data_LR4
#
_chem_comp.id LR4
_chem_comp.name
(4~{S})-2-azanyl-4-[3-[6-[(2~{S})-2,4-dimethylpiperazin-1-yl]pyridin-2-yl]-1,2,4-oxadiazol-5-yl]-4-methyl-6,7-dihydro-5~{H}-1-benzothiophene-3-carbonitrile
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H27 N7 O S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms
(4S)-2-azanyl-4-[3-[6-[(2S)-2,4-dimethylpiperazin-1-yl]pyridin-2-yl]-1,2,4-oxadiazol-5-yl]-4-methyl-6,7-dihydro-5H-1-benzothiophene-3-carbonitrile
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-07-11
_chem_comp.pdbx_modified_date 2023-06-02
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 449.572
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code LR4
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 8AZR
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LR4 C4 C1 C 0 1 N N S N N N 18.020 0.054 6.123 -3.338 -1.285 -0.770 C4 LR4 1
LR4 C5 C2 C 0 1 Y N N N N N 16.138 0.297 4.424 -5.089 0.012 0.495 C5 LR4 2
LR4 C6 C3 C 0 1 Y N N N N N 17.160 -0.427 4.956 -3.989 -0.006 -0.266 C6 LR4 3
LR4 C7 C4 C 0 1 Y N N N N N 17.270 -1.713 4.352 -3.492 1.328 -0.554 C7 LR4 4
LR4 C8 C5 C 0 1 Y N N N N N 16.316 -1.940 3.362 -4.247 2.319 0.008 C8 LR4 5
LR4 C10 C6 C 0 1 N N N N N N 17.668 -0.756 7.385 -3.696 -1.498 -2.242 C10 LR4 6
LR4 C17 C7 C 0 1 Y N N N N N 22.831 -1.113 6.090 1.276 -0.664 1.029 C17 LR4 7
LR4 C20 C8 C 0 1 Y N N N N N 25.255 -2.137 6.839 3.408 -0.191 2.665 C20 LR4 8
LR4 C21 C9 C 0 1 Y N N N N N 24.106 -2.577 7.470 2.142 -0.231 3.221 C21 LR4 9
LR4 C22 C10 C 0 1 Y N N N N N 22.878 -2.068 7.098 1.059 -0.472 2.389 C22 LR4 10
LR4 C26 C11 C 0 1 N N S N N N 26.095 0.393 4.110 4.760 -0.564 -0.725 C26 LR4 11
LR4 C1 C12 C 0 1 N N N N N N 15.679 1.644 4.901 -5.830 -1.228 0.957 C1 LR4 12
LR4 C11 C13 C 0 1 Y N N N N N 19.503 -0.111 5.760 -1.841 -1.184 -0.623 C11 LR4 13
LR4 C14 C14 C 0 1 Y N N N N N 21.532 -0.536 5.685 0.124 -0.923 0.130 C14 LR4 14
LR4 C19 C15 C 0 1 Y N N N N N 25.128 -1.160 5.816 3.556 -0.381 1.293 C19 LR4 15
LR4 C2 C16 C 0 1 N N N N N N 16.252 1.915 6.300 -5.387 -2.415 0.097 C2 LR4 16
LR4 C23 C17 C 0 1 N N N N N N 18.258 -2.697 4.673 -2.327 1.580 -1.348 C23 LR4 17
LR4 C27 C18 C 0 1 N N N N N N 26.962 0.206 2.848 6.179 -0.593 -1.298 C27 LR4 18
LR4 C29 C19 C 0 1 N N N N N N 28.372 -1.423 4.028 6.918 0.899 0.459 C29 LR4 19
LR4 C3 C20 C 0 1 N N N N N N 17.737 1.563 6.354 -3.856 -2.461 0.060 C3 LR4 20
LR4 C30 C21 C 0 1 N N N N N N 27.598 -1.224 5.339 5.499 0.928 1.032 C30 LR4 21
LR4 C31 C22 C 0 1 N N N N N N 29.238 -0.274 2.017 8.194 0.718 -1.591 C31 LR4 22
LR4 C32 C23 C 0 1 N N N N N N 26.353 1.740 4.768 3.967 0.569 -1.380 C32 LR4 23
LR4 N13 N1 N 0 1 Y N N N N N 21.348 0.178 4.607 0.183 -1.218 -1.143 N13 LR4 24
LR4 N15 N2 N 0 1 Y N N N N N 20.390 -0.742 6.440 -1.184 -0.902 0.474 N15 LR4 25
LR4 N16 N3 N 0 1 N N N N N N 16.137 -3.044 2.608 -3.987 3.673 -0.117 N16 LR4 26
LR4 N18 N4 N 0 1 Y N N N N N 23.926 -0.661 5.454 2.504 -0.614 0.526 N18 LR4 27
LR4 N24 N5 N 0 1 N N N N N N 19.061 -3.489 4.886 -1.403 1.779 -1.977 N24 LR4 28
LR4 N25 N6 N 0 1 N N N N N N 26.234 -0.710 5.085 4.824 -0.342 0.726 N25 LR4 29
LR4 N28 N7 N 0 1 N N N N N N 28.371 -0.162 3.227 6.853 0.677 -0.992 N28 LR4 30
LR4 O12 O1 O 0 1 Y N N N N N 19.953 0.474 4.646 -0.934 -1.372 -1.588 O12 LR4 31
LR4 S9 S1 S 0 1 Y N N N N N 15.290 -0.564 3.175 -5.551 1.661 0.882 S9 LR4 32
LR4 H1 H1 H 0 1 N N N N N N 18.286 -0.411 8.227 -4.779 -1.565 -2.346 H1 LR4 33
LR4 H2 H2 H 0 1 N N N N N N 16.605 -0.612 7.628 -3.326 -0.659 -2.831 H2 LR4 34
LR4 H3 H3 H 0 1 N N N N N N 17.861 -1.823 7.201 -3.238 -2.421 -2.597 H3 LR4 35
LR4 H4 H4 H 0 1 N N N N N N 26.223 -2.526 7.117 4.272 -0.013 3.287 H4 LR4 36
LR4 H5 H5 H 0 1 N N N N N N 24.169 -3.318 8.253 2.001 -0.087 4.282 H5 LR4 37
LR4 H6 H6 H 0 1 N N N N N N 21.973 -2.405 7.581 0.057 -0.509 2.793 H6 LR4 38
LR4 H7 H7 H 0 1 N N N N N N 25.048 0.400 3.772 4.267 -1.516 -0.925 H7 LR4 39
LR4 H8 H8 H 0 1 N N N N N N 16.031 2.419 4.204 -5.594 -1.426 2.003 H8 LR4 40
LR4 H9 H9 H 0 1 N N N N N N 14.580 1.662 4.945 -6.903 -1.075 0.844 H9 LR4 41
LR4 H10 H10 H 0 1 N N N N N N 16.125 2.980 6.542 -5.769 -3.340 0.528 H10 LR4 42
LR4 H11 H11 H 0 1 N N N N N N 15.709 1.304 7.037 -5.772 -2.296 -0.915 H11 LR4 43
LR4 H12 H12 H 0 1 N N N N N N 26.975 1.145 2.275 6.735 -1.417 -0.850 H12 LR4 44
LR4 H13 H13 H 0 1 N N N N N N 26.532 -0.596 2.229 6.132 -0.729 -2.378 H13 LR4 45
LR4 H14 H14 H 0 1 N N N N N N 27.896 -2.224 3.444 7.410 1.851 0.660 H14 LR4 46
LR4 H15 H15 H 0 1 N N N N N N 29.410 -1.705 4.259 7.482 0.092 0.927 H15 LR4 47
LR4 H16 H16 H 0 1 N N N N N N 18.126 1.844 7.344 -3.531 -3.398 -0.393 H16 LR4 48
LR4 H17 H17 H 0 1 N N N N N N 18.261 2.139 5.577 -3.465 -2.391 1.075 H17 LR4 49
LR4 H18 H18 H 0 1 N N N N N N 27.526 -2.189 5.862 5.545 1.064 2.112 H18 LR4 50
LR4 H19 H19 H 0 1 N N N N N N 28.140 -0.504 5.970 4.943 1.752 0.585 H19 LR4 51
LR4 H20 H20 H 0 1 N N N N N N 30.260 -0.543 2.321 8.111 0.618 -2.673 H20 LR4 52
LR4 H21 H21 H 0 1 N N N N N N 28.837 -1.051 1.350 8.671 1.668 -1.349 H21 LR4 53
LR4 H22 H22 H 0 1 N N N N N N 29.255 0.690 1.488 8.794 -0.101 -1.195 H22 LR4 54
LR4 H23 H23 H 0 1 N N N N N N 25.720 1.839 5.662 4.461 1.520 -1.181 H23 LR4 55
LR4 H24 H24 H 0 1 N N N N N N 27.412 1.809 5.059 3.920 0.403 -2.457 H24 LR4 56
LR4 H25 H25 H 0 1 N N N N N N 26.114 2.546 4.059 2.957 0.590 -0.971 H25 LR4 57
LR4 H26 H26 H 0 1 N N N N N N 15.365 -2.903 1.988 -3.223 3.974 -0.633 H26 LR4 58
LR4 H27 H27 H 0 1 N N N N N N 16.965 -3.222 2.075 -4.568 4.320 0.312 H27 LR4 59
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LR4 C31 N28 SING N N 1
LR4 N16 C8 SING N N 2
LR4 C27 N28 SING N N 3
LR4 C27 C26 SING N N 4
LR4 S9 C8 SING Y N 5
LR4 S9 C5 SING Y N 6
LR4 N28 C29 SING N N 7
LR4 C8 C7 DOUB Y N 8
LR4 C29 C30 SING N N 9
LR4 C26 C32 SING N N 10
LR4 C26 N25 SING N N 11
LR4 C7 C23 SING N N 12
LR4 C7 C6 SING Y N 13
LR4 C5 C1 SING N N 14
LR4 C5 C6 DOUB Y N 15
LR4 N13 O12 SING Y N 16
LR4 N13 C14 DOUB Y N 17
LR4 O12 C11 SING Y N 18
LR4 C23 N24 TRIP N N 19
LR4 C1 C2 SING N N 20
LR4 C6 C4 SING N N 21
LR4 N25 C30 SING N N 22
LR4 N25 C19 SING N N 23
LR4 N18 C19 DOUB Y N 24
LR4 N18 C17 SING Y N 25
LR4 C14 C17 SING N N 26
LR4 C14 N15 SING Y N 27
LR4 C11 C4 SING N N 28
LR4 C11 N15 DOUB Y N 29
LR4 C19 C20 SING Y N 30
LR4 C17 C22 DOUB Y N 31
LR4 C4 C3 SING N N 32
LR4 C4 C10 SING N N 33
LR4 C2 C3 SING N N 34
LR4 C20 C21 DOUB Y N 35
LR4 C22 C21 SING Y N 36
LR4 C10 H1 SING N N 37
LR4 C10 H2 SING N N 38
LR4 C10 H3 SING N N 39
LR4 C20 H4 SING N N 40
LR4 C21 H5 SING N N 41
LR4 C22 H6 SING N N 42
LR4 C26 H7 SING N N 43
LR4 C1 H8 SING N N 44
LR4 C1 H9 SING N N 45
LR4 C2 H10 SING N N 46
LR4 C2 H11 SING N N 47
LR4 C27 H12 SING N N 48
LR4 C27 H13 SING N N 49
LR4 C29 H14 SING N N 50
LR4 C29 H15 SING N N 51
LR4 C3 H16 SING N N 52
LR4 C3 H17 SING N N 53
LR4 C30 H18 SING N N 54
LR4 C30 H19 SING N N 55
LR4 C31 H20 SING N N 56
LR4 C31 H21 SING N N 57
LR4 C31 H22 SING N N 58
LR4 C32 H23 SING N N 59
LR4 C32 H24 SING N N 60
LR4 C32 H25 SING N N 61
LR4 N16 H26 SING N N 62
LR4 N16 H27 SING N N 63
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LR4 InChI InChI 1.06 InChI=1S/C23H27N7OS/c1-14-13-29(3)10-11-30(14)18-8-4-6-16(26-18)21-27-22(31-28-21)23(2)9-5-7-17-19(23)15(12-24)20(25)32-17/h4,6,8,14H,5,7,9-11,13,25H2,1-3H3/t14-,23-/m0/s1
LR4 InChIKey InChI 1.06 YZNVUBRDUJUVPB-PSLXWICFSA-N
LR4 SMILES_CANONICAL CACTVS 3.385 "C[C@H]1CN(C)CCN1c2cccc(n2)c3noc(n3)[C@@]4(C)CCCc5sc(N)c(C#N)c45"
LR4 SMILES CACTVS 3.385 "C[CH]1CN(C)CCN1c2cccc(n2)c3noc(n3)[C]4(C)CCCc5sc(N)c(C#N)c45"
LR4 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "C[C@H]1CN(CCN1c2cccc(n2)c3nc(on3)[C@]4(CCCc5c4c(c(s5)N)C#N)C)C"
LR4 SMILES "OpenEye OEToolkits" 3.1.0.0 "CC1CN(CCN1c2cccc(n2)c3nc(on3)C4(CCCc5c4c(c(s5)N)C#N)C)C"
#
_pdbx_chem_comp_identifier.comp_id LR4
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 3.1.0.0
_pdbx_chem_comp_identifier.identifier
(4~{S})-2-azanyl-4-[3-[6-[(2~{S})-2,4-dimethylpiperazin-1-yl]pyridin-2-yl]-1,2,4-oxadiazol-5-yl]-4-methyl-6,7-dihydro-5~{H}-1-benzothiophene-3-carbonitrile
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id LR4
_pdbx_chem_comp_synonyms.name
(4S)-2-azanyl-4-[3-[6-[(2S)-2,4-dimethylpiperazin-1-yl]pyridin-2-yl]-1,2,4-oxadiazol-5-yl]-4-methyl-6,7-dihydro-5H-1-benzothiophene-3-carbonitrile
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LR4 'Create component' 2022-09-12 PDBE
LR4 'Initial release' 2023-06-07 RCSB
#
_pdbe_chem_comp_synonyms.comp_id LR4
_pdbe_chem_comp_synonyms.name
'(4S)-2-azanyl-4-[3-[6-[(2S)-2,4-dimethylpiperazin-1-yl]pyridin-2-yl]-1,2,4-oxadiazol-5-yl]-4-methyl-6,7-dihydro-5H-1-benzothiophene-3-carbonitrile'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
LR4 C4 C 5.554 -3.489 1
LR4 C5 C 6.853 -5.739 2
LR4 C6 C 6.853 -4.239 3
LR4 C7 C 8.272 -3.782 4
LR4 C8 C 9.147 -4.989 5
LR4 C10 C 6.304 -2.190 6
LR4 C17 C 4.456 1.675 7
LR4 C20 C 4.769 4.659 8
LR4 C21 C 3.399 4.049 9
LR4 C22 C 3.242 2.557 10
LR4 C26 C 8.567 3.506 11
LR4 C1 C 5.554 -6.489 12
LR4 C11 C 4.804 -2.190 13
LR4 C14 C 4.299 0.184 14
LR4 C19 C 5.983 3.777 15
LR4 C2 C 4.255 -5.739 16
LR4 C23 C 8.738 -2.357 17
LR4 C27 C 9.937 4.116 18
LR4 C29 C 8.880 6.489 19
LR4 C3 C 4.255 -4.239 20
LR4 C30 C 7.510 5.879 21
LR4 C31 C 11.464 6.218 22
LR4 C32 C 8.410 2.014 23
LR4 N13 N 3.000 -0.566 24
LR4 N15 N 5.414 -0.820 25
LR4 N16 N 10.647 -4.989 26
LR4 N18 N 5.826 2.286 27
LR4 N24 N 9.204 -0.931 28
LR4 N25 N 7.353 4.388 29
LR4 N28 N 10.094 5.608 30
LR4 O12 O 3.312 -2.034 31
LR4 S9 S 8.272 -6.197 32
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
LR4 C31 N28 SINGLE NONE 1
LR4 N16 C8 SINGLE NONE 2
LR4 C27 N28 SINGLE NONE 3
LR4 C27 C26 SINGLE NONE 4
LR4 S9 C8 SINGLE NONE 5
LR4 S9 C5 SINGLE NONE 6
LR4 N28 C29 SINGLE NONE 7
LR4 C8 C7 DOUBLE NONE 8
LR4 C29 C30 SINGLE NONE 9
LR4 C26 C32 SINGLE BEGINDASH 10
LR4 C26 N25 SINGLE NONE 11
LR4 C7 C23 SINGLE NONE 12
LR4 C7 C6 SINGLE NONE 13
LR4 C5 C1 SINGLE NONE 14
LR4 C5 C6 DOUBLE NONE 15
LR4 N13 O12 SINGLE NONE 16
LR4 N13 C14 DOUBLE NONE 17
LR4 O12 C11 SINGLE NONE 18
LR4 C23 N24 TRIPLE NONE 19
LR4 C1 C2 SINGLE NONE 20
LR4 C6 C4 SINGLE NONE 21
LR4 N25 C30 SINGLE NONE 22
LR4 N25 C19 SINGLE NONE 23
LR4 N18 C19 SINGLE NONE 24
LR4 N18 C17 DOUBLE NONE 25
LR4 C14 C17 SINGLE NONE 26
LR4 C14 N15 SINGLE NONE 27
LR4 C11 C4 SINGLE NONE 28
LR4 C11 N15 DOUBLE NONE 29
LR4 C19 C20 DOUBLE NONE 30
LR4 C17 C22 SINGLE NONE 31
LR4 C4 C3 SINGLE NONE 32
LR4 C4 C10 SINGLE BEGINWEDGE 33
LR4 C2 C3 SINGLE NONE 34
LR4 C20 C21 SINGLE NONE 35
LR4 C22 C21 DOUBLE NONE 36
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
LR4 MurckoScaffold S1 scaffold c1cc(-c2noc(C3CCCc4sccc43)n2)nc(N2CCNCC2)c1 InChI=1S/C19H21N5OS/c1-3-14(13-7-12-26-16(13)5-1)19-22-18(23-25-19)15-4-2-6-17(21-15)24-10-8-20-9-11-24/h2,4,6-7,12,14,20H,1,3,5,8-11H2 DUIGBQRFHYFQIM-UHFFFAOYSA-N
LR4 isoxadiazole F1 fragment c1ncon1 InChI=1S/C2H2N2O/c1-3-2-5-4-1/h1-2H BBVIDBNAYOIXOE-UHFFFAOYSA-N
LR4 piperazine F2 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
LR4 pyridine F3 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
LR4 thiophen F4 fragment c1ccsc1 InChI=1S/C4H4S/c1-2-4-5-3-1/h1-4H YTPLMLYBLZKORZ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
LR4 C4 S1 1
LR4 C5 S1 1
LR4 C6 S1 1
LR4 C7 S1 1
LR4 C8 S1 1
LR4 C17 S1 1
LR4 C20 S1 1
LR4 C21 S1 1
LR4 C22 S1 1
LR4 C26 S1 1
LR4 C1 S1 1
LR4 C11 S1 1
LR4 C14 S1 1
LR4 C19 S1 1
LR4 C2 S1 1
LR4 C27 S1 1
LR4 C29 S1 1
LR4 C3 S1 1
LR4 C30 S1 1
LR4 N13 S1 1
LR4 N15 S1 1
LR4 N18 S1 1
LR4 N25 S1 1
LR4 N28 S1 1
LR4 O12 S1 1
LR4 S9 S1 1
LR4 N13 F1 1
LR4 C14 F1 1
LR4 N15 F1 1
LR4 C11 F1 1
LR4 O12 F1 1
LR4 N25 F2 1
LR4 C26 F2 1
LR4 C27 F2 1
LR4 N28 F2 1
LR4 C29 F2 1
LR4 C30 F2 1
LR4 C17 F3 1
LR4 C22 F3 1
LR4 C21 F3 1
LR4 C20 F3 1
LR4 C19 F3 1
LR4 N18 F3 1
LR4 C5 F4 1
LR4 C6 F4 1
LR4 C7 F4 1
LR4 C8 F4 1
LR4 S9 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id LR4
_pdbe_chem_comp_rdkit_properties.exactmw 449.200
_pdbe_chem_comp_rdkit_properties.amw 449.584
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 32
_pdbe_chem_comp_rdkit_properties.NumAtoms 59
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.478
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 229.261
_pdbe_chem_comp_rdkit_properties.tpsa 108.100
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.069
_pdbe_chem_comp_rdkit_properties.CrippenMR 120.638
_pdbe_chem_comp_rdkit_properties.chi0v 16.263
_pdbe_chem_comp_rdkit_properties.chi1v 9.268
_pdbe_chem_comp_rdkit_properties.chi2v 5.169
_pdbe_chem_comp_rdkit_properties.chi3v 5.169
_pdbe_chem_comp_rdkit_properties.chi4v 3.766
_pdbe_chem_comp_rdkit_properties.chi0n 42.447
_pdbe_chem_comp_rdkit_properties.chi1n 21.846
_pdbe_chem_comp_rdkit_properties.chi2n 4.261
_pdbe_chem_comp_rdkit_properties.chi3n 4.261
_pdbe_chem_comp_rdkit_properties.chi4n 2.864
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.960
_pdbe_chem_comp_rdkit_properties.kappa1 6.334
_pdbe_chem_comp_rdkit_properties.kappa2 7.870
_pdbe_chem_comp_rdkit_properties.kappa3 3.345
_pdbe_chem_comp_rdkit_properties.Phi 1.558
#
_pdbe_chem_comp_external_mappings.comp_id LR4
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PDBe
_pdbe_chem_comp_external_mappings.resource_id LR4
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
LR4 C4 -3.923 -0.780 -0.085 ETKDGv3 1
LR4 C5 -5.256 1.317 0.349 ETKDGv3 2
LR4 C6 -4.570 0.544 -0.510 ETKDGv3 3
LR4 C7 -4.406 1.189 -1.852 ETKDGv3 4
LR4 C8 -5.035 2.364 -1.963 ETKDGv3 5
LR4 C10 -4.322 -1.903 -1.070 ETKDGv3 6
LR4 C17 0.980 -1.619 -0.135 ETKDGv3 7
LR4 C20 3.468 -2.894 -0.250 ETKDGv3 8
LR4 C21 2.233 -3.691 -0.374 ETKDGv3 9
LR4 C22 1.041 -3.087 -0.321 ETKDGv3 10
LR4 C26 4.776 0.485 -0.686 ETKDGv3 11
LR4 C1 -5.527 0.977 1.783 ETKDGv3 12
LR4 C11 -2.420 -0.608 -0.071 ETKDGv3 13
LR4 C14 -0.314 -0.923 -0.068 ETKDGv3 14
LR4 C19 3.382 -1.565 -0.096 ETKDGv3 15
LR4 C2 -4.496 -0.025 2.303 ETKDGv3 16
LR4 C23 -3.568 0.662 -2.901 ETKDGv3 17
LR4 C27 4.389 1.658 0.228 ETKDGv3 18
LR4 C29 4.929 0.321 2.199 ETKDGv3 19
LR4 C3 -4.392 -1.211 1.339 ETKDGv3 20
LR4 C30 5.309 -0.872 1.314 ETKDGv3 21
LR4 C31 4.823 2.730 2.349 ETKDGv3 22
LR4 C32 4.034 0.532 -2.031 ETKDGv3 23
LR4 N13 -0.423 0.356 0.094 ETKDGv3 24
LR4 N15 -1.577 -1.584 -0.172 ETKDGv3 25
LR4 N16 -5.021 3.205 -3.119 ETKDGv3 26
LR4 N18 2.087 -0.938 -0.031 ETKDGv3 27
LR4 N24 -2.894 0.243 -3.743 ETKDGv3 28
LR4 N25 4.574 -0.773 0.051 ETKDGv3 29
LR4 N28 5.170 1.593 1.483 ETKDGv3 30
LR4 O12 -1.771 0.603 0.102 ETKDGv3 31
LR4 S9 -5.837 2.799 -0.442 ETKDGv3 32
LR4 H1 -3.839 -1.782 -2.059 ETKDGv3 33
LR4 H2 -4.011 -2.896 -0.677 ETKDGv3 34
LR4 H3 -5.424 -1.920 -1.215 ETKDGv3 35
LR4 H4 4.432 -3.386 -0.289 ETKDGv3 36
LR4 H5 2.294 -4.764 -0.508 ETKDGv3 37
LR4 H6 0.135 -3.673 -0.412 ETKDGv3 38
LR4 H7 5.861 0.578 -0.918 ETKDGv3 39
LR4 H8 -6.547 0.545 1.863 ETKDGv3 40
LR4 H9 -5.486 1.901 2.398 ETKDGv3 41
LR4 H10 -4.808 -0.387 3.306 ETKDGv3 42
LR4 H11 -3.504 0.468 2.407 ETKDGv3 43
LR4 H12 3.296 1.624 0.443 ETKDGv3 44
LR4 H13 4.611 2.610 -0.302 ETKDGv3 45
LR4 H14 5.550 0.282 3.121 ETKDGv3 46
LR4 H15 3.858 0.231 2.495 ETKDGv3 47
LR4 H16 -5.395 -1.693 1.283 ETKDGv3 48
LR4 H17 -3.698 -1.970 1.765 ETKDGv3 49
LR4 H18 5.081 -1.824 1.842 ETKDGv3 50
LR4 H19 6.402 -0.849 1.109 ETKDGv3 51
LR4 H20 5.045 3.687 1.830 ETKDGv3 52
LR4 H21 3.746 2.710 2.630 ETKDGv3 53
LR4 H22 5.439 2.707 3.274 ETKDGv3 54
LR4 H23 2.938 0.626 -1.889 ETKDGv3 55
LR4 H24 4.379 1.409 -2.618 ETKDGv3 56
LR4 H25 4.251 -0.386 -2.617 ETKDGv3 57
LR4 H26 -4.527 2.923 -3.994 ETKDGv3 58
LR4 H27 -5.520 4.121 -3.098 ETKDGv3 59
#