data_LPX
#
_chem_comp.id LPX
_chem_comp.name "(2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H44 N O7 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-05-01
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 453.550
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code LPX
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3CX9
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LPX O7 O7 O 0 1 N N N N N N 43.944 1.984 30.459 1.449 -1.514 -0.014 O7 LPX 1
LPX C6 C6 C 0 1 N N N N N N 44.892 1.239 30.334 1.554 -0.315 -0.113 C6 LPX 2
LPX O6 O6 O 0 1 N N N N N N 46.149 1.765 29.782 2.771 0.249 -0.185 O6 LPX 3
LPX C5 C5 C 0 1 N N N N N N 46.838 2.904 30.343 3.915 -0.645 -0.138 C5 LPX 4
LPX C4 C4 C 0 1 N N S N N N 47.621 2.522 31.618 5.204 0.173 -0.232 C4 LPX 5
LPX O5 O5 O 0 1 N N N N N N 47.952 3.693 32.399 5.273 0.808 -1.510 O5 LPX 6
LPX C3 C3 C 0 1 N N N N N N 48.867 1.659 31.330 6.409 -0.754 -0.057 C3 LPX 7
LPX O1 O1 O 0 1 N N N N N N 49.512 2.037 30.107 7.608 0.024 -0.029 O1 LPX 8
LPX P1 P1 P 0 1 N N R N N N 50.566 3.283 30.013 9.071 -0.626 0.143 P1 LPX 9
LPX O3 O3 O 0 1 N N N N N N 51.344 3.364 31.323 9.187 -1.311 1.595 O3 LPX 10
LPX O2 O2 O 0 1 N N N N N N 49.672 4.634 29.832 10.189 0.523 0.000 O2 LPX 11
LPX C1 C1 C 0 1 N N N N N N 49.741 5.719 30.763 11.592 0.249 0.001 C1 LPX 12
LPX C2 C2 C 0 1 N N N N N N 50.281 6.996 30.125 12.367 1.559 -0.152 C2 LPX 13
LPX N1 N1 N 0 1 N N N N N N 50.460 7.968 31.206 12.136 2.405 1.027 N1 LPX 14
LPX O4 O4 O 0 1 N N N N N N 51.327 3.125 28.714 9.281 -1.651 -0.904 O4 LPX 15
LPX C7 C7 C 0 1 N N N N N N 44.711 -0.202 30.750 0.320 0.549 -0.162 C7 LPX 16
LPX C8 C8 C 0 1 N N N N N N 44.661 -0.362 32.273 -0.925 -0.335 -0.069 C8 LPX 17
LPX C9 C9 C 0 1 N N N N N N 43.738 0.615 33.019 -2.178 0.541 -0.119 C9 LPX 18
LPX C10 C10 C 0 1 N N N N N N 44.160 0.849 34.485 -3.423 -0.343 -0.026 C10 LPX 19
LPX C11 C11 C 0 1 N N N N N N 44.917 2.172 34.695 -4.676 0.534 -0.075 C11 LPX 20
LPX C12 C12 C 0 1 N N N N N N 44.223 3.140 35.645 -5.921 -0.350 0.017 C12 LPX 21
LPX C13 C13 C 0 1 N N N N N N 44.323 4.537 35.062 -7.174 0.526 -0.032 C13 LPX 22
LPX C14 C14 C 0 1 N N N N N N 45.036 5.455 36.029 -8.419 -0.358 0.060 C14 LPX 23
LPX C15 C15 C 0 1 N N N N N N 44.173 6.640 36.453 -9.672 0.519 0.011 C15 LPX 24
LPX C16 C16 C 0 1 N N N N N N 44.658 7.254 37.769 -10.917 -0.365 0.103 C16 LPX 25
LPX C17 C17 C 0 1 N N N N N N 46.152 7.011 38.037 -12.170 0.512 0.054 C17 LPX 26
LPX C18 C18 C 0 1 N N N N N N 46.792 8.041 38.960 -13.415 -0.373 0.147 C18 LPX 27
LPX C19 C19 C 0 1 N N N N N N 48.272 7.726 39.177 -14.668 0.504 0.097 C19 LPX 28
LPX C20 C20 C 0 1 N N N N N N 49.162 7.864 37.929 -15.913 -0.380 0.190 C20 LPX 29
LPX C21 C21 C 0 1 N N N N N N 50.469 7.075 37.990 -17.166 0.496 0.140 C21 LPX 30
LPX H5 H5 H 0 1 N N N N N N 47.546 3.293 29.596 3.904 -1.200 0.800 H5 LPX 31
LPX H5A H5A H 0 1 N N N N N N 46.089 3.663 30.612 3.865 -1.343 -0.974 H5A LPX 32
LPX H4 H4 H 0 1 N N N N N N 46.949 1.890 32.217 5.212 0.930 0.552 H4 LPX 33
LPX HO5 HO5 H 0 1 N N N N N N 48.025 3.453 33.315 5.271 0.193 -2.256 HO5 LPX 34
LPX H3 H3 H 0 1 N N N N N N 49.581 1.785 32.157 6.311 -1.305 0.878 H3 LPX 35
LPX H3A H3A H 0 1 N N N N N N 48.542 0.612 31.235 6.451 -1.456 -0.890 H3A LPX 36
LPX HO3 HO3 H 0 1 N N N N N N 52.276 3.381 31.138 9.060 -0.697 2.331 HO3 LPX 37
LPX H1 H1 H 0 1 N N N N N N 48.728 5.919 31.143 11.868 -0.229 0.940 H1 LPX 38
LPX H1A H1A H 0 1 N N N N N N 50.428 5.428 31.571 11.832 -0.414 -0.830 H1A LPX 39
LPX H2 H2 H 0 1 N N N N N N 51.241 6.798 29.626 13.432 1.343 -0.241 H2 LPX 40
LPX H2A H2A H 0 1 N N N N N N 49.586 7.379 29.363 12.026 2.081 -1.046 H2A LPX 41
LPX HN1 HN1 H 0 1 N N N N N N 50.501 7.489 32.083 12.638 3.277 0.951 HN1 LPX 42
LPX HN1A HN1A H 0 0 N N N N N N 51.311 8.473 31.062 11.150 2.567 1.169 HN1A LPX 43
LPX H7 H7 H 0 1 N N N N N N 43.766 -0.573 30.327 0.333 1.248 0.674 H7 LPX 44
LPX H7A H7A H 0 1 N N N N N N 45.573 -0.774 30.377 0.303 1.105 -1.099 H7A LPX 45
LPX H8 H8 H 0 1 N N N N N N 44.303 -1.380 32.485 -0.937 -1.034 -0.905 H8 LPX 46
LPX H8A H8A H 0 1 N N N N N N 45.679 -0.151 32.633 -0.907 -0.891 0.869 H8A LPX 47
LPX H9 H9 H 0 1 N N N N N N 43.763 1.582 32.495 -2.165 1.241 0.718 H9 LPX 48
LPX H9A H9A H 0 1 N N N N N N 42.731 0.172 33.033 -2.195 1.097 -1.056 H9A LPX 49
LPX H10 H10 H 0 1 N N N N N N 43.252 0.870 35.105 -3.435 -1.042 -0.862 H10 LPX 50
LPX H10A H10A H 0 0 N N N N N N 44.842 0.032 34.765 -3.405 -0.898 0.912 H10A LPX 51
LPX H11 H11 H 0 1 N N N N N N 45.906 1.935 35.115 -4.663 1.233 0.761 H11 LPX 52
LPX H11A H11A H 0 0 N N N N N N 44.972 2.669 33.715 -4.694 1.089 -1.013 H11A LPX 53
LPX H12 H12 H 0 1 N N N N N N 43.166 2.858 35.759 -5.933 -1.049 -0.819 H12 LPX 54
LPX H12A H12A H 0 0 N N N N N N 44.704 3.108 36.634 -5.903 -0.906 0.955 H12A LPX 55
LPX H13 H13 H 0 1 N N N N N N 44.886 4.497 34.118 -7.162 1.225 0.804 H13 LPX 56
LPX H13A H13A H 0 0 N N N N N N 43.310 4.924 34.879 -7.192 1.082 -0.970 H13A LPX 57
LPX H14 H14 H 0 1 N N N N N N 45.301 4.878 36.927 -8.431 -1.057 -0.776 H14 LPX 58
LPX H14A H14A H 0 0 N N N N N N 45.927 5.853 35.520 -8.401 -0.913 0.998 H14A LPX 59
LPX H15 H15 H 0 1 N N N N N N 44.218 7.408 35.667 -9.660 1.218 0.847 H15 LPX 60
LPX H15A H15A H 0 0 N N N N N N 43.144 6.280 36.601 -9.690 1.074 -0.927 H15A LPX 61
LPX H16 H16 H 0 1 N N N N N N 44.488 8.340 37.725 -10.929 -1.064 -0.733 H16 LPX 62
LPX H16A H16A H 0 0 N N N N N N 44.096 6.773 38.583 -10.899 -0.921 1.041 H16A LPX 63
LPX H17 H17 H 0 1 N N N N N N 46.256 6.022 38.507 -12.158 1.211 0.890 H17 LPX 64
LPX H17A H17A H 0 0 N N N N N N 46.668 7.084 37.068 -12.188 1.067 -0.884 H17A LPX 65
LPX H18 H18 H 0 1 N N N N N N 46.700 9.038 38.505 -13.428 -1.072 -0.690 H18 LPX 66
LPX H18A H18A H 0 0 N N N N N N 46.278 8.014 39.932 -13.397 -0.928 1.084 H18A LPX 67
LPX H19 H19 H 0 1 N N N N N N 48.653 8.425 39.936 -14.656 1.203 0.933 H19 LPX 68
LPX H19A H19A H 0 0 N N N N N N 48.322 6.668 39.475 -14.686 1.059 -0.841 H19A LPX 69
LPX H20 H20 H 0 1 N N N N N N 48.588 7.498 37.065 -15.926 -1.079 -0.647 H20 LPX 70
LPX H20A H20A H 0 0 N N N N N N 49.439 8.926 37.855 -15.896 -0.936 1.127 H20A LPX 71
LPX H21 H21 H 0 1 N N N N N N 50.831 6.885 36.969 -18.053 -0.133 0.206 H21 LPX 72
LPX H21A H21A H 0 0 N N N N N N 51.222 7.655 38.544 -17.154 1.196 0.976 H21A LPX 73
LPX H21B H21B H 0 0 N N N N N N 50.295 6.117 38.501 -17.184 1.052 -0.798 H21B LPX 74
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LPX O7 C6 DOUB N N 1
LPX C6 O6 SING N N 2
LPX C6 C7 SING N N 3
LPX O6 C5 SING N N 4
LPX C5 C4 SING N N 5
LPX C4 O5 SING N N 6
LPX C4 C3 SING N N 7
LPX C3 O1 SING N N 8
LPX O1 P1 SING N N 9
LPX P1 O3 SING N N 10
LPX P1 O2 SING N N 11
LPX P1 O4 DOUB N N 12
LPX O2 C1 SING N N 13
LPX C1 C2 SING N N 14
LPX C2 N1 SING N N 15
LPX C7 C8 SING N N 16
LPX C8 C9 SING N N 17
LPX C9 C10 SING N N 18
LPX C10 C11 SING N N 19
LPX C11 C12 SING N N 20
LPX C12 C13 SING N N 21
LPX C13 C14 SING N N 22
LPX C14 C15 SING N N 23
LPX C15 C16 SING N N 24
LPX C16 C17 SING N N 25
LPX C17 C18 SING N N 26
LPX C18 C19 SING N N 27
LPX C19 C20 SING N N 28
LPX C20 C21 SING N N 29
LPX C5 H5 SING N N 30
LPX C5 H5A SING N N 31
LPX C4 H4 SING N N 32
LPX O5 HO5 SING N N 33
LPX C3 H3 SING N N 34
LPX C3 H3A SING N N 35
LPX O3 HO3 SING N N 36
LPX C1 H1 SING N N 37
LPX C1 H1A SING N N 38
LPX C2 H2 SING N N 39
LPX C2 H2A SING N N 40
LPX N1 HN1 SING N N 41
LPX N1 HN1A SING N N 42
LPX C7 H7 SING N N 43
LPX C7 H7A SING N N 44
LPX C8 H8 SING N N 45
LPX C8 H8A SING N N 46
LPX C9 H9 SING N N 47
LPX C9 H9A SING N N 48
LPX C10 H10 SING N N 49
LPX C10 H10A SING N N 50
LPX C11 H11 SING N N 51
LPX C11 H11A SING N N 52
LPX C12 H12 SING N N 53
LPX C12 H12A SING N N 54
LPX C13 H13 SING N N 55
LPX C13 H13A SING N N 56
LPX C14 H14 SING N N 57
LPX C14 H14A SING N N 58
LPX C15 H15 SING N N 59
LPX C15 H15A SING N N 60
LPX C16 H16 SING N N 61
LPX C16 H16A SING N N 62
LPX C17 H17 SING N N 63
LPX C17 H17A SING N N 64
LPX C18 H18 SING N N 65
LPX C18 H18A SING N N 66
LPX C19 H19 SING N N 67
LPX C19 H19A SING N N 68
LPX C20 H20 SING N N 69
LPX C20 H20A SING N N 70
LPX C21 H21 SING N N 71
LPX C21 H21A SING N N 72
LPX C21 H21B SING N N 73
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LPX SMILES ACDLabs 10.04 O=C(OCC(O)COP(=O)(OCCN)O)CCCCCCCCCCCCCCC
LPX SMILES_CANONICAL CACTVS 3.341 CCCCCCCCCCCCCCCC(=O)OC[C@H](O)CO[P@@](O)(=O)OCCN
LPX SMILES CACTVS 3.341 CCCCCCCCCCCCCCCC(=O)OC[CH](O)CO[P](O)(=O)OCCN
LPX SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CCCCCCCCCCCCCCCC(=O)OC[C@@H](CO[P@](=O)(O)OCCN)O
LPX SMILES "OpenEye OEToolkits" 1.5.0 CCCCCCCCCCCCCCCC(=O)OCC(COP(=O)(O)OCCN)O
LPX InChI InChI 1.03 InChI=1S/C21H44NO7P/c1-2-3-4-5-6-7-8-9-10-11-12-13-14-15-21(24)27-18-20(23)19-29-30(25,26)28-17-16-22/h20,23H,2-19,22H2,1H3,(H,25,26)/t20-/m0/s1
LPX InChIKey InChI 1.03 YVYMBNSKXOXSKW-FQEVSTJZSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LPX "SYSTEMATIC NAME" ACDLabs 10.04 "(2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate"
LPX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S)-3-(2-aminoethoxy-hydroxy-phosphoryl)oxy-2-hydroxy-propyl] hexadecanoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LPX 'Create component' 2008-05-01 PDBJ
LPX 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
LPX O7 O 16.796 -2.107 1
LPX C6 C 16.796 -0.608 2
LPX O6 O 15.497 0.142 3
LPX C5 C 14.198 -0.608 4
LPX C4 C 12.899 0.142 5
LPX O5 O 12.899 1.643 6
LPX C3 C 11.600 -0.608 7
LPX O1 O 10.301 0.142 8
LPX P1 P 9.002 -0.608 9
LPX O3 O 8.252 0.692 10
LPX O2 O 7.702 -1.357 11
LPX C1 C 6.404 -0.608 12
LPX C2 C 5.104 -1.357 13
LPX N1 N 3.805 -0.608 14
LPX O4 O 9.752 -1.907 15
LPX C7 C 18.095 0.142 16
LPX C8 C 19.394 -0.608 17
LPX C9 C 20.693 0.142 18
LPX C10 C 21.992 -0.608 19
LPX C11 C 23.291 0.142 20
LPX C12 C 24.590 -0.608 21
LPX C13 C 25.889 0.142 22
LPX C14 C 27.188 -0.608 23
LPX C15 C 28.487 0.142 24
LPX C16 C 29.786 -0.608 25
LPX C17 C 31.085 0.142 26
LPX C18 C 32.384 -0.608 27
LPX C19 C 33.683 0.142 28
LPX C20 C 34.982 -0.608 29
LPX C21 C 36.281 0.142 30
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
LPX O7 C6 DOUBLE NONE 1
LPX C6 O6 SINGLE NONE 2
LPX C6 C7 SINGLE NONE 3
LPX O6 C5 SINGLE NONE 4
LPX C5 C4 SINGLE NONE 5
LPX C4 O5 SINGLE BEGINWEDGE 6
LPX C4 C3 SINGLE NONE 7
LPX C3 O1 SINGLE NONE 8
LPX O1 P1 SINGLE NONE 9
LPX P1 O3 SINGLE BEGINDASH 10
LPX P1 O2 SINGLE NONE 11
LPX P1 O4 DOUBLE NONE 12
LPX O2 C1 SINGLE NONE 13
LPX C1 C2 SINGLE NONE 14
LPX C2 N1 SINGLE NONE 15
LPX C7 C8 SINGLE NONE 16
LPX C8 C9 SINGLE NONE 17
LPX C9 C10 SINGLE NONE 18
LPX C10 C11 SINGLE NONE 19
LPX C11 C12 SINGLE NONE 20
LPX C12 C13 SINGLE NONE 21
LPX C13 C14 SINGLE NONE 22
LPX C14 C15 SINGLE NONE 23
LPX C15 C16 SINGLE NONE 24
LPX C16 C17 SINGLE NONE 25
LPX C17 C18 SINGLE NONE 26
LPX C18 C19 SINGLE NONE 27
LPX C19 C20 SINGLE NONE 28
LPX C20 C21 SINGLE NONE 29
#
_pdbe_chem_comp_substructure.comp_id LPX
_pdbe_chem_comp_substructure.substructure_name phosphate
_pdbe_chem_comp_substructure.id F1
_pdbe_chem_comp_substructure.substructure_type fragment
_pdbe_chem_comp_substructure.substructure_smiles O=P(O)(O)O
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)
_pdbe_chem_comp_substructure.substructure_inchikeys NBIIXXVUZAFLBC-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
LPX O1 F1 1
LPX P1 F1 1
LPX O4 F1 1
LPX O3 F1 1
LPX O2 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id LPX
_pdbe_chem_comp_rdkit_properties.exactmw 453.286
_pdbe_chem_comp_rdkit_properties.amw 453.557
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 26
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 30
_pdbe_chem_comp_rdkit_properties.NumAtoms 74
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.952
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 244.126
_pdbe_chem_comp_rdkit_properties.tpsa 128.310
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.464
_pdbe_chem_comp_rdkit_properties.CrippenMR 118.062
_pdbe_chem_comp_rdkit_properties.chi0v 15.147
_pdbe_chem_comp_rdkit_properties.chi1v 8.139
_pdbe_chem_comp_rdkit_properties.chi2v 2.234
_pdbe_chem_comp_rdkit_properties.chi3v 2.234
_pdbe_chem_comp_rdkit_properties.chi4v 1.142
_pdbe_chem_comp_rdkit_properties.chi0n 58.252
_pdbe_chem_comp_rdkit_properties.chi1n 28.390
_pdbe_chem_comp_rdkit_properties.chi2n 1.604
_pdbe_chem_comp_rdkit_properties.chi3n 1.604
_pdbe_chem_comp_rdkit_properties.chi4n 0.757
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.500
_pdbe_chem_comp_rdkit_properties.kappa1 4.559
_pdbe_chem_comp_rdkit_properties.kappa2 20.405
_pdbe_chem_comp_rdkit_properties.kappa3 20.760
_pdbe_chem_comp_rdkit_properties.Phi 3.101
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
LPX UniChem PDBe LPX
LPX UniChem ZINC ZINC000032840705
LPX UniChem PubChem 25229539
LPX UniChem PubChem 72199749
LPX UniChem Nikkaji J221.516K
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
LPX O7 4.010 1.749 -4.661 ETKDGv3 1
LPX C6 3.475 0.908 -3.888 ETKDGv3 2
LPX O6 4.219 -0.144 -3.345 ETKDGv3 3
LPX C5 5.627 -0.290 -3.526 ETKDGv3 4
LPX C4 6.412 0.746 -2.704 ETKDGv3 5
LPX O5 7.786 0.491 -2.845 ETKDGv3 6
LPX C3 6.024 0.713 -1.217 ETKDGv3 7
LPX O1 6.279 -0.566 -0.683 ETKDGv3 8
LPX P1 5.750 -0.594 0.940 ETKDGv3 9
LPX O3 6.539 0.603 1.845 ETKDGv3 10
LPX O2 6.057 -2.127 1.619 ETKDGv3 11
LPX C1 7.430 -2.410 1.482 ETKDGv3 12
LPX C2 7.729 -3.795 2.065 ETKDGv3 13
LPX N1 7.488 -3.842 3.507 ETKDGv3 14
LPX O4 4.259 -0.344 0.992 ETKDGv3 15
LPX C7 2.035 1.055 -3.510 ETKDGv3 16
LPX C8 1.915 1.639 -2.097 ETKDGv3 17
LPX C9 0.459 1.925 -1.698 ETKDGv3 18
LPX C10 -0.358 0.638 -1.487 ETKDGv3 19
LPX C11 -1.719 0.901 -0.823 ETKDGv3 20
LPX C12 -2.707 1.609 -1.767 ETKDGv3 21
LPX C13 -4.072 1.866 -1.106 ETKDGv3 22
LPX C14 -4.917 0.590 -0.974 ETKDGv3 23
LPX C15 -6.306 0.911 -0.402 ETKDGv3 24
LPX C16 -7.241 -0.312 -0.380 ETKDGv3 25
LPX C17 -6.751 -1.496 0.479 ETKDGv3 26
LPX C18 -6.443 -1.152 1.947 ETKDGv3 27
LPX C19 -7.671 -0.618 2.704 ETKDGv3 28
LPX C20 -7.425 -0.502 4.216 ETKDGv3 29
LPX C21 -6.438 0.610 4.568 ETKDGv3 30
LPX H5 5.882 -0.192 -4.604 ETKDGv3 31
LPX H5A 5.918 -1.314 -3.207 ETKDGv3 32
LPX H4 6.180 1.759 -3.106 ETKDGv3 33
LPX HO5 8.262 1.316 -2.565 ETKDGv3 34
LPX H3 6.625 1.484 -0.685 ETKDGv3 35
LPX H3A 4.947 0.982 -1.127 ETKDGv3 36
LPX HO3 7.467 0.618 1.500 ETKDGv3 37
LPX H1 8.051 -1.659 2.020 ETKDGv3 38
LPX H1A 7.723 -2.429 0.408 ETKDGv3 39
LPX H2 8.792 -4.052 1.868 ETKDGv3 40
LPX H2A 7.096 -4.557 1.561 ETKDGv3 41
LPX HN1 8.067 -3.105 3.973 ETKDGv3 42
LPX HN1A 6.483 -3.624 3.693 ETKDGv3 43
LPX H7 1.559 0.053 -3.553 ETKDGv3 44
LPX H7A 1.523 1.718 -4.241 ETKDGv3 45
LPX H8 2.377 0.946 -1.359 ETKDGv3 46
LPX H8A 2.478 2.598 -2.055 ETKDGv3 47
LPX H9 0.473 2.505 -0.749 ETKDGv3 48
LPX H9A -0.015 2.560 -2.476 ETKDGv3 49
LPX H10 0.216 -0.050 -0.827 ETKDGv3 50
LPX H10A -0.516 0.120 -2.457 ETKDGv3 51
LPX H11 -2.138 -0.082 -0.523 ETKDGv3 52
LPX H11A -1.577 1.503 0.101 ETKDGv3 53
LPX H12 -2.288 2.594 -2.059 ETKDGv3 54
LPX H12A -2.844 1.012 -2.695 ETKDGv3 55
LPX H13 -4.624 2.596 -1.738 ETKDGv3 56
LPX H13A -3.926 2.330 -0.106 ETKDGv3 57
LPX H14 -4.402 -0.121 -0.298 ETKDGv3 58
LPX H14A -5.031 0.116 -1.974 ETKDGv3 59
LPX H15 -6.209 1.340 0.617 ETKDGv3 60
LPX H15A -6.786 1.688 -1.036 ETKDGv3 61
LPX H16 -7.383 -0.672 -1.422 ETKDGv3 62
LPX H16A -8.242 0.011 -0.022 ETKDGv3 63
LPX H17 -7.529 -2.291 0.454 ETKDGv3 64
LPX H17A -5.843 -1.936 0.016 ETKDGv3 65
LPX H18 -5.610 -0.421 1.994 ETKDGv3 66
LPX H18A -6.088 -2.081 2.444 ETKDGv3 67
LPX H19 -7.967 0.375 2.304 ETKDGv3 68
LPX H19A -8.523 -1.315 2.546 ETKDGv3 69
LPX H20 -8.394 -0.278 4.712 ETKDGv3 70
LPX H20A -7.057 -1.470 4.620 ETKDGv3 71
LPX H21 -6.765 1.575 4.128 ETKDGv3 72
LPX H21A -5.420 0.362 4.202 ETKDGv3 73
LPX H21B -6.390 0.724 5.672 ETKDGv3 74
#