data_LU7
#
_chem_comp.id LU7
_chem_comp.name
N~1~-{5-[(3-{[3-(L-arginylamino)propyl]amino}propyl)amino]pentyl}-N~2~-[(2,4-dihydroxyphenyl)acetyl]-L-aspartamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C29 H52 N10 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "Argiotoxin 636"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-03-14
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 636.787
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code LU7
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6O9G
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LU7 OAH O1 O 0 1 N N N N N N 161.234 159.868 113.679 -10.681 2.207 -1.984 OAH LU7 1
LU7 CAD C1 C 0 1 Y N N N N N 161.636 161.198 113.847 -11.554 2.530 -0.994 CAD LU7 2
LU7 CAE C2 C 0 1 Y N N N N N 162.156 161.617 115.060 -11.896 3.855 -0.776 CAE LU7 3
LU7 CAF C3 C 0 1 Y N N N N N 162.553 162.933 115.226 -12.788 4.181 0.234 CAF LU7 4
LU7 OAG O2 O 0 1 N N N N N N 163.079 163.356 116.454 -13.126 5.480 0.449 OAG LU7 5
LU7 CAA C4 C 0 1 Y N N N N N 162.431 163.831 114.179 -13.335 3.181 1.025 CAA LU7 6
LU7 CAB C5 C 0 1 Y N N N N N 161.911 163.413 112.965 -12.991 1.861 0.807 CAB LU7 7
LU7 CAC C6 C 0 1 Y N N N N N 161.513 162.096 112.799 -12.108 1.532 -0.204 CAC LU7 8
LU7 CAI C7 C 0 1 N N N N N N 160.938 161.634 111.460 -11.735 0.091 -0.440 CAI LU7 9
LU7 CAJ C8 C 0 1 N N N N N N 161.812 162.045 110.275 -10.456 -0.223 0.292 CAJ LU7 10
LU7 OAK O3 O 0 1 N N N N N N 162.779 162.706 110.452 -9.901 0.638 0.941 OAK LU7 11
LU7 N N1 N 0 1 N N N N N N 161.451 161.623 108.931 -9.928 -1.462 0.225 N LU7 12
LU7 CA C9 C 0 1 N N S N N N 162.274 162.008 107.797 -8.631 -1.740 0.846 CA LU7 13
LU7 CB C10 C 0 1 N N N N N N 163.657 161.374 107.931 -8.505 -3.241 1.112 CB LU7 14
LU7 CG C11 C 0 1 N N N N N N 163.917 160.466 109.132 -9.523 -3.657 2.142 CG LU7 15
LU7 OD1 O4 O 0 1 N N N N N N 163.589 159.328 109.096 -10.207 -2.819 2.691 OD1 LU7 16
LU7 ND2 N2 N 0 1 N N N N N N 164.567 160.997 110.318 -9.673 -4.959 2.454 ND2 LU7 17
LU7 C C12 C 0 1 N N N N N N 161.618 161.524 106.505 -7.526 -1.299 -0.079 C LU7 18
LU7 O O5 O 0 1 N N N N N N 160.720 160.754 106.549 -7.796 -0.801 -1.151 O LU7 19
LU7 NAT N3 N 0 1 N N N N N N 162.095 162.006 105.222 -6.239 -1.457 0.286 NAT LU7 20
LU7 CAU C13 C 0 1 N N N N N N 161.467 161.542 103.998 -5.164 -1.028 -0.613 CAU LU7 21
LU7 CAV C14 C 0 1 N N N N N N 162.178 162.120 102.776 -3.810 -1.319 0.036 CAV LU7 22
LU7 CAW C15 C 0 1 N N N N N N 161.415 161.839 101.482 -2.688 -0.871 -0.903 CAW LU7 23
LU7 CAX C16 C 0 1 N N N N N N 162.208 162.231 100.236 -1.333 -1.161 -0.255 CAX LU7 24
LU7 CAY C17 C 0 1 N N N N N N 161.598 161.652 98.960 -0.211 -0.713 -1.194 CAY LU7 25
LU7 NAZ N4 N 0 1 N N N N N N 162.068 162.377 97.792 1.089 -0.992 -0.571 NAZ LU7 26
LU7 CBA C18 C 0 1 N N N N N N 161.754 161.612 96.597 2.193 -0.574 -1.446 CBA LU7 27
LU7 CBB C19 C 0 1 N N N N N N 161.724 162.519 95.369 3.528 -0.880 -0.764 CBB LU7 28
LU7 CBC C20 C 0 1 N N N N N N 162.058 161.761 94.088 4.677 -0.444 -1.676 CBC LU7 29
LU7 NBD N5 N 0 1 N N N N N N 161.355 162.336 92.955 5.959 -0.738 -1.022 NBD LU7 30
LU7 CBE C21 C 0 1 N N N N N N 162.110 162.079 91.742 7.088 -0.332 -1.870 CBE LU7 31
LU7 CBF C22 C 0 1 N N N N N N 161.183 162.069 90.527 8.403 -0.653 -1.156 CBF LU7 32
LU7 CBG C23 C 0 1 N N N N N N 161.928 162.408 89.237 9.579 -0.231 -2.040 CBG LU7 33
LU7 NBH N6 N 0 1 N N N N N N 161.229 161.865 88.086 10.838 -0.538 -1.357 NBH LU7 34
LU7 CBI C24 C 0 1 N N N N N N 161.611 162.281 86.748 12.014 -0.251 -1.950 CBI LU7 35
LU7 OBJ O6 O 0 1 N N N N N N 162.490 163.061 86.600 12.029 0.262 -3.049 OBJ LU7 36
LU7 CBK C25 C 0 1 N N S N N N 160.883 161.715 85.531 13.309 -0.567 -1.247 CBK LU7 37
LU7 NBS N7 N 0 1 N N N N N N 159.500 162.154 85.544 14.399 -0.621 -2.231 NBS LU7 38
LU7 CBL C26 C 0 1 N N N N N N 161.566 162.217 84.261 13.608 0.521 -0.214 CBL LU7 39
LU7 CBM C27 C 0 1 N N N N N N 161.024 161.543 83.002 14.855 0.138 0.585 CBM LU7 40
LU7 CBN C28 C 0 1 N N N N N N 161.531 162.214 81.727 15.154 1.226 1.618 CBN LU7 41
LU7 NBO N8 N 0 1 N N N N N N 161.577 161.259 80.636 16.348 0.859 2.383 NBO LU7 42
LU7 CBP C29 C 0 1 N N N N N N 161.454 161.719 79.264 16.812 1.690 3.374 CBP LU7 43
LU7 NBR N9 N 0 1 N N N N N N 161.309 162.940 79.024 16.189 2.805 3.634 NBR LU7 44
LU7 NBQ N10 N 0 1 N N N N N N 161.494 160.896 78.322 17.932 1.345 4.092 NBQ LU7 45
LU7 HAH1 H1 H 0 0 N N N N N N 161.383 159.387 114.485 -9.755 2.194 -1.704 HAH1 LU7 46
LU7 HAE1 H2 H 0 0 N N N N N N 162.252 160.917 115.877 -11.470 4.633 -1.393 HAE1 LU7 47
LU7 HAG1 H3 H 0 0 N N N N N N 163.095 162.625 117.061 -13.897 5.775 -0.055 HAG1 LU7 48
LU7 HAA1 H4 H 0 0 N N N N N N 162.741 164.857 114.309 -14.029 3.435 1.812 HAA1 LU7 49
LU7 HAB1 H5 H 0 0 N N N N N N 161.816 164.113 112.148 -13.417 1.083 1.423 HAB1 LU7 50
LU7 HAI1 H6 H 0 0 N N N N N N 159.940 162.078 111.333 -12.533 -0.555 -0.072 HAI1 LU7 51
LU7 HAI2 H7 H 0 0 N N N N N N 160.853 160.537 111.472 -11.594 -0.078 -1.507 HAI2 LU7 52
LU7 H H8 H 0 1 N N N N N N 160.633 161.066 108.787 -10.408 -2.169 -0.235 H LU7 53
LU7 HA H9 H 0 1 N N N N N N 162.381 163.102 107.760 -8.555 -1.197 1.788 HA LU7 54
LU7 HB2 H10 H 0 1 N N N N N N 163.832 160.775 107.025 -8.679 -3.790 0.186 HB2 LU7 55
LU7 HB3 H11 H 0 1 N N N N N N 164.389 162.193 107.976 -7.503 -3.462 1.481 HB3 LU7 56
LU7 HD23 H12 H 0 0 N N N N N N 164.737 160.402 111.104 -9.126 -5.629 2.015 HD23 LU7 57
LU7 HD22 H13 H 0 0 N N N N N N 164.844 161.957 110.349 -10.328 -5.227 3.118 HD22 LU7 58
LU7 HAT1 H14 H 0 0 N N N N N N 162.854 162.656 105.181 -6.023 -1.856 1.144 HAT1 LU7 59
LU7 HAU1 H15 H 0 0 N N N N N N 160.414 161.861 103.988 -5.240 -1.571 -1.555 HAU1 LU7 60
LU7 HAU2 H16 H 0 0 N N N N N N 161.517 160.444 103.960 -5.255 0.041 -0.803 HAU2 LU7 61
LU7 HAV1 H17 H 0 0 N N N N N N 163.179 161.670 102.702 -3.734 -0.775 0.978 HAV1 LU7 62
LU7 HAV2 H18 H 0 0 N N N N N N 162.273 163.209 102.903 -3.719 -2.388 0.225 HAV2 LU7 63
LU7 HAW1 H19 H 0 0 N N N N N N 160.475 162.410 101.496 -2.764 -1.414 -1.845 HAW1 LU7 64
LU7 HAW2 H20 H 0 0 N N N N N N 161.189 160.764 101.432 -2.778 0.199 -1.093 HAW2 LU7 65
LU7 HAX2 H21 H 0 0 N N N N N N 163.237 161.857 100.338 -1.257 -0.618 0.687 HAX2 LU7 66
LU7 HAX1 H22 H 0 0 N N N N N N 162.223 163.328 100.156 -1.243 -2.231 -0.065 HAX1 LU7 67
LU7 HAY2 H23 H 0 0 N N N N N N 160.502 161.729 99.016 -0.287 -1.256 -2.135 HAY2 LU7 68
LU7 HAY1 H24 H 0 0 N N N N N N 161.887 160.595 98.869 -0.301 0.356 -1.383 HAY1 LU7 69
LU7 H1 H25 H 0 1 N N N N N N 163.057 162.508 97.855 1.172 -1.968 -0.326 H1 LU7 70
LU7 HBA2 H27 H 0 0 N N N N N N 160.769 161.138 96.720 2.134 -1.116 -2.389 HBA2 LU7 71
LU7 HBA1 H28 H 0 0 N N N N N N 162.520 160.835 96.454 2.119 0.497 -1.637 HBA1 LU7 72
LU7 HBB1 H29 H 0 0 N N N N N N 162.459 163.326 95.506 3.587 -0.338 0.179 HBB1 LU7 73
LU7 HBB2 H30 H 0 0 N N N N N N 160.718 162.952 95.273 3.602 -1.950 -0.573 HBB2 LU7 74
LU7 HBC1 H31 H 0 0 N N N N N N 161.759 160.709 94.202 4.618 -0.987 -2.619 HBC1 LU7 75
LU7 HBC2 H32 H 0 0 N N N N N N 163.142 161.817 93.907 4.604 0.626 -1.867 HBC2 LU7 76
LU7 H2 H33 H 0 1 N N N N N N 161.260 163.323 93.087 6.025 -1.714 -0.776 H2 LU7 77
LU7 HBE2 H35 H 0 0 N N N N N N 162.608 161.102 91.826 7.046 -0.874 -2.815 HBE2 LU7 78
LU7 HBE1 H36 H 0 0 N N N N N N 162.867 162.866 91.613 7.031 0.739 -2.062 HBE1 LU7 79
LU7 HBF1 H37 H 0 0 N N N N N N 160.386 162.811 90.682 8.446 -0.112 -0.212 HBF1 LU7 80
LU7 HBF2 H38 H 0 0 N N N N N N 160.738 161.068 90.428 8.460 -1.725 -0.964 HBF2 LU7 81
LU7 HBG1 H39 H 0 0 N N N N N N 162.940 161.979 89.281 9.536 -0.772 -2.985 HBG1 LU7 82
LU7 HBG2 H40 H 0 0 N N N N N N 161.997 163.501 89.136 9.522 0.841 -2.232 HBG2 LU7 83
LU7 HBH1 H41 H 0 0 N N N N N N 160.487 161.207 88.214 10.825 -0.948 -0.478 HBH1 LU7 84
LU7 HBK1 H42 H 0 0 N N N N N N 160.933 160.617 85.558 13.224 -1.531 -0.745 HBK1 LU7 85
LU7 HBS2 H43 H 0 0 N N N N N N 159.053 161.825 86.376 14.498 0.261 -2.710 HBS2 LU7 86
LU7 H3 H44 H 0 1 N N N N N N 159.467 163.153 85.521 15.266 -0.895 -1.794 H3 LU7 87
LU7 HBL2 H46 H 0 0 N N N N N N 162.644 162.012 84.335 13.780 1.469 -0.724 HBL2 LU7 88
LU7 HBL1 H47 H 0 0 N N N N N N 161.404 163.302 84.178 12.759 0.622 0.463 HBL1 LU7 89
LU7 HBM2 H48 H 0 0 N N N N N N 159.925 161.595 83.017 14.682 -0.810 1.095 HBM2 LU7 90
LU7 HBM1 H49 H 0 0 N N N N N N 161.342 160.490 82.999 15.703 0.037 -0.092 HBM1 LU7 91
LU7 HBN2 H50 H 0 0 N N N N N N 162.542 162.611 81.904 15.326 2.174 1.107 HBN2 LU7 92
LU7 HBN1 H51 H 0 0 N N N N N N 160.855 163.039 81.458 14.305 1.327 2.295 HBN1 LU7 93
LU7 HBO1 H52 H 0 0 N N N N N N 161.693 160.285 80.829 16.811 0.029 2.189 HBO1 LU7 94
LU7 HBR2 H53 H 0 0 N N N N N N 161.294 163.487 79.861 15.398 3.049 3.128 HBR2 LU7 95
LU7 HBQ1 H54 H 0 0 N N N N N N 161.611 159.922 78.514 18.396 0.516 3.899 HBQ1 LU7 96
LU7 H4 H55 H 0 1 N N N N N N 161.409 161.213 77.377 18.260 1.932 4.792 H4 LU7 97
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LU7 NBQ CBP SING N N 1
LU7 NBR CBP DOUB N N 2
LU7 CBP NBO SING N N 3
LU7 NBO CBN SING N N 4
LU7 CBN CBM SING N N 5
LU7 CBM CBL SING N N 6
LU7 CBL CBK SING N N 7
LU7 CBK NBS SING N N 8
LU7 CBK CBI SING N N 9
LU7 OBJ CBI DOUB N N 10
LU7 CBI NBH SING N N 11
LU7 NBH CBG SING N N 12
LU7 CBG CBF SING N N 13
LU7 CBF CBE SING N N 14
LU7 CBE NBD SING N N 15
LU7 NBD CBC SING N N 16
LU7 CBC CBB SING N N 17
LU7 CBB CBA SING N N 18
LU7 CBA NAZ SING N N 19
LU7 NAZ CAY SING N N 20
LU7 CAY CAX SING N N 21
LU7 CAX CAW SING N N 22
LU7 CAW CAV SING N N 23
LU7 CAV CAU SING N N 24
LU7 CAU NAT SING N N 25
LU7 NAT C SING N N 26
LU7 C O DOUB N N 27
LU7 C CA SING N N 28
LU7 CA CB SING N N 29
LU7 CA N SING N N 30
LU7 CB CG SING N N 31
LU7 N CAJ SING N N 32
LU7 OD1 CG DOUB N N 33
LU7 CG ND2 SING N N 34
LU7 CAJ OAK DOUB N N 35
LU7 CAJ CAI SING N N 36
LU7 CAI CAC SING N N 37
LU7 CAC CAB DOUB Y N 38
LU7 CAC CAD SING Y N 39
LU7 CAB CAA SING Y N 40
LU7 OAH CAD SING N N 41
LU7 CAD CAE DOUB Y N 42
LU7 CAA CAF DOUB Y N 43
LU7 CAE CAF SING Y N 44
LU7 CAF OAG SING N N 45
LU7 OAH HAH1 SING N N 46
LU7 CAE HAE1 SING N N 47
LU7 OAG HAG1 SING N N 48
LU7 CAA HAA1 SING N N 49
LU7 CAB HAB1 SING N N 50
LU7 CAI HAI1 SING N N 51
LU7 CAI HAI2 SING N N 52
LU7 N H SING N N 53
LU7 CA HA SING N N 54
LU7 CB HB2 SING N N 55
LU7 CB HB3 SING N N 56
LU7 ND2 HD23 SING N N 57
LU7 ND2 HD22 SING N N 58
LU7 NAT HAT1 SING N N 59
LU7 CAU HAU1 SING N N 60
LU7 CAU HAU2 SING N N 61
LU7 CAV HAV1 SING N N 62
LU7 CAV HAV2 SING N N 63
LU7 CAW HAW1 SING N N 64
LU7 CAW HAW2 SING N N 65
LU7 CAX HAX2 SING N N 66
LU7 CAX HAX1 SING N N 67
LU7 CAY HAY2 SING N N 68
LU7 CAY HAY1 SING N N 69
LU7 NAZ H1 SING N N 70
LU7 CBA HBA2 SING N N 71
LU7 CBA HBA1 SING N N 72
LU7 CBB HBB1 SING N N 73
LU7 CBB HBB2 SING N N 74
LU7 CBC HBC1 SING N N 75
LU7 CBC HBC2 SING N N 76
LU7 NBD H2 SING N N 77
LU7 CBE HBE2 SING N N 78
LU7 CBE HBE1 SING N N 79
LU7 CBF HBF1 SING N N 80
LU7 CBF HBF2 SING N N 81
LU7 CBG HBG1 SING N N 82
LU7 CBG HBG2 SING N N 83
LU7 NBH HBH1 SING N N 84
LU7 CBK HBK1 SING N N 85
LU7 NBS HBS2 SING N N 86
LU7 NBS H3 SING N N 87
LU7 CBL HBL2 SING N N 88
LU7 CBL HBL1 SING N N 89
LU7 CBM HBM2 SING N N 90
LU7 CBM HBM1 SING N N 91
LU7 CBN HBN2 SING N N 92
LU7 CBN HBN1 SING N N 93
LU7 NBO HBO1 SING N N 94
LU7 NBR HBR2 SING N N 95
LU7 NBQ HBQ1 SING N N 96
LU7 NBQ H4 SING N N 97
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LU7 SMILES ACDLabs 12.01 Oc1cc(O)ccc1CC(=O)NC(CC(N)=O)C(=O)NCCCCCNCCCNCCCNC(=O)C(N)CCCN\C(=N)N
LU7 InChI InChI 1.03 InChI=1S/C29H52N10O6/c30-22(7-4-15-38-29(32)33)27(44)36-16-6-13-35-12-5-11-34-10-2-1-3-14-37-28(45)23(19-25(31)42)39-26(43)17-20-8-9-21(40)18-24(20)41/h8-9,18,22-23,34-35,40-41H,1-7,10-17,19,30H2,(H2,31,42)(H,36,44)(H,37,45)(H,39,43)(H4,32,33,38)/t22-,23-/m0/s1
LU7 InChIKey InChI 1.03 FTNICLJXPYLDAH-GOTSBHOMSA-N
LU7 SMILES_CANONICAL CACTVS 3.385 N[C@@H](CCCNC(N)=N)C(=O)NCCCNCCCNCCCCCNC(=O)[C@H](CC(N)=O)NC(=O)Cc1ccc(O)cc1O
LU7 SMILES CACTVS 3.385 N[CH](CCCNC(N)=N)C(=O)NCCCNCCCNCCCCCNC(=O)[CH](CC(N)=O)NC(=O)Cc1ccc(O)cc1O
LU7 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C(\N)/NCCC[C@@H](C(=O)NCCCNCCCNCCCCCNC(=O)[C@H](CC(=O)N)NC(=O)Cc1ccc(cc1O)O)N"
LU7 SMILES "OpenEye OEToolkits" 2.0.7 c1cc(c(cc1O)O)CC(=O)NC(CC(=O)N)C(=O)NCCCCCNCCCNCCCNC(=O)C(CCCNC(=N)N)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LU7 "SYSTEMATIC NAME" ACDLabs 12.01 N~1~-{5-[(3-{[3-(L-arginylamino)propyl]amino}propyl)amino]pentyl}-N~2~-[(2,4-dihydroxyphenyl)acetyl]-L-aspartamide
LU7 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 (2~{S})-~{N}-[5-[3-[3-[[(2~{S})-2-azanyl-5-carbamimidamido-pentanoyl]amino]propylamino]propylamino]pentyl]-2-[2-[2,4-bis(oxidanyl)phenyl]ethanoylamino]butanediamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LU7 'Create component' 2019-03-14 RCSB
LU7 'Initial release' 2019-03-20 RCSB
LU7 'Modify synonyms' 2020-06-05 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id LU7
_pdbx_chem_comp_synonyms.name "Argiotoxin 636"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id LU7
_pdbe_chem_comp_synonyms.name 'Argiotoxin 636'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
LU7 OAH O 18.095 -10.875 1
LU7 CAD C 19.394 -11.625 2
LU7 CAE C 19.394 -13.125 3
LU7 CAF C 20.693 -13.875 4
LU7 OAG O 20.693 -15.375 5
LU7 CAA C 21.992 -13.125 6
LU7 CAB C 21.992 -11.625 7
LU7 CAC C 20.693 -10.875 8
LU7 CAI C 20.693 -9.375 9
LU7 CAJ C 21.992 -8.625 10
LU7 OAK O 23.291 -9.375 11
LU7 N N 21.992 -7.125 12
LU7 CA C 23.291 -6.375 13
LU7 CB C 24.590 -7.125 14
LU7 CG C 25.889 -6.375 15
LU7 OD1 O 25.889 -4.875 16
LU7 ND2 N 27.188 -7.125 17
LU7 C C 23.291 -4.875 18
LU7 O O 24.590 -4.125 19
LU7 NAT N 21.992 -4.125 20
LU7 CAU C 21.992 -2.625 21
LU7 CAV C 20.693 -1.875 22
LU7 CAW C 20.693 -0.375 23
LU7 CAX C 19.394 0.375 24
LU7 CAY C 19.394 1.875 25
LU7 NAZ N 18.095 2.625 26
LU7 CBA C 18.095 4.125 27
LU7 CBB C 16.796 4.875 28
LU7 CBC C 16.796 6.375 29
LU7 NBD N 15.497 7.125 30
LU7 CBE C 15.497 8.625 31
LU7 CBF C 14.198 9.375 32
LU7 CBG C 14.198 10.875 33
LU7 NBH N 12.899 11.625 34
LU7 CBI C 12.899 13.125 35
LU7 OBJ O 14.198 13.875 36
LU7 CBK C 11.600 13.875 37
LU7 NBS N 11.600 15.375 38
LU7 CBL C 10.301 13.125 39
LU7 CBM C 9.002 13.875 40
LU7 CBN C 7.702 13.125 41
LU7 NBO N 6.404 13.875 42
LU7 CBP C 5.104 13.125 43
LU7 NBR N 5.104 11.625 44
LU7 NBQ N 3.805 13.875 45
LU7 HBR2 H 6.404 10.875 46
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
LU7 NBQ CBP SINGLE ENDDOWNRIGHT 1
LU7 NBR CBP DOUBLE NONE 2
LU7 CBP NBO SINGLE ENDDOWNRIGHT 3
LU7 NBO CBN SINGLE NONE 4
LU7 CBN CBM SINGLE NONE 5
LU7 CBM CBL SINGLE NONE 6
LU7 CBL CBK SINGLE NONE 7
LU7 CBK NBS SINGLE BEGINDASH 8
LU7 CBK CBI SINGLE NONE 9
LU7 OBJ CBI DOUBLE NONE 10
LU7 CBI NBH SINGLE NONE 11
LU7 NBH CBG SINGLE NONE 12
LU7 CBG CBF SINGLE NONE 13
LU7 CBF CBE SINGLE NONE 14
LU7 CBE NBD SINGLE NONE 15
LU7 NBD CBC SINGLE NONE 16
LU7 CBC CBB SINGLE NONE 17
LU7 CBB CBA SINGLE NONE 18
LU7 CBA NAZ SINGLE NONE 19
LU7 NAZ CAY SINGLE NONE 20
LU7 CAY CAX SINGLE NONE 21
LU7 CAX CAW SINGLE NONE 22
LU7 CAW CAV SINGLE NONE 23
LU7 CAV CAU SINGLE NONE 24
LU7 CAU NAT SINGLE NONE 25
LU7 NAT C SINGLE NONE 26
LU7 C O DOUBLE NONE 27
LU7 C CA SINGLE NONE 28
LU7 CA CB SINGLE BEGINDASH 29
LU7 CA N SINGLE NONE 30
LU7 CB CG SINGLE NONE 31
LU7 N CAJ SINGLE NONE 32
LU7 OD1 CG DOUBLE NONE 33
LU7 CG ND2 SINGLE NONE 34
LU7 CAJ OAK DOUBLE NONE 35
LU7 CAJ CAI SINGLE NONE 36
LU7 CAI CAC SINGLE NONE 37
LU7 CAC CAB SINGLE NONE 38
LU7 CAC CAD DOUBLE NONE 39
LU7 CAB CAA DOUBLE NONE 40
LU7 OAH CAD SINGLE NONE 41
LU7 CAD CAE SINGLE NONE 42
LU7 CAA CAF SINGLE NONE 43
LU7 CAE CAF DOUBLE NONE 44
LU7 CAF OAG SINGLE NONE 45
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
LU7 MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
LU7 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
LU7 peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
LU7 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
LU7 CAD S1 1
LU7 CAE S1 1
LU7 CAF S1 1
LU7 CAA S1 1
LU7 CAB S1 1
LU7 CAC S1 1
LU7 N F1 1
LU7 CAJ F1 1
LU7 OAK F1 1
LU7 CAI F1 1
LU7 ND2 F1 2
LU7 CG F1 2
LU7 OD1 F1 2
LU7 CB F1 2
LU7 NAT F1 3
LU7 C F1 3
LU7 O F1 3
LU7 CA F1 3
LU7 NBH F1 4
LU7 CBI F1 4
LU7 OBJ F1 4
LU7 CBK F1 4
LU7 O F2 1
LU7 C F2 1
LU7 CA F2 1
LU7 N F2 1
LU7 OBJ F2 2
LU7 CBI F2 2
LU7 CBK F2 2
LU7 NBS F2 2
LU7 CAD F3 1
LU7 CAC F3 1
LU7 CAB F3 1
LU7 CAA F3 1
LU7 CAF F3 1
LU7 CAE F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id LU7
_pdbe_chem_comp_rdkit_properties.exactmw 636.407
_pdbe_chem_comp_rdkit_properties.amw 636.799
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 16
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 15
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 28
_pdbe_chem_comp_rdkit_properties.NumHBD 12
_pdbe_chem_comp_rdkit_properties.NumHBA 10
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 45
_pdbe_chem_comp_rdkit_properties.NumAtoms 97
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 16
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 4
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.621
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 338.050
_pdbe_chem_comp_rdkit_properties.tpsa 282.830
_pdbe_chem_comp_rdkit_properties.CrippenClogP -3.026
_pdbe_chem_comp_rdkit_properties.CrippenMR 169.702
_pdbe_chem_comp_rdkit_properties.chi0v 21.422
_pdbe_chem_comp_rdkit_properties.chi1v 10.552
_pdbe_chem_comp_rdkit_properties.chi2v 3.223
_pdbe_chem_comp_rdkit_properties.chi3v 3.223
_pdbe_chem_comp_rdkit_properties.chi4v 1.715
_pdbe_chem_comp_rdkit_properties.chi0n 73.422
_pdbe_chem_comp_rdkit_properties.chi1n 35.683
_pdbe_chem_comp_rdkit_properties.chi2n 3.223
_pdbe_chem_comp_rdkit_properties.chi3n 3.223
_pdbe_chem_comp_rdkit_properties.chi4n 1.715
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.150
_pdbe_chem_comp_rdkit_properties.kappa1 7.525
_pdbe_chem_comp_rdkit_properties.kappa2 23.261
_pdbe_chem_comp_rdkit_properties.kappa3 19.687
_pdbe_chem_comp_rdkit_properties.Phi 3.890
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
LU7 UniChem ChEMBL CHEMBL1098240
LU7 UniChem PDBe LU7
LU7 UniChem 'Guide to Pharmacology' 4138
LU7 UniChem 'KEGG LIGAND' C13927
LU7 UniChem ChEBI 34541
LU7 UniChem ZINC ZINC000003934756
LU7 UniChem SureChEMBL SCHEMBL17014644
LU7 UniChem 'PubChem TPHARMA' 15508129
LU7 UniChem ACTor 105029-41-2
LU7 UniChem Nikkaji J246.963D
LU7 UniChem BindingDb 50316373
LU7 UniChem 'Probes And Drugs' PD051481
LU7 UniChem ACTor 108687-79-2
LU7 UniChem PubChem 122294
LU7 UniChem NMRShiftDB 70080101
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
LU7 OAH 8.998 3.552 -1.731 ETKDGv3 1
LU7 CAD 9.879 2.598 -1.214 ETKDGv3 2
LU7 CAE 10.560 2.931 0.058 ETKDGv3 3
LU7 CAF 11.404 2.067 0.632 ETKDGv3 4
LU7 OAG 12.027 2.400 1.831 ETKDGv3 5
LU7 CAA 11.666 0.764 -0.011 ETKDGv3 6
LU7 CAB 11.065 0.452 -1.163 ETKDGv3 7
LU7 CAC 10.128 1.404 -1.815 ETKDGv3 8
LU7 CAI 9.453 0.948 -3.087 ETKDGv3 9
LU7 CAJ 8.292 0.052 -2.768 ETKDGv3 10
LU7 OAK 8.414 -1.194 -2.921 ETKDGv3 11
LU7 N 7.068 0.603 -2.261 ETKDGv3 12
LU7 CA 5.955 -0.243 -1.810 ETKDGv3 13
LU7 CB 6.186 -0.722 -0.365 ETKDGv3 14
LU7 CG 6.338 0.417 0.604 ETKDGv3 15
LU7 OD1 5.315 0.948 1.113 ETKDGv3 16
LU7 ND2 7.633 0.921 0.930 ETKDGv3 17
LU7 C 4.629 0.468 -1.942 ETKDGv3 18
LU7 O 4.571 1.727 -1.876 ETKDGv3 19
LU7 NAT 3.424 -0.299 -2.078 ETKDGv3 20
LU7 CAU 2.095 0.310 -2.051 ETKDGv3 21
LU7 CAV 1.725 0.791 -0.639 ETKDGv3 22
LU7 CAW 1.836 -0.299 0.445 ETKDGv3 23
LU7 CAX 0.940 -1.531 0.217 ETKDGv3 24
LU7 CAY -0.563 -1.210 0.135 ETKDGv3 25
LU7 NAZ -1.028 -0.385 1.262 ETKDGv3 26
LU7 CBA -1.043 -1.072 2.568 ETKDGv3 27
LU7 CBB -1.972 -2.301 2.645 ETKDGv3 28
LU7 CBC -3.423 -1.987 2.261 ETKDGv3 29
LU7 NBD -4.290 -3.141 2.544 ETKDGv3 30
LU7 CBE -4.854 -3.149 3.906 ETKDGv3 31
LU7 CBF -5.907 -2.052 4.180 ETKDGv3 32
LU7 CBG -7.087 -2.042 3.193 ETKDGv3 33
LU7 NBH -6.795 -1.215 2.021 ETKDGv3 34
LU7 CBI -6.767 0.221 2.079 ETKDGv3 35
LU7 OBJ -7.020 0.813 3.163 ETKDGv3 36
LU7 CBK -6.491 1.044 0.844 ETKDGv3 37
LU7 NBS -5.515 0.377 -0.020 ETKDGv3 38
LU7 CBL -7.791 1.359 0.074 ETKDGv3 39
LU7 CBM -8.489 0.110 -0.497 ETKDGv3 40
LU7 CBN -9.705 0.480 -1.358 ETKDGv3 41
LU7 NBO -9.302 1.080 -2.633 ETKDGv3 42
LU7 CBP -10.241 1.552 -3.615 ETKDGv3 43
LU7 NBR -11.522 1.448 -3.436 ETKDGv3 44
LU7 NBQ -9.756 2.145 -4.820 ETKDGv3 45
LU7 HAH1 8.467 3.443 -2.583 ETKDGv3 46
LU7 HAE1 10.364 3.886 0.531 ETKDGv3 47
LU7 HAG1 12.669 1.760 2.284 ETKDGv3 48
LU7 HAA1 12.344 0.059 0.452 ETKDGv3 49
LU7 HAB1 11.263 -0.510 -1.620 ETKDGv3 50
LU7 HAI1 9.125 1.784 -3.733 ETKDGv3 51
LU7 HAI2 10.190 0.384 -3.701 ETKDGv3 52
LU7 H 7.038 1.628 -2.066 ETKDGv3 53
LU7 HA 5.906 -1.143 -2.463 ETKDGv3 54
LU7 HB2 7.098 -1.356 -0.332 ETKDGv3 55
LU7 HB3 5.337 -1.366 -0.045 ETKDGv3 56
LU7 HD23 8.491 0.479 0.533 ETKDGv3 57
LU7 HD22 7.736 1.734 1.576 ETKDGv3 58
LU7 HAT1 3.492 -1.333 -2.210 ETKDGv3 59
LU7 HAU1 2.064 1.168 -2.757 ETKDGv3 60
LU7 HAU2 1.342 -0.426 -2.406 ETKDGv3 61
LU7 HAV1 0.695 1.206 -0.654 ETKDGv3 62
LU7 HAV2 2.397 1.629 -0.357 ETKDGv3 63
LU7 HAW1 2.891 -0.639 0.515 ETKDGv3 64
LU7 HAW2 1.589 0.155 1.428 ETKDGv3 65
LU7 HAX2 1.115 -2.255 1.040 ETKDGv3 66
LU7 HAX1 1.249 -2.052 -0.714 ETKDGv3 67
LU7 HAY2 -0.753 -0.660 -0.811 ETKDGv3 68
LU7 HAY1 -1.146 -2.150 0.052 ETKDGv3 69
LU7 H1 -1.983 -0.016 1.046 ETKDGv3 70
LU7 HBA2 -1.368 -0.340 3.340 ETKDGv3 71
LU7 HBA1 -0.013 -1.373 2.851 ETKDGv3 72
LU7 HBB1 -1.583 -3.128 2.015 ETKDGv3 73
LU7 HBB2 -1.944 -2.669 3.693 ETKDGv3 74
LU7 HBC1 -3.459 -1.784 1.169 ETKDGv3 75
LU7 HBC2 -3.768 -1.068 2.777 ETKDGv3 76
LU7 H2 -5.055 -3.200 1.836 ETKDGv3 77
LU7 HBE2 -5.327 -4.139 4.078 ETKDGv3 78
LU7 HBE1 -4.039 -3.059 4.656 ETKDGv3 79
LU7 HBF1 -6.319 -2.246 5.194 ETKDGv3 80
LU7 HBF2 -5.432 -1.051 4.240 ETKDGv3 81
LU7 HBG1 -7.327 -3.079 2.872 ETKDGv3 82
LU7 HBG2 -7.993 -1.642 3.699 ETKDGv3 83
LU7 HBH1 -6.703 -1.688 1.094 ETKDGv3 84
LU7 HBK1 -6.058 2.017 1.173 ETKDGv3 85
LU7 HBS2 -4.614 0.301 0.506 ETKDGv3 86
LU7 H3 -5.317 0.999 -0.837 ETKDGv3 87
LU7 HBL2 -8.494 1.891 0.753 ETKDGv3 88
LU7 HBL1 -7.545 2.060 -0.752 ETKDGv3 89
LU7 HBM2 -7.780 -0.493 -1.104 ETKDGv3 90
LU7 HBM1 -8.846 -0.523 0.343 ETKDGv3 91
LU7 HBN2 -10.355 1.186 -0.797 ETKDGv3 92
LU7 HBN1 -10.286 -0.446 -1.564 ETKDGv3 93
LU7 HBO1 -8.285 1.166 -2.859 ETKDGv3 94
LU7 HBR2 -11.953 1.025 -2.586 ETKDGv3 95
LU7 HBQ1 -10.421 2.492 -5.546 ETKDGv3 96
LU7 H4 -8.730 2.241 -4.989 ETKDGv3 97
#