data_LR9
#
_chem_comp.id LR9
_chem_comp.name 3-amino-N-ethyl-N-methylbenzamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H14 N2 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-03-04
_chem_comp.pdbx_modified_date 2022-03-11
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 178.231
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code LR9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5SMG
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LR9 N1 N1 N 0 1 N N N N N N 66.643 3.557 82.713 -1.805 0.538 0.064 N1 LR9 1
LR9 C4 C1 C 0 1 N N N N N N 66.220 2.430 82.106 -1.061 -0.548 0.354 C4 LR9 2
LR9 C5 C2 C 0 1 Y N N N N N 64.768 2.288 81.745 0.399 -0.528 0.123 C5 LR9 3
LR9 C6 C3 C 0 1 Y N N N N N 63.795 2.330 82.737 1.058 -1.686 -0.294 C6 LR9 4
LR9 C7 C4 C 0 1 Y N N N N N 62.463 2.141 82.417 2.421 -1.665 -0.508 C7 LR9 5
LR9 C8 C5 C 0 1 Y N N N N N 62.093 1.891 81.114 3.138 -0.500 -0.313 C8 LR9 6
LR9 C10 C6 C 0 1 Y N N N N N 64.401 2.017 80.433 1.122 0.650 0.314 C10 LR9 7
LR9 C1 C7 C 0 1 N N N N N N 66.476 5.988 82.214 -4.049 0.016 -0.757 C1 LR9 8
LR9 C2 C8 C 0 1 N N N N N N 65.823 4.773 82.816 -3.227 0.566 0.411 C2 LR9 9
LR9 C3 C9 C 0 1 N N N N N N 67.951 3.576 83.366 -1.188 1.693 -0.594 C3 LR9 10
LR9 O1 O1 O 0 1 N N N N N N 66.972 1.478 81.919 -1.592 -1.544 0.806 O1 LR9 11
LR9 C9 C10 C 0 1 Y N N N N N 63.053 1.834 80.103 2.492 0.659 0.101 C9 LR9 12
LR9 N2 N2 N 0 1 N N N N N N 62.678 1.568 78.796 3.220 1.836 0.292 N2 LR9 13
LR9 H1 H1 H 0 1 N N N N N N 64.081 2.511 83.763 0.501 -2.599 -0.447 H1 LR9 14
LR9 H2 H2 H 0 1 N N N N N N 61.711 2.190 83.191 2.929 -2.562 -0.830 H2 LR9 15
LR9 H3 H3 H 0 1 N N N N N N 61.051 1.738 80.873 4.205 -0.490 -0.483 H3 LR9 16
LR9 H4 H4 H 0 1 N N N N N N 65.158 1.947 79.666 0.617 1.550 0.632 H4 LR9 17
LR9 H5 H5 H 0 1 N N N N N N 65.810 6.856 82.326 -3.878 0.630 -1.642 H5 LR9 18
LR9 H6 H6 H 0 1 N N N N N N 67.427 6.187 82.730 -3.745 -1.010 -0.963 H6 LR9 19
LR9 H7 H7 H 0 1 N N N N N N 66.669 5.809 81.146 -5.107 0.037 -0.499 H7 LR9 20
LR9 H8 H8 H 0 1 N N N N N N 65.628 4.973 83.880 -3.398 -0.047 1.295 H8 LR9 21
LR9 H9 H9 H 0 1 N N N N N N 64.870 4.596 82.296 -3.531 1.593 0.617 H9 LR9 22
LR9 H10 H10 H 0 1 N N N N N N 68.128 4.569 83.804 -0.879 2.418 0.159 H10 LR9 23
LR9 H11 H11 H 0 1 N N N N N N 67.975 2.815 84.160 -0.317 1.366 -1.162 H11 LR9 24
LR9 H12 H12 H 0 1 N N N N N N 68.734 3.357 82.625 -1.909 2.155 -1.268 H12 LR9 25
LR9 H13 H13 H 0 1 N N N N N N 61.684 1.468 78.748 2.768 2.646 0.573 H13 LR9 26
LR9 H14 H14 H 0 1 N N N N N N 62.966 2.323 78.207 4.179 1.842 0.143 H14 LR9 27
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LR9 N2 C9 SING N N 1
LR9 C9 C10 DOUB Y N 2
LR9 C9 C8 SING Y N 3
LR9 C10 C5 SING Y N 4
LR9 C8 C7 DOUB Y N 5
LR9 C5 C4 SING N N 6
LR9 C5 C6 DOUB Y N 7
LR9 O1 C4 DOUB N N 8
LR9 C4 N1 SING N N 9
LR9 C1 C2 SING N N 10
LR9 C7 C6 SING Y N 11
LR9 N1 C2 SING N N 12
LR9 N1 C3 SING N N 13
LR9 C6 H1 SING N N 14
LR9 C7 H2 SING N N 15
LR9 C8 H3 SING N N 16
LR9 C10 H4 SING N N 17
LR9 C1 H5 SING N N 18
LR9 C1 H6 SING N N 19
LR9 C1 H7 SING N N 20
LR9 C2 H8 SING N N 21
LR9 C2 H9 SING N N 22
LR9 C3 H10 SING N N 23
LR9 C3 H11 SING N N 24
LR9 C3 H12 SING N N 25
LR9 N2 H13 SING N N 26
LR9 N2 H14 SING N N 27
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LR9 SMILES ACDLabs 12.01 O=C(c1cc(N)ccc1)N(C)CC
LR9 InChI InChI 1.03 InChI=1S/C10H14N2O/c1-3-12(2)10(13)8-5-4-6-9(11)7-8/h4-7H,3,11H2,1-2H3
LR9 InChIKey InChI 1.03 URNKFNQWYLXELN-UHFFFAOYSA-N
LR9 SMILES_CANONICAL CACTVS 3.385 CCN(C)C(=O)c1cccc(N)c1
LR9 SMILES CACTVS 3.385 CCN(C)C(=O)c1cccc(N)c1
LR9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CCN(C)C(=O)c1cccc(c1)N
LR9 SMILES "OpenEye OEToolkits" 2.0.7 CCN(C)C(=O)c1cccc(c1)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LR9 "SYSTEMATIC NAME" ACDLabs 12.01 3-amino-N-ethyl-N-methylbenzamide
LR9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 3-azanyl-~{N}-ethyl-~{N}-methyl-benzamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LR9 'Create component' 2022-03-04 RCSB
LR9 'Initial release' 2022-03-16 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
LR9 N1 N 7.702 1.965 1
LR9 C4 C 6.404 1.215 2
LR9 C5 C 6.404 -0.285 3
LR9 C6 C 7.702 -1.035 4
LR9 C7 C 7.702 -2.535 5
LR9 C8 C 6.404 -3.285 6
LR9 C10 C 5.104 -1.035 7
LR9 C1 C 9.002 4.215 8
LR9 C2 C 7.702 3.465 9
LR9 C3 C 9.002 1.215 10
LR9 O1 O 5.104 1.965 11
LR9 C9 C 5.104 -2.535 12
LR9 N2 N 3.805 -3.285 13
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
LR9 N2 C9 SINGLE NONE 1
LR9 C9 C10 SINGLE NONE 2
LR9 C9 C8 DOUBLE NONE 3
LR9 C10 C5 DOUBLE NONE 4
LR9 C8 C7 SINGLE NONE 5
LR9 C5 C4 SINGLE NONE 6
LR9 C5 C6 SINGLE NONE 7
LR9 O1 C4 DOUBLE NONE 8
LR9 C4 N1 SINGLE NONE 9
LR9 C1 C2 SINGLE NONE 10
LR9 C7 C6 DOUBLE NONE 11
LR9 N1 C2 SINGLE NONE 12
LR9 N1 C3 SINGLE NONE 13
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
LR9 MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
LR9 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
LR9 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
LR9 Z2092370954 F3 fragment CCN(C)C(=O)c1cccc(N)c1 InChI=1S/C10H14N2O/c1-3-12(2)10(13)8-5-4-6-9(11)7-8/h4-7H,3,11H2,1-2H3 URNKFNQWYLXELN-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
LR9 C5 S1 1
LR9 C6 S1 1
LR9 C7 S1 1
LR9 C8 S1 1
LR9 C10 S1 1
LR9 C9 S1 1
LR9 N1 F1 1
LR9 C4 F1 1
LR9 O1 F1 1
LR9 C5 F1 1
LR9 C5 F2 1
LR9 C10 F2 1
LR9 C9 F2 1
LR9 C8 F2 1
LR9 C7 F2 1
LR9 C6 F2 1
LR9 C1 F3 1
LR9 C2 F3 1
LR9 N1 F3 1
LR9 C3 F3 1
LR9 C4 F3 1
LR9 O1 F3 1
LR9 C5 F3 1
LR9 C6 F3 1
LR9 C7 F3 1
LR9 C8 F3 1
LR9 C9 F3 1
LR9 N2 F3 1
LR9 C10 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id LR9
_pdbe_chem_comp_rdkit_properties.exactmw 178.111
_pdbe_chem_comp_rdkit_properties.amw 178.235
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 13
_pdbe_chem_comp_rdkit_properties.NumAtoms 27
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.300
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 97.938
_pdbe_chem_comp_rdkit_properties.tpsa 46.330
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.925
_pdbe_chem_comp_rdkit_properties.CrippenMR 52.399
_pdbe_chem_comp_rdkit_properties.chi0v 6.303
_pdbe_chem_comp_rdkit_properties.chi1v 3.099
_pdbe_chem_comp_rdkit_properties.chi2v 1.141
_pdbe_chem_comp_rdkit_properties.chi3v 1.141
_pdbe_chem_comp_rdkit_properties.chi4v 0.603
_pdbe_chem_comp_rdkit_properties.chi0n 20.303
_pdbe_chem_comp_rdkit_properties.chi1n 9.993
_pdbe_chem_comp_rdkit_properties.chi2n 1.141
_pdbe_chem_comp_rdkit_properties.chi3n 1.141
_pdbe_chem_comp_rdkit_properties.chi4n 0.603
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.510
_pdbe_chem_comp_rdkit_properties.kappa1 1.946
_pdbe_chem_comp_rdkit_properties.kappa2 3.937
_pdbe_chem_comp_rdkit_properties.kappa3 2.212
_pdbe_chem_comp_rdkit_properties.Phi 0.589
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
LR9 UniChem PDBe LR9
LR9 UniChem ZINC ZINC000037078066
LR9 UniChem PubChem 43262925
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
LR9 N1 1.575 -0.180 1.125 ETKDGv3 1
LR9 C4 0.723 -1.178 0.529 ETKDGv3 2
LR9 C5 -0.659 -0.862 0.099 ETKDGv3 3
LR9 C6 -1.667 -1.949 0.004 ETKDGv3 4
LR9 C7 -2.914 -1.681 -0.403 ETKDGv3 5
LR9 C8 -3.296 -0.303 -0.766 ETKDGv3 6
LR9 C10 -1.011 0.390 -0.250 ETKDGv3 7
LR9 C1 3.148 0.389 -0.676 ETKDGv3 8
LR9 C2 2.993 -0.115 0.755 ETKDGv3 9
LR9 C3 1.078 0.685 2.198 ETKDGv3 10
LR9 O1 1.170 -2.344 0.351 ETKDGv3 11
LR9 C9 -2.393 0.688 -0.696 ETKDGv3 12
LR9 N2 -2.755 2.025 -1.052 ETKDGv3 13
LR9 H1 -1.403 -2.964 0.271 ETKDGv3 14
LR9 H2 -3.646 -2.476 -0.466 ETKDGv3 15
LR9 H3 -4.309 -0.103 -1.092 ETKDGv3 16
LR9 H4 -0.287 1.194 -0.228 ETKDGv3 17
LR9 H5 2.667 -0.315 -1.388 ETKDGv3 18
LR9 H6 4.226 0.471 -0.929 ETKDGv3 19
LR9 H7 2.677 1.390 -0.779 ETKDGv3 20
LR9 H8 3.459 -1.120 0.853 ETKDGv3 21
LR9 H9 3.542 0.575 1.433 ETKDGv3 22
LR9 H10 1.186 1.749 1.900 ETKDGv3 23
LR9 H11 1.663 0.504 3.125 ETKDGv3 24
LR9 H12 0.010 0.481 2.422 ETKDGv3 25
LR9 H13 -3.723 2.255 -1.370 ETKDGv3 26
LR9 H14 -2.053 2.795 -0.997 ETKDGv3 27
#