data_LU1
#
_chem_comp.id LU1
_chem_comp.name
"4'-fluoro-4,5-dihydroxy-N-{(2E)-3-[(2S,4R,5R)-4-hydroxy-5-(6-methyl-9H-purin-9-yl)tetrahydrofuran-2-yl]prop-2-en-1-yl}biphenyl-3-carboxamide"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H24 F N5 O5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-04-21
_chem_comp.pdbx_modified_date 2012-01-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 505.498
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code LU1
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3R6T
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LU1 O14 O14 O 0 1 N N N N N N -2.941 13.625 24.643 -3.849 -3.701 -0.592 O14 LU1 1
LU1 C6 C6 C 0 1 N N N N N N -1.893 13.069 24.899 -3.310 -2.621 -0.444 C6 LU1 2
LU1 C2 C2 C 0 1 Y N N N N N -0.561 13.728 24.739 -4.129 -1.405 -0.272 C2 LU1 3
LU1 C3 C3 C 0 1 Y N N N N N 0.650 13.197 25.232 -5.527 -1.493 -0.278 C3 LU1 4
LU1 O20 O20 O 0 1 N N N N N N 0.737 12.085 25.971 -6.132 -2.697 -0.442 O20 LU1 5
LU1 C9 C9 C 0 1 Y N N N N N 1.839 13.907 24.968 -6.295 -0.343 -0.115 C9 LU1 6
LU1 O21 O21 O 0 1 N N N N N N 2.982 13.387 25.453 -7.653 -0.428 -0.120 O21 LU1 7
LU1 C10 C10 C 0 1 Y N N N N N 1.801 15.091 24.249 -5.681 0.884 0.053 C10 LU1 8
LU1 C4 C4 C 0 1 Y N N N N N -0.574 14.917 24.017 -3.513 -0.165 -0.096 C4 LU1 9
LU1 C7 C7 C 0 1 Y N N N N N 0.584 15.640 23.758 -4.289 0.977 0.060 C7 LU1 10
LU1 C13 C13 C 0 1 Y N N N N N 0.572 16.908 22.984 -3.635 2.297 0.240 C13 LU1 11
LU1 C17 C17 C 0 1 Y N N N N N 1.413 17.958 23.366 -4.410 3.444 0.403 C17 LU1 12
LU1 C24 C24 C 0 1 Y N N N N N 1.402 19.164 22.640 -3.799 4.669 0.571 C24 LU1 13
LU1 C18 C18 C 0 1 Y N N N N N -0.280 17.091 21.893 -2.245 2.393 0.254 C18 LU1 14
LU1 C25 C25 C 0 1 Y N N N N N -0.290 18.242 21.169 -1.642 3.622 0.422 C25 LU1 15
LU1 C23 C23 C 0 1 Y N N N N N 0.557 19.269 21.552 -2.417 4.761 0.578 C23 LU1 16
LU1 F26 F26 F 0 1 N N N N N N 0.559 20.400 20.858 -1.822 5.962 0.743 F26 LU1 17
LU1 N16 N16 N 0 1 N N N N N N -1.885 11.816 25.322 -1.965 -2.534 -0.432 N16 LU1 18
LU1 C27 C27 C 0 1 N N N N N N -3.138 11.053 25.391 -1.152 -3.742 -0.598 C27 LU1 19
LU1 C19 C19 C 0 1 N N N N N N -2.785 9.590 25.323 0.308 -3.375 -0.547 C19 LU1 20
LU1 C15 C15 C 0 1 N N N N N N -3.380 8.695 24.585 1.103 -3.966 0.310 C15 LU1 21
LU1 C12 C12 C 0 1 N N S N N N -3.038 7.243 24.569 2.564 -3.599 0.360 C12 LU1 22
LU1 C11 C11 C 0 1 N N N N N N -3.660 6.547 23.366 2.945 -3.068 1.765 C11 LU1 23
LU1 C8 C8 C 0 1 N N R N N N -5.069 6.278 23.918 4.184 -2.192 1.456 C8 LU1 24
LU1 O22 O22 O 0 1 N N N N N N -5.812 5.330 23.179 5.387 -2.919 1.716 O22 LU1 25
LU1 C1 C1 C 0 1 N N R N N N -4.701 5.810 25.337 4.058 -1.877 -0.047 C1 LU1 26
LU1 O5 O5 O 0 1 N N N N N N -3.570 6.565 25.740 2.837 -2.479 -0.509 O5 LU1 27
LU1 N28 N28 N 0 1 Y N N N N N -5.775 6.021 26.321 4.006 -0.427 -0.249 N28 LU1 28
LU1 C29 C29 C 0 1 Y N N N N N -6.234 5.134 27.227 5.083 0.416 -0.358 C29 LU1 29
LU1 C30 C30 C 0 1 Y N N N N N -7.170 5.858 28.011 4.548 1.707 -0.542 C30 LU1 30
LU1 N31 N31 N 0 1 Y N N N N N -7.201 7.157 27.610 3.198 1.581 -0.535 N31 LU1 31
LU1 C32 C32 C 0 1 Y N N N N N -6.350 7.245 26.621 2.880 0.330 -0.370 C32 LU1 32
LU1 N33 N33 N 0 1 Y N N N N N -5.968 3.822 27.365 6.400 0.265 -0.326 N33 LU1 33
LU1 C36 C36 C 0 1 Y N N N N N -6.649 3.250 28.357 7.195 1.306 -0.464 C36 LU1 34
LU1 N35 N35 N 0 1 Y N N N N N -7.595 3.835 29.121 6.733 2.531 -0.638 N35 LU1 35
LU1 C34 C34 C 0 1 Y N N N N N -7.884 5.144 28.936 5.435 2.776 -0.683 C34 LU1 36
LU1 C37 C37 C 0 1 N N N N N N -8.964 5.763 29.738 4.923 4.179 -0.882 C37 LU1 37
LU1 HO20 HO20 H 0 0 N N N N N N 1.647 11.919 26.189 -6.303 -3.167 0.385 HO20 LU1 38
LU1 HO21 HO21 H 0 0 N N N N N N 3.711 13.947 25.215 -8.041 -0.574 0.753 HO21 LU1 39
LU1 H10 H10 H 0 1 N N N N N N 2.726 15.614 24.055 -6.281 1.773 0.179 H10 LU1 40
LU1 H4 H4 H 0 1 N N N N N N -1.516 15.291 23.645 -2.435 -0.093 -0.086 H4 LU1 41
LU1 H17 H17 H 0 1 N N N N N N 2.069 17.844 24.216 -5.488 3.373 0.397 H17 LU1 42
LU1 H24 H24 H 0 1 N N N N N N 2.039 19.988 22.927 -4.399 5.558 0.697 H24 LU1 43
LU1 H18 H18 H 0 1 N N N N N N -0.953 16.293 21.615 -1.641 1.506 0.132 H18 LU1 44
LU1 H25 H25 H 0 1 N N N N N N -0.943 18.353 20.316 -0.565 3.697 0.433 H25 LU1 45
LU1 HN16 HN16 H 0 0 N N N N N N -1.024 11.387 25.595 -1.536 -1.673 -0.315 HN16 LU1 46
LU1 H27 H27 H 0 1 N N N N N N -3.662 11.272 26.333 -1.378 -4.444 0.205 H27 LU1 47
LU1 H27A H27A H 0 0 N N N N N N -3.792 11.324 24.549 -1.378 -4.203 -1.559 H27A LU1 48
LU1 H19 H19 H 0 1 N N N N N N -1.966 9.252 25.941 0.700 -2.624 -1.218 H19 LU1 49
LU1 H15 H15 H 0 1 N N N N N N -4.178 9.029 23.939 0.712 -4.717 0.980 H15 LU1 50
LU1 H12 H12 H 0 1 N N N N N N -1.940 7.188 24.540 3.183 -4.454 0.090 H12 LU1 51
LU1 H11 H11 H 0 1 N N N N N N -3.668 7.178 22.465 2.139 -2.467 2.186 H11 LU1 52
LU1 H11A H11A H 0 0 N N N N N N -3.129 5.626 23.084 3.206 -3.888 2.434 H11A LU1 53
LU1 H8 H8 H 0 1 N N N N N N -5.749 7.141 23.875 4.158 -1.274 2.042 H8 LU1 54
LU1 HO22 HO22 H 0 0 N N N N N N -6.667 5.217 23.578 5.489 -3.194 2.637 HO22 LU1 55
LU1 H1 H1 H 0 1 N N N N N N -4.512 4.727 25.303 4.906 -2.299 -0.587 H1 LU1 56
LU1 H32 H32 H 0 1 N N N N N N -6.122 8.163 26.100 1.871 -0.052 -0.331 H32 LU1 57
LU1 H36 H36 H 0 1 N N N N N N -6.421 2.216 28.571 8.264 1.152 -0.433 H36 LU1 58
LU1 H37 H37 H 0 1 N N N N N N -9.399 5.010 30.411 4.791 4.659 0.088 H37 LU1 59
LU1 H37A H37A H 0 0 N N N N N N -8.550 6.591 30.333 5.641 4.747 -1.474 H37A LU1 60
LU1 H37B H37B H 0 0 N N N N N N -9.745 6.148 29.066 3.967 4.146 -1.405 H37B LU1 61
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LU1 O14 C6 DOUB N N 1
LU1 C2 C6 SING N N 2
LU1 C6 N16 SING N N 3
LU1 C4 C2 DOUB Y N 4
LU1 C2 C3 SING Y N 5
LU1 C9 C3 DOUB Y N 6
LU1 C3 O20 SING N N 7
LU1 O20 HO20 SING N N 8
LU1 C10 C9 SING Y N 9
LU1 C9 O21 SING N N 10
LU1 O21 HO21 SING N N 11
LU1 C7 C10 DOUB Y N 12
LU1 C10 H10 SING N N 13
LU1 C7 C4 SING Y N 14
LU1 C4 H4 SING N N 15
LU1 C13 C7 SING Y N 16
LU1 C18 C13 DOUB Y N 17
LU1 C13 C17 SING Y N 18
LU1 C24 C17 DOUB Y N 19
LU1 C17 H17 SING N N 20
LU1 C23 C24 SING Y N 21
LU1 C24 H24 SING N N 22
LU1 C25 C18 SING Y N 23
LU1 C18 H18 SING N N 24
LU1 C25 C23 DOUB Y N 25
LU1 C25 H25 SING N N 26
LU1 F26 C23 SING N N 27
LU1 N16 C27 SING N N 28
LU1 N16 HN16 SING N N 29
LU1 C19 C27 SING N N 30
LU1 C27 H27 SING N N 31
LU1 C27 H27A SING N N 32
LU1 C15 C19 DOUB N N 33
LU1 C19 H19 SING N E 34
LU1 C12 C15 SING N N 35
LU1 C15 H15 SING N N 36
LU1 C11 C12 SING N N 37
LU1 C12 O5 SING N N 38
LU1 C12 H12 SING N N 39
LU1 C11 C8 SING N N 40
LU1 C11 H11 SING N N 41
LU1 C11 H11A SING N N 42
LU1 O22 C8 SING N N 43
LU1 C8 C1 SING N N 44
LU1 C8 H8 SING N N 45
LU1 O22 HO22 SING N N 46
LU1 C1 O5 SING N N 47
LU1 C1 N28 SING N N 48
LU1 C1 H1 SING N N 49
LU1 N28 C32 SING Y N 50
LU1 N28 C29 SING Y N 51
LU1 C29 N33 SING Y N 52
LU1 C29 C30 DOUB Y N 53
LU1 N31 C30 SING Y N 54
LU1 C30 C34 SING Y N 55
LU1 C32 N31 DOUB Y N 56
LU1 C32 H32 SING N N 57
LU1 N33 C36 DOUB Y N 58
LU1 C36 N35 SING Y N 59
LU1 C36 H36 SING N N 60
LU1 C34 N35 DOUB Y N 61
LU1 C34 C37 SING N N 62
LU1 C37 H37 SING N N 63
LU1 C37 H37A SING N N 64
LU1 C37 H37B SING N N 65
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LU1 SMILES ACDLabs 12.01 Fc1ccc(cc1)c2cc(c(O)c(O)c2)C(=O)NC/C=C/C5OC(n4cnc3c(ncnc34)C)C(O)C5
LU1 SMILES_CANONICAL CACTVS 3.370 Cc1ncnc2n(cnc12)[C@@H]3O[C@@H](C[C@H]3O)\C=C\CNC(=O)c4cc(cc(O)c4O)c5ccc(F)cc5
LU1 SMILES CACTVS 3.370 Cc1ncnc2n(cnc12)[CH]3O[CH](C[CH]3O)C=CCNC(=O)c4cc(cc(O)c4O)c5ccc(F)cc5
LU1 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 Cc1c2c(ncn1)n(cn2)[C@H]3[C@@H](C[C@H](O3)/C=C/CNC(=O)c4cc(cc(c4O)O)c5ccc(cc5)F)O
LU1 SMILES "OpenEye OEToolkits" 1.7.2 Cc1c2c(ncn1)n(cn2)C3C(CC(O3)C=CCNC(=O)c4cc(cc(c4O)O)c5ccc(cc5)F)O
LU1 InChI InChI 1.03 InChI=1S/C26H24FN5O5/c1-14-22-24(30-12-29-14)32(13-31-22)26-21(34)11-18(37-26)3-2-8-28-25(36)19-9-16(10-20(33)23(19)35)15-4-6-17(27)7-5-15/h2-7,9-10,12-13,18,21,26,33-35H,8,11H2,1H3,(H,28,36)/b3-2+/t18-,21-,26-/m1/s1
LU1 InChIKey InChI 1.03 NFOSSDOJFGCEOO-DEAZYUCPSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LU1 "SYSTEMATIC NAME" ACDLabs 12.01 "4'-fluoro-4,5-dihydroxy-N-{(2E)-3-[(2S,4R,5R)-4-hydroxy-5-(6-methyl-9H-purin-9-yl)tetrahydrofuran-2-yl]prop-2-en-1-yl}biphenyl-3-carboxamide"
LU1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 5-(4-fluorophenyl)-N-[(E)-3-[(2S,4R,5R)-5-(6-methylpurin-9-yl)-4-oxidanyl-oxolan-2-yl]prop-2-enyl]-2,3-bis(oxidanyl)benzamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LU1 'Create component' 2011-04-21 RCSB
LU1 'Modify aromatic_flag' 2011-06-04 RCSB
LU1 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
LU1 O14 O 13.619 2.839 1
LU1 C6 C 12.250 3.452 2
LU1 C2 C 12.096 4.944 3
LU1 C3 C 13.311 5.823 4
LU1 O20 O 14.680 5.211 5
LU1 C9 C 13.157 7.315 6
LU1 O21 O 14.372 8.195 7
LU1 C10 C 11.787 7.928 8
LU1 C4 C 10.727 5.556 9
LU1 C7 C 10.572 7.048 10
LU1 C13 C 9.203 7.661 11
LU1 C17 C 9.049 9.153 12
LU1 C24 C 7.680 9.765 13
LU1 C18 C 7.988 6.781 14
LU1 C25 C 6.619 7.394 15
LU1 C23 C 6.465 8.886 16
LU1 F26 F 5.095 9.498 17
LU1 N16 N 11.035 2.572 18
LU1 C27 C 11.189 1.080 19
LU1 C19 C 9.974 0.200 20
LU1 C15 C 10.129 -1.292 21
LU1 C12 C 8.913 -2.171 22
LU1 C11 C 7.487 -1.705 23
LU1 C8 C 6.604 -2.917 24
LU1 O22 O 5.104 -2.915 25
LU1 C1 C 7.483 -4.132 26
LU1 O5 O 8.911 -3.671 27
LU1 N28 N 7.018 -5.558 28
LU1 C29 C 5.598 -6.015 29
LU1 C30 C 5.598 -7.515 30
LU1 N31 N 7.018 -7.972 31
LU1 C32 C 7.893 -6.765 32
LU1 N33 N 4.299 -5.265 33
LU1 C36 C 3.000 -6.015 34
LU1 N35 N 3.000 -7.515 35
LU1 C34 C 4.299 -8.265 36
LU1 C37 C 4.299 -9.765 37
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
LU1 O14 C6 DOUBLE NONE 1
LU1 C2 C6 SINGLE NONE 2
LU1 C6 N16 SINGLE NONE 3
LU1 C4 C2 SINGLE NONE 4
LU1 C2 C3 DOUBLE NONE 5
LU1 C9 C3 SINGLE NONE 6
LU1 C3 O20 SINGLE NONE 7
LU1 C10 C9 DOUBLE NONE 8
LU1 C9 O21 SINGLE NONE 9
LU1 C7 C10 SINGLE NONE 10
LU1 C7 C4 DOUBLE NONE 11
LU1 C13 C7 SINGLE NONE 12
LU1 C18 C13 SINGLE NONE 13
LU1 C13 C17 DOUBLE NONE 14
LU1 C24 C17 SINGLE NONE 15
LU1 C23 C24 DOUBLE NONE 16
LU1 C25 C18 DOUBLE NONE 17
LU1 C25 C23 SINGLE NONE 18
LU1 F26 C23 SINGLE NONE 19
LU1 N16 C27 SINGLE NONE 20
LU1 C19 C27 SINGLE ENDUPRIGHT 21
LU1 C15 C19 DOUBLE NONE 22
LU1 C12 C15 SINGLE BEGINWEDGE 23
LU1 C11 C12 SINGLE NONE 24
LU1 C12 O5 SINGLE NONE 25
LU1 C11 C8 SINGLE NONE 26
LU1 C8 O22 SINGLE BEGINDASH 27
LU1 C8 C1 SINGLE NONE 28
LU1 C1 O5 SINGLE NONE 29
LU1 C1 N28 SINGLE BEGINWEDGE 30
LU1 N28 C32 SINGLE NONE 31
LU1 N28 C29 SINGLE NONE 32
LU1 C29 N33 SINGLE NONE 33
LU1 C29 C30 DOUBLE NONE 34
LU1 N31 C30 SINGLE NONE 35
LU1 C30 C34 SINGLE NONE 36
LU1 C32 N31 DOUBLE NONE 37
LU1 N33 C36 DOUBLE NONE 38
LU1 C36 N35 SINGLE NONE 39
LU1 C34 N35 DOUBLE NONE 40
LU1 C34 C37 SINGLE NONE 41
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
LU1 MurckoScaffold S1 scaffold 'O=C(NC/C=C/[C@@H]1CC[C@H](n2cnc3cncnc32)O1)c1cccc(-c2ccccc2)c1' InChI=1S/C25H23N5O2/c31-25(20-9-4-8-19(14-20)18-6-2-1-3-7-18)27-13-5-10-21-11-12-23(32-21)30-17-29-22-15-26-16-28-24(22)30/h1-10,14-17,21,23H,11-13H2,(H,27,31)/b10-5+/t21-,23-/m1/s1 ABYUVGTUWGDGHY-UYEQGEOTSA-N
LU1 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
LU1 imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
LU1 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
LU1 purine F4 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
LU1 pyrimidine F5 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
LU1 O14 S1 1
LU1 C6 S1 1
LU1 C2 S1 1
LU1 C3 S1 1
LU1 C9 S1 1
LU1 C10 S1 1
LU1 C4 S1 1
LU1 C7 S1 1
LU1 C13 S1 1
LU1 C17 S1 1
LU1 C24 S1 1
LU1 C18 S1 1
LU1 C25 S1 1
LU1 C23 S1 1
LU1 N16 S1 1
LU1 C27 S1 1
LU1 C19 S1 1
LU1 C15 S1 1
LU1 C12 S1 1
LU1 C11 S1 1
LU1 C8 S1 1
LU1 C1 S1 1
LU1 O5 S1 1
LU1 N28 S1 1
LU1 C29 S1 1
LU1 C30 S1 1
LU1 N31 S1 1
LU1 C32 S1 1
LU1 N33 S1 1
LU1 C36 S1 1
LU1 N35 S1 1
LU1 C34 S1 1
LU1 N16 F1 1
LU1 C6 F1 1
LU1 O14 F1 1
LU1 C2 F1 1
LU1 C29 F2 1
LU1 C30 F2 1
LU1 N31 F2 1
LU1 C32 F2 1
LU1 N28 F2 1
LU1 C2 F3 1
LU1 C4 F3 1
LU1 C7 F3 1
LU1 C10 F3 1
LU1 C9 F3 1
LU1 C3 F3 1
LU1 C13 F3 2
LU1 C18 F3 2
LU1 C25 F3 2
LU1 C23 F3 2
LU1 C24 F3 2
LU1 C17 F3 2
LU1 N31 F4 1
LU1 C32 F4 1
LU1 N28 F4 1
LU1 C29 F4 1
LU1 C30 F4 1
LU1 C34 F4 1
LU1 N35 F4 1
LU1 C36 F4 1
LU1 N33 F4 1
LU1 C30 F5 1
LU1 C29 F5 1
LU1 N33 F5 1
LU1 C36 F5 1
LU1 N35 F5 1
LU1 C34 F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id LU1
_pdbe_chem_comp_rdkit_properties.exactmw 505.176
_pdbe_chem_comp_rdkit_properties.amw 505.506
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 37
_pdbe_chem_comp_rdkit_properties.NumAtoms 61
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.231
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 244.305
_pdbe_chem_comp_rdkit_properties.tpsa 142.620
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.144
_pdbe_chem_comp_rdkit_properties.CrippenMR 125.953
_pdbe_chem_comp_rdkit_properties.chi0v 17.655
_pdbe_chem_comp_rdkit_properties.chi1v 9.623
_pdbe_chem_comp_rdkit_properties.chi2v 4.420
_pdbe_chem_comp_rdkit_properties.chi3v 4.420
_pdbe_chem_comp_rdkit_properties.chi4v 2.825
_pdbe_chem_comp_rdkit_properties.chi0n 41.655
_pdbe_chem_comp_rdkit_properties.chi1n 21.295
_pdbe_chem_comp_rdkit_properties.chi2n 4.420
_pdbe_chem_comp_rdkit_properties.chi3n 4.420
_pdbe_chem_comp_rdkit_properties.chi4n 2.825
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.350
_pdbe_chem_comp_rdkit_properties.kappa1 8.891
_pdbe_chem_comp_rdkit_properties.kappa2 9.955
_pdbe_chem_comp_rdkit_properties.kappa3 4.862
_pdbe_chem_comp_rdkit_properties.Phi 2.392
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
LU1 UniChem PDBe LU1
LU1 UniChem ZINC ZINC000098209131
LU1 UniChem PubChem 56593140
LU1 UniChem BRENDA 87521
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
LU1 O14 0.447 0.852 -1.584 ETKDGv3 1
LU1 C6 1.379 0.666 -0.756 ETKDGv3 2
LU1 C2 2.634 0.021 -1.197 ETKDGv3 3
LU1 C3 2.646 -1.104 -1.951 ETKDGv3 4
LU1 O20 1.475 -1.792 -2.284 ETKDGv3 5
LU1 C9 3.941 -1.658 -2.422 ETKDGv3 6
LU1 O21 3.979 -2.801 -3.219 ETKDGv3 7
LU1 C10 5.091 -1.067 -2.077 ETKDGv3 8
LU1 C4 3.919 0.656 -0.814 ETKDGv3 9
LU1 C7 5.095 0.145 -1.224 ETKDGv3 10
LU1 C13 6.383 0.788 -0.858 ETKDGv3 11
LU1 C17 6.592 1.278 0.381 ETKDGv3 12
LU1 C24 7.885 1.902 0.731 ETKDGv3 13
LU1 C18 7.475 0.885 -1.863 ETKDGv3 14
LU1 C25 8.645 1.450 -1.540 ETKDGv3 15
LU1 C23 8.861 1.983 -0.180 ETKDGv3 16
LU1 F26 10.048 2.554 0.142 ETKDGv3 17
LU1 N16 1.238 1.113 0.602 ETKDGv3 18
LU1 C27 -0.022 1.624 1.137 ETKDGv3 19
LU1 C19 -0.763 0.531 1.853 ETKDGv3 20
LU1 C15 -1.264 -0.524 1.194 ETKDGv3 21
LU1 C12 -2.018 -1.608 1.926 ETKDGv3 22
LU1 C11 -2.356 -2.781 1.011 ETKDGv3 23
LU1 C8 -3.777 -2.501 0.620 ETKDGv3 24
LU1 O22 -4.503 -3.686 0.426 ETKDGv3 25
LU1 C1 -4.295 -1.736 1.829 ETKDGv3 26
LU1 O5 -3.216 -1.067 2.444 ETKDGv3 27
LU1 N28 -5.327 -0.776 1.442 ETKDGv3 28
LU1 C29 -5.152 0.429 0.717 ETKDGv3 29
LU1 C30 -6.264 0.753 0.113 ETKDGv3 30
LU1 N31 -7.272 -0.221 0.358 ETKDGv3 31
LU1 C32 -6.690 -1.096 1.127 ETKDGv3 32
LU1 N33 -3.924 1.122 0.467 ETKDGv3 33
LU1 C36 -3.930 2.123 -0.373 ETKDGv3 34
LU1 N35 -5.152 2.503 -1.054 ETKDGv3 35
LU1 C34 -6.277 1.874 -0.836 ETKDGv3 36
LU1 C37 -7.512 2.240 -1.591 ETKDGv3 37
LU1 HO20 0.565 -1.569 -1.903 ETKDGv3 38
LU1 HO21 3.134 -3.281 -3.504 ETKDGv3 39
LU1 H10 6.028 -1.495 -2.411 ETKDGv3 40
LU1 H4 3.898 1.567 -0.227 ETKDGv3 41
LU1 H17 5.829 1.204 1.146 ETKDGv3 42
LU1 H24 8.040 2.290 1.730 ETKDGv3 43
LU1 H18 7.327 0.514 -2.869 ETKDGv3 44
LU1 H25 9.434 1.523 -2.278 ETKDGv3 45
LU1 HN16 2.012 0.926 1.279 ETKDGv3 46
LU1 H27 0.200 2.440 1.857 ETKDGv3 47
LU1 H27A -0.657 2.053 0.333 ETKDGv3 48
LU1 H19 -0.897 0.611 2.928 ETKDGv3 49
LU1 H15 -1.134 -0.592 0.118 ETKDGv3 50
LU1 H12 -1.388 -1.974 2.766 ETKDGv3 51
LU1 H11 -2.299 -3.729 1.592 ETKDGv3 52
LU1 H11A -1.691 -2.866 0.123 ETKDGv3 53
LU1 H8 -3.801 -1.862 -0.295 ETKDGv3 54
LU1 HO22 -4.216 -4.050 -0.452 ETKDGv3 55
LU1 H1 -4.724 -2.446 2.571 ETKDGv3 56
LU1 H32 -7.186 -1.995 1.468 ETKDGv3 57
LU1 H36 -3.014 2.661 -0.574 ETKDGv3 58
LU1 H37 -7.658 1.527 -2.429 ETKDGv3 59
LU1 H37A -7.427 3.269 -2.001 ETKDGv3 60
LU1 H37B -8.395 2.199 -0.919 ETKDGv3 61
#