE NONE 7
LOQ N C7 SINGLE NONE 8
LOQ N C4 SINGLE NONE 9
LOQ C6 C1 SINGLE NONE 10
LOQ C7 O DOUBLE NONE 11
LOQ C4 C3 DOUBLE NONE 12
LOQ C1 C SINGLE NONE 13
LOQ C1 C2 DOUBLE NONE 14
LOQ C3 C2 SINGLE NONE 15
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
LOQ MurckoScaffold S1 scaffold O=C1CCC(=O)N1c1ccccc1 InChI=1S/C10H9NO2/c12-9-6-7-10(13)11(9)8-4-2-1-3-5-8/h1-5H,6-7H2 ZTUKZULGOCFJET-UHFFFAOYSA-N
LOQ amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
LOQ phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
LOQ succinimide F3 fragment O=C1CCC(=O)N1 InChI=1S/C4H5NO2/c6-3-1-2-4(7)5-3/h1-2H2,(H,5,6,7) KZNICNPSHKQLFF-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
LOQ C4 S1 1
LOQ C5 S1 1
LOQ C6 S1 1
LOQ C7 S1 1
LOQ C8 S1 1
LOQ C10 S1 1
LOQ N S1 1
LOQ O S1 1
LOQ C1 S1 1
LOQ C2 S1 1
LOQ C3 S1 1
LOQ C9 S1 1
LOQ O1 S1 1
LOQ N F1 1
LOQ C10 F1 1
LOQ O1 F1 1
LOQ C9 F1 1
LOQ N F1 2
LOQ C7 F1 2
LOQ O F1 2
LOQ C8 F1 2
LOQ C4 F2 1
LOQ C5 F2 1
LOQ C6 F2 1
LOQ C1 F2 1
LOQ C2 F2 1
LOQ C3 F2 1
LOQ C8 F3 1
LOQ C7 F3 1
LOQ O F3 1
LOQ N F3 1
LOQ C10 F3 1
LOQ O1 F3 1
LOQ C9 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id LOQ
_pdbe_chem_comp_rdkit_properties.exactmw 189.079
_pdbe_chem_comp_rdkit_properties.amw 189.214
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 14
_pdbe_chem_comp_rdkit_properties.NumAtoms 25
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.273
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 97.788
_pdbe_chem_comp_rdkit_properties.tpsa 37.380
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.213
_pdbe_chem_comp_rdkit_properties.CrippenMR 51.816
_pdbe_chem_comp_rdkit_properties.chi0v 6.764
_pdbe_chem_comp_rdkit_properties.chi1v 3.579
_pdbe_chem_comp_rdkit_properties.chi2v 1.518
_pdbe_chem_comp_rdkit_properties.chi3v 1.518
_pdbe_chem_comp_rdkit_properties.chi4v 0.932
_pdbe_chem_comp_rdkit_properties.chi0n 17.764
_pdbe_chem_comp_rdkit_properties.chi1n 9.079
_pdbe_chem_comp_rdkit_properties.chi2n 1.518
_pdbe_chem_comp_rdkit_properties.chi3n 1.518
_pdbe_chem_comp_rdkit_properties.chi4n 0.932
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.640
_pdbe_chem_comp_rdkit_properties.kappa1 2.688
_pdbe_chem_comp_rdkit_properties.kappa2 3.253
_pdbe_chem_comp_rdkit_properties.kappa3 1.411
_pdbe_chem_comp_rdkit_properties.Phi 0.625
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
LOQ UniChem ChEMBL CHEMBL1078597
LOQ UniChem PDBe LOQ
LOQ UniChem ChEBI 170030
LOQ UniChem ZINC ZINC000000069314
LOQ UniChem eMolecules 1121582
LOQ UniChem fdasrs S56FSC7B26
LOQ UniChem Nikkaji J767.800B
LOQ UniChem 'EPA CompTox Dashboard' DTXSID70177713
LOQ UniChem SureChEMBL SCHEMBL1949985
LOQ UniChem 'PubChem TPHARMA' 16130760
LOQ UniChem PubChem 75335
LOQ UniChem Mcule MCULE-9247803206
LOQ UniChem ACTor 2314-79-6
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
LOQ C4 0.060 0.043 0.003 ETKDGv3 1
LOQ C5 0.802 -1.197 0.344 ETKDGv3 2
LOQ C6 2.141 -1.197 0.379 ETKDGv3 3
LOQ C7 -2.246 -0.642 0.871 ETKDGv3 4
LOQ C8 -3.689 -0.474 0.531 ETKDGv3 5
LOQ C10 -2.224 0.676 -0.967 ETKDGv3 6
LOQ N -1.379 0.042 -0.020 ETKDGv3 7
LOQ C 4.396 0.027 0.086 ETKDGv3 8
LOQ O -1.838 -1.291 1.871 ETKDGv3 9
LOQ C1 2.897 0.043 0.086 ETKDGv3 10
LOQ C2 2.228 1.160 -0.245 ETKDGv3 11
LOQ C3 0.750 1.162 -0.279 ETKDGv3 12
LOQ C9 -3.675 0.438 -0.712 ETKDGv3 13
LOQ O1 -1.791 1.335 -1.950 ETKDGv3 14
LOQ H1 0.266 -2.115 0.543 ETKDGv3 15
LOQ H2 2.669 -2.112 0.617 ETKDGv3 16
LOQ H3 -4.144 -1.460 0.296 ETKDGv3 17
LOQ H4 4.778 -0.811 0.707 ETKDGv3 18
LOQ H5 4.796 0.975 0.505 ETKDGv3 19
LOQ H6 4.765 -0.098 -0.953 ETKDGv3 20
LOQ H7 2.761 2.071 -0.487 ETKDGv3 21
LOQ H8 0.237 2.086 -0.511 ETKDGv3 22
LOQ H9 -4.190 1.401 -0.505 ETKDGv3 23
LOQ H10 -4.228 0.010 1.373 ETKDGv3 24
LOQ H11 -4.141 -0.071 -1.583 ETKDGv3 25
#