data_LTX
#
_chem_comp.id LTX
_chem_comp.name
;(5~{S},6~{R},7~{E},9~{E},11~{Z},14~{Z})-6-[(2~{R})-2-[[(4~{S})-4-azanyl-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]-3-(
2-hydroxy-2-oxoethylamino)-3-oxidanylidene-propyl]sulfanyl-5-oxidanyl-icosa-7,9,11,14-tetraenoic acid
;
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C30 H47 N3 O9 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "Leukotriene C4"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-01-04
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 625.774
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code LTX
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5H9N
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LTX O2 O1 O 0 1 N N N N N N 0.610 6.763 -7.958 -4.324 7.929 -2.862 O2 LTX 1
LTX C1 C1 C 0 1 N N N N N N 1.514 7.225 -8.693 -3.616 7.382 -1.861 C1 LTX 2
LTX O1 O2 O 0 1 N N N N N N 1.346 7.441 -9.918 -3.471 7.985 -0.824 O1 LTX 3
LTX C2 C2 C 0 1 N N N N N N 2.852 7.549 -8.071 -3.003 6.016 -2.030 C2 LTX 4
LTX C3 C3 C 0 1 N N N N N N 3.878 6.507 -8.504 -2.257 5.629 -0.752 C3 LTX 5
LTX C4 C4 C 0 1 N N N N N N 3.298 5.099 -8.385 -1.634 4.242 -0.924 C4 LTX 6
LTX C5 C5 C 0 1 N N S N N N 4.388 4.049 -8.552 -0.888 3.856 0.355 C5 LTX 7
LTX O3 O3 O 0 1 N N N N N N 4.830 3.997 -9.916 0.186 4.773 0.575 O3 LTX 8
LTX C6 C6 C 0 1 N N R N N N 3.914 2.665 -8.119 -0.328 2.440 0.211 C6 LTX 9
LTX C7 C7 C 0 1 N N N N N N 2.777 2.167 -9.002 0.422 2.066 1.463 C7 LTX 10
LTX C8 C8 C 0 1 N N N N N N 1.535 1.958 -8.533 1.717 1.757 1.398 C8 LTX 11
LTX C9 C9 C 0 1 N N N N N N 0.480 1.455 -9.427 2.446 1.393 2.615 C9 LTX 12
LTX C10 C10 C 0 1 N N N N N N -0.710 1.004 -9.005 3.756 1.081 2.549 C10 LTX 13
LTX C11 C11 C 0 1 N N N N N N -1.694 0.507 -9.972 4.485 0.717 3.766 C11 LTX 14
LTX C12 C12 C 0 1 N N N N N N -2.927 0.055 -9.709 5.756 0.323 3.689 C12 LTX 15
LTX C13 C13 C 0 1 N N N N N N -3.555 -0.032 -8.329 6.485 0.383 2.372 C13 LTX 16
LTX C14 C14 C 0 1 N N N N N N -4.082 1.312 -7.867 7.756 1.177 2.537 C14 LTX 17
LTX C15 C15 C 0 1 N N N N N N -5.208 1.858 -8.312 8.902 0.665 2.163 C15 LTX 18
LTX C16 C16 C 0 1 N N N N N N -6.093 1.174 -9.327 8.935 -0.647 1.422 C16 LTX 19
LTX C17 C17 C 0 1 N N N N N N -6.730 2.213 -10.245 9.736 -0.483 0.129 C17 LTX 20
LTX C18 C18 C 0 1 N N N N N N -7.781 1.548 -11.125 9.769 -1.815 -0.623 C18 LTX 21
LTX C19 C19 C 0 1 N N N N N N -8.234 2.455 -12.259 10.570 -1.651 -1.916 C19 LTX 22
LTX C20 C20 C 0 1 N N N N N N -9.305 1.780 -13.094 10.603 -2.984 -2.668 C20 LTX 23
LTX O32 O4 O 0 1 N N N N N N 3.899 -1.200 -13.326 1.526 -2.746 -3.940 O32 LTX 24
LTX C21 C21 C 0 1 N N N N N N 4.075 -0.833 -12.149 1.426 -3.822 -3.400 C21 LTX 25
LTX O31 O5 O 0 1 N N N N N N 3.740 0.291 -11.721 2.176 -4.855 -3.819 O31 LTX 26
LTX CA3 C22 C 0 1 N N N N N N 4.731 -1.799 -11.198 0.461 -4.006 -2.258 CA3 LTX 27
LTX N3 N1 N 0 1 N N N N N N 4.810 -1.220 -9.866 -0.231 -2.742 -1.995 N3 LTX 28
LTX C22 C23 C 0 1 N N N N N N 5.580 -1.707 -8.898 -1.148 -2.668 -1.010 C22 LTX 29
LTX O33 O6 O 0 1 N N N N N N 6.284 -2.685 -9.080 -1.400 -3.648 -0.341 O33 LTX 30
LTX CA2 C24 C 0 1 N N R N N N 5.583 -1.041 -7.550 -1.860 -1.368 -0.740 CA2 LTX 31
LTX CB2 C25 C 0 1 N N N N N N 4.628 0.150 -7.475 -0.836 -0.292 -0.373 CB2 LTX 32
LTX SG2 S1 S 0 1 N N N N N N 5.331 1.597 -8.193 -1.693 1.273 -0.048 SG2 LTX 33
LTX N2 N2 N 0 1 N N N N N N 6.931 -0.676 -7.169 -2.799 -1.546 0.370 N2 LTX 34
LTX CD1 C26 C 0 1 N N N N N N 7.427 -0.992 -5.981 -4.036 -2.026 0.136 CD1 LTX 35
LTX OE1 O7 O 0 1 N N N N N N 6.728 -1.263 -5.015 -4.373 -2.310 -0.994 OE1 LTX 36
LTX CG1 C27 C 0 1 N N N N N N 8.936 -0.979 -5.911 -5.002 -2.210 1.278 CG1 LTX 37
LTX CB1 C28 C 0 1 N N N N N N 9.426 -1.023 -4.472 -6.325 -2.763 0.743 CB1 LTX 38
LTX CA1 C29 C 0 1 N N S N N N 10.860 -0.504 -4.402 -7.305 -2.950 1.903 CA1 LTX 39
LTX N1 N3 N 0 1 N N N N N N 10.951 0.786 -5.116 -6.793 -3.981 2.816 N1 LTX 40
LTX C23 C30 C 0 1 N N N N N N 11.809 -1.480 -5.029 -8.646 -3.378 1.363 C23 LTX 41
LTX O11 O8 O 0 1 N N N N N N 12.544 -1.081 -5.960 -8.967 -4.542 1.396 O11 LTX 42
LTX O12 O9 O 0 1 N N N N N N 11.834 -2.650 -4.592 -9.483 -2.465 0.846 O12 LTX 43
LTX H1 H1 H 0 1 N N N N N N -0.175 6.618 -8.474 -4.697 8.807 -2.706 H1 LTX 44
LTX H2 H2 H 0 1 N N N N N N 3.179 8.546 -8.402 -3.789 5.286 -2.226 H2 LTX 45
LTX H3 H3 H 0 1 N N N N N N 2.759 7.539 -6.975 -2.306 6.031 -2.867 H3 LTX 46
LTX H4 H4 H 0 1 N N N N N N 4.767 6.587 -7.862 -1.470 6.359 -0.556 H4 LTX 47
LTX H5 H5 H 0 1 N N N N N N 4.163 6.693 -9.550 -2.954 5.614 0.086 H5 LTX 48
LTX H6 H6 H 0 1 N N N N N N 2.536 4.956 -9.166 -2.421 3.513 -1.119 H6 LTX 49
LTX H7 H7 H 0 1 N N N N N N 2.834 4.983 -7.394 -0.937 4.258 -1.761 H7 LTX 50
LTX H8 H8 H 0 1 N N N N N N 5.234 4.333 -7.910 -1.574 3.891 1.201 H8 LTX 51
LTX H9 H9 H 0 1 N N N N N N 5.509 3.338 -10.004 0.837 4.795 -0.140 H9 LTX 52
LTX H10 H10 H 0 1 N N N N N N 3.588 2.693 -7.069 0.349 2.402 -0.643 H10 LTX 53
LTX H11 H11 H 0 1 N N N N N N 2.977 1.974 -10.046 -0.090 2.048 2.414 H11 LTX 54
LTX H12 H12 H 0 1 N N N N N N 1.310 2.160 -7.496 2.229 1.774 0.447 H12 LTX 55
LTX H13 H13 H 0 1 N N N N N N 0.676 1.449 -10.489 1.934 1.376 3.566 H13 LTX 56
LTX H14 H14 H 0 1 N N N N N N -0.944 1.007 -7.951 4.268 1.098 1.598 H14 LTX 57
LTX H15 H15 H 0 1 N N N N N N -1.392 0.505 -11.009 3.993 0.769 4.726 H15 LTX 58
LTX H16 H16 H 0 1 N N N N N N -3.523 -0.275 -10.547 6.263 -0.040 4.571 H16 LTX 59
LTX H17 H17 H 0 1 N N N N N N -4.388 -0.750 -8.361 6.729 -0.628 2.045 H17 LTX 60
LTX H18 H18 H 0 1 N N N N N N -2.796 -0.382 -7.614 5.851 0.863 1.627 H18 LTX 61
LTX H19 H19 H 0 1 N N N N N N -3.508 1.858 -7.133 7.721 2.168 2.964 H19 LTX 62
LTX H20 H20 H 0 1 N N N N N N -5.501 2.826 -7.934 9.823 1.183 2.385 H20 LTX 63
LTX H21 H21 H 0 1 N N N N N N -6.884 0.616 -8.804 9.406 -1.406 2.047 H21 LTX 64
LTX H22 H22 H 0 1 N N N N N N -5.489 0.478 -9.928 7.917 -0.955 1.182 H22 LTX 65
LTX H23 H23 H 0 1 N N N N N N -5.954 2.664 -10.881 9.265 0.275 -0.496 H23 LTX 66
LTX H24 H24 H 0 1 N N N N N N -7.206 2.996 -9.636 10.753 -0.176 0.369 H24 LTX 67
LTX H25 H25 H 0 1 N N N N N N -8.653 1.293 -10.505 10.240 -2.574 0.002 H25 LTX 68
LTX H26 H26 H 0 1 N N N N N N -7.355 0.629 -11.554 8.751 -2.123 -0.863 H26 LTX 69
LTX H27 H27 H 0 1 N N N N N N -7.371 2.689 -12.900 10.099 -0.893 -2.541 H27 LTX 70
LTX H28 H28 H 0 1 N N N N N N -8.640 3.386 -11.836 11.588 -1.344 -1.676 H28 LTX 71
LTX H29 H29 H 0 1 N N N N N N -9.616 2.453 -13.906 9.585 -3.291 -2.908 H29 LTX 72
LTX H30 H30 H 0 1 N N N N N N -8.904 0.850 -13.523 11.174 -2.867 -3.589 H30 LTX 73
LTX H31 H31 H 0 1 N N N N N N -10.172 1.547 -12.459 11.074 -3.742 -2.042 H31 LTX 74
LTX H32 H32 H 0 1 N N N N N N 3.344 0.793 -12.424 2.781 -4.688 -4.554 H32 LTX 75
LTX H33 H33 H 0 1 N N N N N N 4.140 -2.726 -11.157 -0.269 -4.773 -2.519 H33 LTX 76
LTX H34 H34 H 0 1 N N N N N N 5.746 -2.027 -11.555 1.007 -4.314 -1.366 H34 LTX 77
LTX H35 H35 H 0 1 N N N N N N 4.255 -0.412 -9.668 -0.030 -1.959 -2.530 H35 LTX 78
LTX H36 H36 H 0 1 N N N N N N 5.220 -1.783 -6.824 -2.406 -1.060 -1.632 H36 LTX 79
LTX H37 H37 H 0 1 N N N N N N 4.394 0.353 -6.420 -0.289 -0.599 0.518 H37 LTX 80
LTX H38 H38 H 0 1 N N N N N N 3.702 -0.101 -8.014 -0.137 -0.159 -1.199 H38 LTX 81
LTX H39 H39 H 0 1 N N N N N N 7.502 -0.173 -7.818 -2.530 -1.320 1.274 H39 LTX 82
LTX H40 H40 H 0 1 N N N N N N 9.327 -1.855 -6.449 -4.582 -2.909 2.000 H40 LTX 83
LTX H41 H41 H 0 1 N N N N N N 9.308 -0.060 -6.388 -5.180 -1.250 1.762 H41 LTX 84
LTX H42 H42 H 0 1 N N N N N N 8.778 -0.393 -3.845 -6.746 -2.064 0.021 H42 LTX 85
LTX H43 H43 H 0 1 N N N N N N 9.394 -2.060 -4.106 -6.148 -3.724 0.259 H43 LTX 86
LTX H44 H44 H 0 1 N N N N N N 11.134 -0.360 -3.347 -7.414 -2.009 2.442 H44 LTX 87
LTX H45 H45 H 0 1 N N N N N N 10.320 1.442 -4.702 -6.684 -4.864 2.339 H45 LTX 88
LTX H46 H46 H 0 1 N N N N N N 11.885 1.137 -5.052 -5.926 -3.689 3.241 H46 LTX 89
LTX H48 H48 H 0 1 N N N N N N 12.480 -3.154 -5.072 -10.332 -2.787 0.512 H48 LTX 90
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LTX O32 C21 DOUB N N 1
LTX C20 C19 SING N N 2
LTX C19 C18 SING N N 3
LTX C21 O31 SING N N 4
LTX C21 CA3 SING N N 5
LTX CA3 N3 SING N N 6
LTX C18 C17 SING N N 7
LTX C17 C16 SING N N 8
LTX C11 C12 DOUB N Z 9
LTX C11 C10 SING N N 10
LTX O1 C1 DOUB N N 11
LTX O3 C5 SING N N 12
LTX N3 C22 SING N N 13
LTX C12 C13 SING N N 14
LTX C9 C10 DOUB N E 15
LTX C9 C8 SING N N 16
LTX C16 C15 SING N N 17
LTX O33 C22 DOUB N N 18
LTX C7 C8 DOUB N E 19
LTX C7 C6 SING N N 20
LTX C22 CA2 SING N N 21
LTX C1 C2 SING N N 22
LTX C1 O2 SING N N 23
LTX C5 C4 SING N N 24
LTX C5 C6 SING N N 25
LTX C3 C4 SING N N 26
LTX C3 C2 SING N N 27
LTX C13 C14 SING N N 28
LTX C15 C14 DOUB N Z 29
LTX SG2 C6 SING N N 30
LTX SG2 CB2 SING N N 31
LTX CA2 CB2 SING N N 32
LTX CA2 N2 SING N N 33
LTX N2 CD1 SING N N 34
LTX CD1 CG1 SING N N 35
LTX CD1 OE1 DOUB N N 36
LTX O11 C23 DOUB N N 37
LTX CG1 CB1 SING N N 38
LTX N1 CA1 SING N N 39
LTX C23 O12 SING N N 40
LTX C23 CA1 SING N N 41
LTX CB1 CA1 SING N N 42
LTX O2 H1 SING N N 43
LTX C2 H2 SING N N 44
LTX C2 H3 SING N N 45
LTX C3 H4 SING N N 46
LTX C3 H5 SING N N 47
LTX C4 H6 SING N N 48
LTX C4 H7 SING N N 49
LTX C5 H8 SING N N 50
LTX O3 H9 SING N N 51
LTX C6 H10 SING N N 52
LTX C7 H11 SING N N 53
LTX C8 H12 SING N N 54
LTX C9 H13 SING N N 55
LTX C10 H14 SING N N 56
LTX C11 H15 SING N N 57
LTX C12 H16 SING N N 58
LTX C13 H17 SING N N 59
LTX C13 H18 SING N N 60
LTX C14 H19 SING N N 61
LTX C15 H20 SING N N 62
LTX C16 H21 SING N N 63
LTX C16 H22 SING N N 64
LTX C17 H23 SING N N 65
LTX C17 H24 SING N N 66
LTX C18 H25 SING N N 67
LTX C18 H26 SING N N 68
LTX C19 H27 SING N N 69
LTX C19 H28 SING N N 70
LTX C20 H29 SING N N 71
LTX C20 H30 SING N N 72
LTX C20 H31 SING N N 73
LTX O31 H32 SING N N 74
LTX CA3 H33 SING N N 75
LTX CA3 H34 SING N N 76
LTX N3 H35 SING N N 77
LTX CA2 H36 SING N N 78
LTX CB2 H37 SING N N 79
LTX CB2 H38 SING N N 80
LTX N2 H39 SING N N 81
LTX CG1 H40 SING N N 82
LTX CG1 H41 SING N N 83
LTX CB1 H42 SING N N 84
LTX CB1 H43 SING N N 85
LTX CA1 H44 SING N N 86
LTX N1 H45 SING N N 87
LTX N1 H46 SING N N 88
LTX O12 H48 SING N N 89
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LTX InChI InChI 1.03 InChI=1S/C30H47N3O9S/c1-2-3-4-5-6-7-8-9-10-11-12-13-16-25(24(34)15-14-17-27(36)37)43-21-23(29(40)32-20-28(38)39)33-26(35)19-18-22(31)30(41)42/h6-7,9-13,16,22-25,34H,2-5,8,14-15,17-21,31H2,1H3,(H,32,40)(H,33,35)(H,36,37)(H,38,39)(H,41,42)/b7-6-,10-9-,12-11+,16-13+/t22-,23-,24-,25+/m0/s1
LTX InChIKey InChI 1.03 GWNVDXQDILPJIG-NXOLIXFESA-N
LTX SMILES_CANONICAL CACTVS 3.385 CCCCC\C=C/C\C=C/C=C/C=C/[C@@H](SC[C@H](NC(=O)CC[C@H](N)C(O)=O)C(=O)NCC(O)=O)[C@@H](O)CCCC(O)=O
LTX SMILES CACTVS 3.385 CCCCCC=CCC=CC=CC=C[CH](SC[CH](NC(=O)CC[CH](N)C(O)=O)C(=O)NCC(O)=O)[CH](O)CCCC(O)=O
LTX SMILES_CANONICAL "OpenEye OEToolkits" 2.0.4 CCCCC/C=C\C/C=C\C=C\C=C\[C@H]([C@H](CCCC(=O)O)O)SC[C@@H](C(=O)NCC(=O)O)NC(=O)CC[C@@H](C(=O)O)N
LTX SMILES "OpenEye OEToolkits" 2.0.4 CCCCCC=CCC=CC=CC=CC(C(CCCC(=O)O)O)SCC(C(=O)NCC(=O)O)NC(=O)CCC(C(=O)O)N
#
_pdbx_chem_comp_identifier.comp_id LTX
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.4
_pdbx_chem_comp_identifier.identifier
"(5~{S},6~{R},7~{E},9~{E},11~{Z},14~{Z})-6-[(2~{R})-2-[[(4~{S})-4-azanyl-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]-3-(2-hydroxy-2-oxoethylamino)-3-oxidanylidene-propyl]sulfanyl-5-oxidanyl-icosa-7,9,11,14-tetraenoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LTX 'Create component' 2016-01-04 RCSB
LTX 'Initial release' 2016-05-11 RCSB
LTX 'Other modification' 2017-05-18 RCSB
LTX 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id LTX
_pdbx_chem_comp_synonyms.name "Leukotriene C4"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id LTX
_pdbe_chem_comp_drugbank_details.drugbank_id DB08855
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'Leukotriene C4'
_pdbe_chem_comp_drugbank_details.description
'The conjugation product of LEUKOTRIENE A4 and glutathione. It is the major arachidonic acid metabolite in macrophages and human mast cells as well as in antigen-sensitized lung tissue. It stimulates mucus secretion in the lung, and produces contractions of nonvascular and some vascular smooth muscle. (From Dictionary of Prostaglandins and Related Compounds, 1990)'
_pdbe_chem_comp_drugbank_details.cas_number 72025-60-6
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
LTX 'Leukotriene C4' wwPDB ?
LTX (R-(R*,S*-(E,E,Z,Z)))-N-(S-(1-(4-Carboxy-1-hydroxybutyl)-2,4,6,9-pentadecatetraenyl)-N-L-gamma-glutamyl-L-cysteinyl)glycine DrugBank ?
LTX 'L-γ-glutamyl-S-[(1R,2E,4E,6Z,9Z)-1-[(1S)-4-carboxy-1-hydroxybutyl]pentadeca-2,4,6,9-tetraen-1-yl]-L-cysteinylglycine' DrugBank ?
LTX 'LTC (sub 4)' DrugBank ?
LTX LTC4 DrugBank ?
#
_pdbe_chem_comp_drugbank_classification.comp_id LTX
_pdbe_chem_comp_drugbank_classification.drugbank_id DB08855
_pdbe_chem_comp_drugbank_classification.parent Oligopeptides
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as oligopeptides. These are organic compounds containing a sequence of between three and ten alpha-amino acids joined by peptide bonds.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
LTX DB08855 'Cysteinyl leukotriene receptor 1' Humans Q9Y271 unknown 1
LTX DB08855 'Cysteinyl leukotriene receptor 2' Humans Q9NS75 unknown 2
LTX DB08855 'Multidrug resistance-associated protein 1' Humans P33527 unknown 3
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
LTX O2 O 16.796 -0.983 1
LTX C1 C 15.497 -1.732 2
LTX O1 O 15.497 -3.232 3
LTX C2 C 14.198 -0.983 4
LTX C3 C 14.198 0.517 5
LTX C4 C 12.899 1.268 6
LTX C5 C 12.899 2.768 7
LTX O3 O 14.198 3.518 8
LTX C6 C 11.600 3.518 9
LTX C7 C 10.301 2.768 10
LTX C8 C 10.301 1.268 11
LTX C9 C 9.002 0.517 12
LTX C10 C 9.002 -0.983 13
LTX C11 C 7.702 -1.732 14
LTX C12 C 7.702 -3.232 15
LTX C13 C 9.002 -3.982 16
LTX C14 C 9.002 -5.482 17
LTX C15 C 10.301 -6.232 18
LTX C16 C 11.600 -5.482 19
LTX C17 C 12.899 -6.232 20
LTX C18 C 12.899 -7.732 21
LTX C19 C 14.198 -8.482 22
LTX C20 C 14.198 -9.982 23
LTX O32 O 19.394 8.018 24
LTX C21 C 18.095 7.268 25
LTX O31 O 18.095 5.768 26
LTX CA3 C 16.796 8.018 27
LTX N3 N 15.497 7.268 28
LTX C22 C 14.198 8.018 29
LTX O33 O 14.198 9.518 30
LTX CA2 C 12.899 7.268 31
LTX CB2 C 12.899 5.768 32
LTX SG2 S 11.600 5.018 33
LTX N2 N 11.600 8.018 34
LTX CD1 C 10.301 7.268 35
LTX OE1 O 10.301 5.768 36
LTX CG1 C 9.002 8.018 37
LTX CB1 C 7.702 7.268 38
LTX CA1 C 6.404 8.018 39
LTX N1 N 6.404 9.518 40
LTX C23 C 5.104 7.268 41
LTX O11 O 3.805 8.018 42
LTX O12 O 5.104 5.768 43
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
LTX O32 C21 DOUBLE NONE 1
LTX C20 C19 SINGLE NONE 2
LTX C19 C18 SINGLE NONE 3
LTX C21 O31 SINGLE NONE 4
LTX C21 CA3 SINGLE NONE 5
LTX CA3 N3 SINGLE NONE 6
LTX C18 C17 SINGLE NONE 7
LTX C17 C16 SINGLE NONE 8
LTX C11 C12 DOUBLE NONE 9
LTX C11 C10 SINGLE ENDDOWNRIGHT 10
LTX O1 C1 DOUBLE NONE 11
LTX C5 O3 SINGLE BEGINWEDGE 12
LTX N3 C22 SINGLE NONE 13
LTX C12 C13 SINGLE ENDDOWNRIGHT 14
LTX C9 C10 DOUBLE NONE 15
LTX C9 C8 SINGLE ENDDOWNRIGHT 16
LTX C16 C15 SINGLE ENDUPRIGHT 17
LTX O33 C22 DOUBLE NONE 18
LTX C7 C8 DOUBLE NONE 19
LTX C7 C6 SINGLE ENDDOWNRIGHT 20
LTX C22 CA2 SINGLE NONE 21
LTX C1 C2 SINGLE NONE 22
LTX C1 O2 SINGLE NONE 23
LTX C5 C4 SINGLE NONE 24
LTX C5 C6 SINGLE NONE 25
LTX C3 C4 SINGLE NONE 26
LTX C3 C2 SINGLE NONE 27
LTX C13 C14 SINGLE ENDUPRIGHT 28
LTX C15 C14 DOUBLE NONE 29
LTX C6 SG2 SINGLE BEGINWEDGE 30
LTX SG2 CB2 SINGLE NONE 31
LTX CA2 CB2 SINGLE BEGINDASH 32
LTX CA2 N2 SINGLE NONE 33
LTX N2 CD1 SINGLE NONE 34
LTX CD1 CG1 SINGLE NONE 35
LTX CD1 OE1 DOUBLE NONE 36
LTX O11 C23 DOUBLE NONE 37
LTX CG1 CB1 SINGLE NONE 38
LTX CA1 N1 SINGLE BEGINWEDGE 39
LTX C23 O12 SINGLE NONE 40
LTX C23 CA1 SINGLE NONE 41
LTX CB1 CA1 SINGLE NONE 42
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
LTX amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
LTX peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
LTX N3 F1 1
LTX C22 F1 1
LTX O33 F1 1
LTX CA2 F1 1
LTX N2 F1 2
LTX CD1 F1 2
LTX OE1 F1 2
LTX CG1 F1 2
LTX O32 F2 1
LTX C21 F2 1
LTX CA3 F2 1
LTX N3 F2 1
LTX O33 F2 2
LTX C22 F2 2
LTX CA2 F2 2
LTX N2 F2 2
LTX O11 F2 3
LTX C23 F2 3
LTX CA1 F2 3
LTX N1 F2 3
#
_pdbe_chem_comp_rdkit_properties.comp_id LTX
_pdbe_chem_comp_rdkit_properties.exactmw 625.303
_pdbe_chem_comp_rdkit_properties.amw 625.785
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 12
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 8
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 28
_pdbe_chem_comp_rdkit_properties.NumHBD 7
_pdbe_chem_comp_rdkit_properties.NumHBA 11
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 43
_pdbe_chem_comp_rdkit_properties.NumAtoms 90
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 13
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.567
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 323.724
_pdbe_chem_comp_rdkit_properties.tpsa 216.350
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.777
_pdbe_chem_comp_rdkit_properties.CrippenMR 166.480
_pdbe_chem_comp_rdkit_properties.chi0v 21.241
_pdbe_chem_comp_rdkit_properties.chi1v 10.680
_pdbe_chem_comp_rdkit_properties.chi2v 3.593
_pdbe_chem_comp_rdkit_properties.chi3v 3.593
_pdbe_chem_comp_rdkit_properties.chi4v 1.959
_pdbe_chem_comp_rdkit_properties.chi0n 67.424
_pdbe_chem_comp_rdkit_properties.chi1n 32.785
_pdbe_chem_comp_rdkit_properties.chi2n 2.806
_pdbe_chem_comp_rdkit_properties.chi3n 2.806
_pdbe_chem_comp_rdkit_properties.chi4n 1.381
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.420
_pdbe_chem_comp_rdkit_properties.kappa1 8.044
_pdbe_chem_comp_rdkit_properties.kappa2 25.112
_pdbe_chem_comp_rdkit_properties.kappa3 22.803
_pdbe_chem_comp_rdkit_properties.Phi 4.697
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
LTX UniChem ChEMBL CHEMBL451509
LTX UniChem DrugBank DB08855
LTX UniChem PDBe LTX
LTX UniChem 'Guide to Pharmacology' 3354
LTX UniChem 'KEGG LIGAND' C02166
LTX UniChem ChEBI 16978
LTX UniChem ZINC ZINC000004095814
LTX UniChem fdasrs 2CU6TT9V48
LTX UniChem SureChEMBL SCHEMBL12795155
LTX UniChem HMDB HMDB0001198
LTX UniChem NMRShiftDB 60020936
LTX UniChem 'EPA CompTox Dashboard' DTXSID00903946
LTX UniChem LipidMaps LMFA03020003
LTX UniChem MetaboLights MTBLC16978
LTX UniChem BRENDA 2274
LTX UniChem BRENDA 229608
LTX UniChem BRENDA 229609
LTX UniChem BRENDA 243280
LTX UniChem BRENDA 244690
LTX UniChem BRENDA 45635
LTX UniChem BRENDA 71916
LTX UniChem MedChemExpress HY-113446
LTX UniChem 'Probes And Drugs' PD021020
LTX UniChem Nikkaji J263.860F
LTX UniChem PubChem 5280493
LTX UniChem ACTor 10-34-4
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
LTX O2 -3.385 -7.642 -1.973 ETKDGv3 1
LTX C1 -3.675 -7.911 -0.640 ETKDGv3 2
LTX O1 -4.821 -8.322 -0.315 ETKDGv3 3
LTX C2 -2.640 -7.667 0.413 ETKDGv3 4
LTX C3 -2.788 -6.257 0.994 ETKDGv3 5
LTX C4 -1.725 -5.988 2.070 ETKDGv3 6
LTX C5 -1.949 -4.692 2.887 ETKDGv3 7
LTX O3 -3.168 -4.782 3.582 ETKDGv3 8
LTX C6 -1.873 -3.357 2.094 ETKDGv3 9
LTX C7 -0.672 -3.317 1.186 ETKDGv3 10
LTX C8 0.407 -2.589 1.482 ETKDGv3 11
LTX C9 1.517 -2.454 0.526 ETKDGv3 12
LTX C10 2.424 -1.487 0.677 ETKDGv3 13
LTX C11 3.492 -1.281 -0.321 ETKDGv3 14
LTX C12 4.239 -0.169 -0.391 ETKDGv3 15
LTX C13 4.060 1.033 0.499 ETKDGv3 16
LTX C14 2.758 1.732 0.198 ETKDGv3 17
LTX C15 2.574 2.600 -0.814 ETKDGv3 18
LTX C16 3.669 3.111 -1.714 ETKDGv3 19
LTX C17 4.389 4.321 -1.099 ETKDGv3 20
LTX C18 3.471 5.553 -1.005 ETKDGv3 21
LTX C19 4.153 6.745 -0.317 ETKDGv3 22
LTX C20 5.244 7.381 -1.179 ETKDGv3 23
LTX O32 -3.249 -4.434 -2.486 ETKDGv3 24
LTX C21 -2.053 -4.077 -2.657 ETKDGv3 25
LTX O31 -1.015 -4.953 -2.354 ETKDGv3 26
LTX CA3 -1.743 -2.695 -3.130 ETKDGv3 27
LTX N3 -1.522 -1.822 -1.982 ETKDGv3 28
LTX C22 -2.602 -1.194 -1.276 ETKDGv3 29
LTX O33 -3.745 -1.115 -1.804 ETKDGv3 30
LTX CA2 -2.372 -0.618 0.097 ETKDGv3 31
LTX CB2 -3.364 -1.198 1.124 ETKDGv3 32
LTX SG2 -3.405 -3.038 1.127 ETKDGv3 33
LTX N2 -2.474 0.843 0.044 ETKDGv3 34
LTX CD1 -1.458 1.645 -0.577 ETKDGv3 35
LTX OE1 -0.472 1.097 -1.141 ETKDGv3 36
LTX CG1 -1.528 3.140 -0.517 ETKDGv3 37
LTX CB1 -0.929 3.655 0.799 ETKDGv3 38
LTX CA1 -0.748 5.186 0.797 ETKDGv3 39
LTX N1 -0.018 5.604 1.995 ETKDGv3 40
LTX C23 -2.082 5.879 0.749 ETKDGv3 41
LTX O11 -2.852 5.848 1.746 ETKDGv3 42
LTX O12 -2.477 6.537 -0.412 ETKDGv3 43
LTX H1 -4.082 -7.784 -2.695 ETKDGv3 44
LTX H2 -2.754 -8.423 1.220 ETKDGv3 45
LTX H3 -1.630 -7.785 -0.035 ETKDGv3 46
LTX H4 -2.669 -5.526 0.168 ETKDGv3 47
LTX H5 -3.804 -6.148 1.432 ETKDGv3 48
LTX H6 -1.725 -6.837 2.789 ETKDGv3 49
LTX H7 -0.718 -5.974 1.600 ETKDGv3 50
LTX H8 -1.121 -4.667 3.634 ETKDGv3 51
LTX H9 -3.134 -4.111 4.313 ETKDGv3 52
LTX H10 -1.791 -2.550 2.855 ETKDGv3 53
LTX H11 -0.705 -3.875 0.257 ETKDGv3 54
LTX H12 0.432 -2.017 2.403 ETKDGv3 55
LTX H13 1.554 -3.102 -0.343 ETKDGv3 56
LTX H14 2.348 -0.826 1.530 ETKDGv3 57
LTX H15 3.676 -2.062 -1.050 ETKDGv3 58
LTX H16 5.008 -0.119 -1.152 ETKDGv3 59
LTX H17 4.916 1.726 0.364 ETKDGv3 60
LTX H18 4.081 0.718 1.563 ETKDGv3 61
LTX H19 1.897 1.474 0.807 ETKDGv3 62
LTX H20 1.578 3.001 -0.972 ETKDGv3 63
LTX H21 4.402 2.307 -1.934 ETKDGv3 64
LTX H22 3.223 3.408 -2.688 ETKDGv3 65
LTX H23 4.771 4.059 -0.089 ETKDGv3 66
LTX H24 5.262 4.559 -1.742 ETKDGv3 67
LTX H25 2.570 5.294 -0.409 ETKDGv3 68
LTX H26 3.128 5.850 -2.020 ETKDGv3 69
LTX H27 4.585 6.429 0.658 ETKDGv3 70
LTX H28 3.382 7.518 -0.108 ETKDGv3 71
LTX H29 4.841 7.654 -2.177 ETKDGv3 72
LTX H30 6.102 6.689 -1.302 ETKDGv3 73
LTX H31 5.614 8.304 -0.683 ETKDGv3 74
LTX H32 -1.203 -5.885 -2.008 ETKDGv3 75
LTX H33 -0.822 -2.722 -3.750 ETKDGv3 76
LTX H34 -2.566 -2.305 -3.767 ETKDGv3 77
LTX H35 -0.558 -1.776 -1.581 ETKDGv3 78
LTX H36 -1.351 -0.868 0.441 ETKDGv3 79
LTX H37 -3.124 -0.818 2.140 ETKDGv3 80
LTX H38 -4.389 -0.847 0.880 ETKDGv3 81
LTX H39 -3.276 1.327 0.509 ETKDGv3 82
LTX H40 -0.970 3.564 -1.381 ETKDGv3 83
LTX H41 -2.588 3.463 -0.605 ETKDGv3 84
LTX H42 -1.577 3.349 1.650 ETKDGv3 85
LTX H43 0.065 3.183 0.952 ETKDGv3 86
LTX H44 -0.157 5.479 -0.101 ETKDGv3 87
LTX H45 0.939 5.183 1.961 ETKDGv3 88
LTX H46 0.126 6.640 1.947 ETKDGv3 89
LTX H48 -3.377 7.000 -0.466 ETKDGv3 90
#