data_LVT
#
_chem_comp.id LVT
_chem_comp.name "octa-anionic calix[4]arene"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C36 H32 O24 S4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-09-17
_chem_comp.pdbx_modified_date 2020-01-10
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 976.885
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code LVT
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6SUY
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LVT C1 C1 C 0 1 N N N N N N -42.772 16.349 -6.986 0.478 3.906 -0.477 C1 LVT 1
LVT C2 C2 C 0 1 Y N N N N N -43.151 9.155 -4.707 3.412 -2.991 1.170 C2 LVT 2
LVT C3 C3 C 0 1 Y N N N N N -43.555 9.710 -3.482 2.475 -3.644 0.393 C3 LVT 3
LVT C4 C4 C 0 1 Y N N N N N -43.001 10.900 -2.993 1.194 -3.131 0.268 C4 LVT 4
LVT C5 C5 C 0 1 Y N N N N N -42.036 11.570 -3.773 0.854 -1.959 0.925 C5 LVT 5
LVT C6 C6 C 0 1 Y N N N N N -41.577 11.014 -4.989 1.795 -1.309 1.711 C6 LVT 6
LVT O1 O1 O 0 1 N N N N N N -43.405 14.402 -1.770 0.178 -1.450 -2.062 O1 LVT 7
LVT C7 C7 C 0 1 Y N N N N N -42.145 9.808 -5.441 3.071 -1.821 1.826 C7 LVT 8
LVT C10 C8 C 0 1 Y N N N N N -43.016 14.317 -8.490 2.791 3.409 0.344 C10 LVT 9
LVT C11 C9 C 0 1 Y N N N N N -42.793 12.970 -8.827 3.688 2.631 1.055 C11 LVT 10
LVT C12 C10 C 0 1 Y N N N N N -41.978 12.188 -7.993 3.246 1.507 1.729 C12 LVT 11
LVT C13 C11 C 0 1 Y N N N N N -41.409 12.705 -6.811 1.911 1.160 1.693 C13 LVT 12
LVT O3 O2 O 0 1 N N N N N N -48.547 10.512 -2.719 -4.584 -4.081 1.377 O3 LVT 13
LVT C21 C12 C 0 1 N N N N N N -38.691 15.568 -4.843 -2.469 1.308 1.934 C21 LVT 14
LVT C14 C13 C 0 1 Y N N N N N -41.663 14.060 -6.474 1.010 1.935 0.978 C14 LVT 15
LVT O2 O3 O 0 1 N N N N N N -49.054 12.349 -4.176 -5.735 -2.091 0.396 O2 LVT 16
LVT C16 C14 C 0 1 N N N N N N -40.592 11.759 -5.904 1.421 -0.050 2.446 C16 LVT 17
LVT C17 C15 C 0 1 N N N N N N -43.556 11.479 -1.689 0.190 -3.861 -0.583 C17 LVT 18
LVT C18 C16 C 0 1 N N N N N N -42.323 15.673 0.095 1.838 -1.387 -3.791 C18 LVT 19
LVT C19 C17 C 0 1 N N N N N N -43.298 14.610 -0.343 0.453 -1.841 -3.409 C19 LVT 20
LVT C20 C18 C 0 1 N N N N N N -42.708 17.783 -3.735 0.375 2.070 -3.507 C20 LVT 21
LVT C15 C19 C 0 1 Y N N N N N -42.443 14.885 -7.326 1.456 3.061 0.300 C15 LVT 22
LVT S2 S2 S 0 1 N N N N N N -43.711 7.698 -5.171 5.040 -3.647 1.325 1 LVT 23
LVT C22 C20 C 0 1 N N N N N N -41.303 18.028 -3.236 1.762 1.759 -4.007 C22 LVT 24
LVT C23 C21 C 0 1 N N N N N N -39.721 15.223 -5.885 -1.074 1.848 2.119 C23 LVT 25
LVT C24 C22 C 0 1 N N N N N N -40.151 12.175 -2.545 -1.316 -1.707 1.862 C24 LVT 26
LVT C25 C23 C 0 1 Y N N N N N -44.738 12.403 -2.023 -1.050 -3.037 -0.783 C25 LVT 27
LVT C26 C24 C 0 1 Y N N N N N -44.593 13.812 -2.139 -1.000 -1.867 -1.527 C26 LVT 28
LVT C27 C25 C 0 1 Y N N N N N -45.702 14.626 -2.441 -2.157 -1.124 -1.723 C27 LVT 29
LVT C28 C26 C 0 1 Y N N N N N -46.946 14.011 -2.671 -3.349 -1.549 -1.172 C28 LVT 30
LVT C29 C27 C 0 1 Y N N N N N -47.107 12.622 -2.599 -3.396 -2.712 -0.427 C29 LVT 31
LVT C30 C28 C 0 1 Y N N N N N -45.995 11.832 -2.272 -2.248 -3.453 -0.233 C30 LVT 32
LVT C31 C29 C 0 1 N N N N N N -39.551 13.135 -1.556 -2.684 -1.204 1.480 C31 LVT 33
LVT C42 C30 C 0 1 N N N N N N -45.593 16.144 -2.665 -2.107 0.142 -2.537 C42 LVT 34
LVT C43 C31 C 0 1 Y N N N N N -45.449 16.347 -4.181 -2.052 1.337 -1.625 C43 LVT 35
LVT C44 C32 C 0 1 Y N N N N N -44.195 16.334 -4.837 -0.862 2.039 -1.477 C44 LVT 36
LVT C45 C33 C 0 1 Y N N N N N -44.112 16.417 -6.239 -0.814 3.144 -0.641 C45 LVT 37
LVT C46 C34 C 0 1 Y N N N N N -45.299 16.456 -6.981 -1.945 3.547 0.039 C46 LVT 38
LVT C47 C35 C 0 1 Y N N N N N -46.555 16.471 -6.361 -3.127 2.846 -0.105 C47 LVT 39
LVT C48 C36 C 0 1 Y N N N N N -46.623 16.400 -4.960 -3.178 1.740 -0.935 C48 LVT 40
LVT O17 O4 O 0 1 N N N N N N -40.967 14.636 -5.431 -0.305 1.593 0.942 O17 LVT 41
LVT O19 O5 O 0 1 N N N N N N -41.842 16.453 -0.755 2.559 -0.883 -2.962 O19 LVT 42
LVT O20 O6 O 0 1 N N N N N N -42.037 15.722 1.313 2.272 -1.543 -5.051 O20 LVT 43
LVT O21 O7 O 0 1 N N N N N N -43.030 16.423 -4.116 0.251 1.643 -2.149 O21 LVT 44
LVT O22 O8 O 0 1 N N N N N N -37.917 16.521 -5.083 -2.859 1.006 0.831 O22 LVT 45
LVT O23 O9 O 0 1 N N N N N N -38.630 14.895 -3.795 -3.279 1.163 2.995 O23 LVT 46
LVT O24 O10 O 0 1 N N N N N N -40.496 17.077 -3.161 2.573 1.258 -3.265 O24 LVT 47
LVT O25 O11 O 0 1 N N N N N N -44.288 13.278 -10.880 5.634 3.863 -0.054 O25 LVT 48
LVT O26 O12 O 0 1 N N N N N N -44.100 11.081 -9.926 5.588 3.991 2.299 O26 LVT 49
LVT O27 O13 O 0 1 N N N N N N -42.249 12.034 -11.090 6.108 1.879 1.391 O27 LVT 50
LVT O28 O14 O 0 1 N N N N N N -41.005 19.199 -2.899 2.096 2.039 -5.277 O28 LVT 51
LVT O30 O15 O 0 1 N N N N N N -48.679 15.385 -7.268 -4.115 4.101 1.892 O30 LVT 52
LVT O31 O16 O 0 1 N N N N N N -48.704 17.700 -6.586 -5.308 4.347 -0.126 O31 LVT 53
LVT O32 O17 O 0 1 N N N N N N -47.525 17.036 -8.604 -5.403 2.215 0.875 O32 LVT 54
LVT O33 O18 O 0 1 N N N N N N -40.100 14.241 -1.378 -2.860 -0.694 0.399 O33 LVT 55
LVT O34 O19 O 0 1 N N N N N N -38.501 12.783 -0.969 -3.707 -1.321 2.342 O34 LVT 56
LVT O35 O20 O 0 1 N N N N N N -44.589 7.174 -4.099 5.878 -3.043 0.207 O35 LVT 57
LVT O36 O21 O 0 1 N N N N N N -44.427 7.818 -6.446 5.565 -3.134 2.542 O36 LVT 58
LVT O37 O22 O 0 1 N N N N N N -42.538 6.814 -5.271 4.941 -5.037 1.046 O37 LVT 59
LVT O4 O23 O 0 1 N N N N N N -49.504 12.500 -1.808 -5.597 -4.146 -0.751 O4 LVT 60
LVT O5 O24 O 0 1 N N N N N N -41.356 12.630 -3.214 -0.398 -1.447 0.798 O5 LVT 61
LVT S1 S1 S 0 1 N N N N N N -48.584 11.988 -2.843 -4.920 -3.249 0.275 S1 LVT 62
LVT S24 S3 S 0 1 N N N N N N -43.383 12.337 -10.208 5.393 3.072 1.102 S24 LVT 63
LVT S29 S4 S 0 1 N N N N N N -47.903 16.638 -7.234 -4.569 3.361 0.767 S29 LVT 64
LVT H1 H1 H 0 1 N N N N N N -41.977 16.764 -6.350 0.287 4.833 0.064 H1 LVT 65
LVT H2 H2 H 0 1 N N N N N N -42.841 16.934 -7.915 0.892 4.136 -1.458 H2 LVT 66
LVT H3 H3 H 0 1 N N N N N N -44.313 9.206 -2.901 2.741 -4.557 -0.118 H3 LVT 67
LVT H4 H4 H 0 1 N N N N N N -41.802 9.376 -6.369 3.805 -1.309 2.431 H4 LVT 68
LVT H5 H5 H 0 1 N N N N N N -43.635 14.929 -9.130 3.136 4.290 -0.176 H5 LVT 69
LVT H6 H6 H 0 1 N N N N N N -41.781 11.161 -8.265 3.947 0.901 2.283 H6 LVT 70
LVT H7 H7 H 0 1 N N N N N N -40.036 11.038 -6.521 0.337 0.002 2.545 H7 LVT 71
LVT H8 H8 H 0 1 N N N N N N -39.885 12.343 -5.296 1.872 -0.064 3.438 H8 LVT 72
LVT H9 H9 H 0 1 N N N N N N -43.898 10.662 -1.037 0.635 -4.080 -1.553 H9 LVT 73
LVT H10 H10 H 0 1 N N N N N N -42.771 12.053 -1.175 -0.079 -4.797 -0.094 H10 LVT 74
LVT H11 H11 H 0 1 N N N N N N -44.293 14.890 0.033 0.389 -2.925 -3.493 H11 LVT 75
LVT H12 H12 H 0 1 N N N N N N -42.988 13.659 0.114 -0.277 -1.381 -4.077 H12 LVT 76
LVT H13 H13 H 0 1 N N N N N N -42.867 18.423 -4.615 0.198 3.144 -3.568 H13 LVT 77
LVT H14 H14 H 0 1 N N N N N N -43.403 18.080 -2.936 -0.359 1.546 -4.121 H14 LVT 78
LVT H15 H15 H 0 1 N N N N N N -39.257 14.510 -6.583 -1.121 2.922 2.297 H15 LVT 79
LVT H16 H16 H 0 1 N N N N N N -39.971 16.151 -6.420 -0.605 1.358 2.972 H16 LVT 80
LVT H17 H17 H 0 1 N N N N N N -40.393 11.245 -2.009 -0.980 -1.197 2.765 H17 LVT 81
LVT H18 H18 H 0 1 N N N N N N -39.394 11.968 -3.316 -1.363 -2.781 2.047 H18 LVT 82
LVT H19 H19 H 0 1 N N N N N N -47.800 14.627 -2.910 -4.248 -0.970 -1.322 H19 LVT 83
LVT H20 H20 H 0 1 N N N N N N -46.109 10.760 -2.211 -2.285 -4.360 0.351 H20 LVT 84
LVT H21 H21 H 0 1 N N N N N N -44.712 16.544 -2.142 -1.222 0.130 -3.172 H21 LVT 85
LVT H22 H22 H 0 1 N N N N N N -46.498 16.649 -2.297 -2.998 0.205 -3.162 H22 LVT 86
LVT H23 H23 H 0 1 N N N N N N -45.245 16.475 -8.059 -1.906 4.411 0.686 H23 LVT 87
LVT H24 H24 H 0 1 N N N N N N -47.587 16.386 -4.473 -4.101 1.191 -1.043 H24 LVT 88
LVT H25 H25 H 0 1 N N N N N N -41.418 16.426 1.465 3.168 -1.237 -5.249 H25 LVT 89
LVT H26 H26 H 0 1 N N N N N N -37.927 15.224 -3.247 -4.164 0.813 2.827 H26 LVT 90
LVT H27 H27 H 0 1 N N N N N N -40.105 19.222 -2.595 2.998 1.822 -5.551 H27 LVT 91
LVT H28 H28 H 0 1 N N N N N N -38.212 13.479 -0.391 -4.565 -0.983 2.052 H28 LVT 92
LVT H29 H29 H 0 1 N N N N N N -43.670 10.363 -10.375 6.498 4.295 2.418 H29 LVT 93
LVT H30 H30 H 0 1 N N N N N N -49.548 17.348 -6.330 -6.123 4.695 0.262 H30 LVT 94
LVT H31 H31 H 0 1 N N N N N N -44.199 6.394 -3.723 6.798 -3.339 0.201 H31 LVT 95
LVT H32 H32 H 0 1 N N N N N N -49.855 11.773 -1.308 -6.451 -4.498 -0.463 H32 LVT 96
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LVT O27 S24 DOUB N N 1
LVT O25 S24 DOUB N N 2
LVT S24 O26 SING N N 3
LVT S24 C11 SING N N 4
LVT C11 C10 DOUB Y N 5
LVT C11 C12 SING Y N 6
LVT O32 S29 DOUB N N 7
LVT C10 C15 SING Y N 8
LVT C12 C13 DOUB Y N 9
LVT C15 C1 SING N N 10
LVT C15 C14 DOUB Y N 11
LVT O30 S29 DOUB N N 12
LVT S29 O31 SING N N 13
LVT S29 C47 SING N N 14
LVT C1 C45 SING N N 15
LVT C46 C47 DOUB Y N 16
LVT C46 C45 SING Y N 17
LVT C13 C14 SING Y N 18
LVT C13 C16 SING N N 19
LVT C14 O17 SING N N 20
LVT O36 S2 DOUB N N 21
LVT C47 C48 SING Y N 22
LVT C45 C44 DOUB Y N 23
LVT C16 C6 SING N N 24
LVT C23 O17 SING N N 25
LVT C23 C21 SING N N 26
LVT C7 C6 DOUB Y N 27
LVT C7 C2 SING Y N 28
LVT O37 S2 DOUB N N 29
LVT S2 C2 SING N N 30
LVT S2 O35 SING N N 31
LVT O22 C21 DOUB N N 32
LVT C6 C5 SING Y N 33
LVT C48 C43 DOUB Y N 34
LVT C21 O23 SING N N 35
LVT C44 C43 SING Y N 36
LVT C44 O21 SING N N 37
LVT C2 C3 DOUB Y N 38
LVT C43 C42 SING N N 39
LVT O2 S1 DOUB N N 40
LVT O21 C20 SING N N 41
LVT C5 O5 SING N N 42
LVT C5 C4 DOUB Y N 43
LVT C20 C22 SING N N 44
LVT C3 C4 SING Y N 45
LVT C22 O24 DOUB N N 46
LVT C22 O28 SING N N 47
LVT O5 C24 SING N N 48
LVT C4 C17 SING N N 49
LVT S1 O3 DOUB N N 50
LVT S1 C29 SING N N 51
LVT S1 O4 SING N N 52
LVT C28 C29 DOUB Y N 53
LVT C28 C27 SING Y N 54
LVT C42 C27 SING N N 55
LVT C29 C30 SING Y N 56
LVT C24 C31 SING N N 57
LVT C27 C26 DOUB Y N 58
LVT C30 C25 DOUB Y N 59
LVT C26 C25 SING Y N 60
LVT C26 O1 SING N N 61
LVT C25 C17 SING N N 62
LVT O1 C19 SING N N 63
LVT C31 O33 DOUB N N 64
LVT C31 O34 SING N N 65
LVT O19 C18 DOUB N N 66
LVT C19 C18 SING N N 67
LVT C18 O20 SING N N 68
LVT C1 H1 SING N N 69
LVT C1 H2 SING N N 70
LVT C3 H3 SING N N 71
LVT C7 H4 SING N N 72
LVT C10 H5 SING N N 73
LVT C12 H6 SING N N 74
LVT C16 H7 SING N N 75
LVT C16 H8 SING N N 76
LVT C17 H9 SING N N 77
LVT C17 H10 SING N N 78
LVT C19 H11 SING N N 79
LVT C19 H12 SING N N 80
LVT C20 H13 SING N N 81
LVT C20 H14 SING N N 82
LVT C23 H15 SING N N 83
LVT C23 H16 SING N N 84
LVT C24 H17 SING N N 85
LVT C24 H18 SING N N 86
LVT C28 H19 SING N N 87
LVT C30 H20 SING N N 88
LVT C42 H21 SING N N 89
LVT C42 H22 SING N N 90
LVT C46 H23 SING N N 91
LVT C48 H24 SING N N 92
LVT O20 H25 SING N N 93
LVT O23 H26 SING N N 94
LVT O28 H27 SING N N 95
LVT O34 H28 SING N N 96
LVT O26 H29 SING N N 97
LVT O31 H30 SING N N 98
LVT O35 H31 SING N N 99
LVT O4 H32 SING N N 100
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LVT InChI InChI 1.03 InChI=1S/C36H32O24S4/c37-29(38)13-57-33-17-1-18-6-26(62(48,49)50)8-20(34(18)58-14-30(39)40)3-22-10-28(64(54,55)56)12-24(36(22)60-16-32(43)44)4-23-11-27(63(51,52)53)9-21(35(23)59-15-31(41)42)2-19(33)7-25(5-17)61(45,46)47/h5-12H,1-4,13-16H2,(H,37,38)(H,39,40)(H,41,42)(H,43,44)(H,45,46,47)(H,48,49,50)(H,51,52,53)(H,54,55,56)
LVT InChIKey InChI 1.03 JUMSFKUQLZLREY-UHFFFAOYSA-N
LVT SMILES_CANONICAL CACTVS 3.385 OC(=O)COc1c2Cc3cc(cc(Cc4cc(cc(Cc5cc(cc(Cc1cc(c2)[S](O)(=O)=O)c5OCC(O)=O)[S](O)(=O)=O)c4OCC(O)=O)[S](O)(=O)=O)c3OCC(O)=O)[S](O)(=O)=O
LVT SMILES CACTVS 3.385 OC(=O)COc1c2Cc3cc(cc(Cc4cc(cc(Cc5cc(cc(Cc1cc(c2)[S](O)(=O)=O)c5OCC(O)=O)[S](O)(=O)=O)c4OCC(O)=O)[S](O)(=O)=O)c3OCC(O)=O)[S](O)(=O)=O
LVT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1c(cc2c(c1Cc3cc(cc(c3OCC(=O)O)Cc4cc(cc(c4OCC(=O)O)Cc5cc(cc(c5OCC(=O)O)C2)S(=O)(=O)O)S(=O)(=O)O)S(=O)(=O)O)OCC(=O)O)S(=O)(=O)O
LVT SMILES "OpenEye OEToolkits" 2.0.7 c1c(cc2c(c1Cc3cc(cc(c3OCC(=O)O)Cc4cc(cc(c4OCC(=O)O)Cc5cc(cc(c5OCC(=O)O)C2)S(=O)(=O)O)S(=O)(=O)O)S(=O)(=O)O)OCC(=O)O)S(=O)(=O)O
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LVT 'Create component' 2019-09-17 PDBE
LVT 'Modify atom id' 2020-01-06 PDBE
LVT 'Initial release' 2020-01-15 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
LVT C1 C 8.669 2.788 1
LVT C2 C 16.178 0.017 2
LVT C3 C 15.427 -1.285 3
LVT C4 C 13.924 -1.285 4
LVT C5 C 13.173 0.017 5
LVT C6 C 13.874 1.286 6
LVT O1 O 10.363 -1.654 7
LVT C7 C 15.427 1.318 8
LVT C10 C 9.970 5.042 9
LVT C11 C 11.272 5.794 10
LVT C12 C 12.573 5.042 11
LVT C13 C 12.573 3.540 12
LVT O3 O 9.805 -7.294 13
LVT C21 C 14.610 3.301 14
LVT C14 C 11.272 2.788 15
LVT O2 O 11.305 -8.794 16
LVT C16 C 13.874 2.788 17
LVT C17 C 13.908 -2.788 18
LVT C18 C 7.958 -3.270 19
LVT C19 C 8.944 -2.139 20
LVT C20 C 9.470 2.615 21
LVT C15 C 9.970 3.540 22
LVT S2 S 17.678 0.017 23
LVT C22 C 8.321 3.579 24
LVT C23 C 13.645 2.152 25
LVT C24 C 13.222 -2.581 26
LVT C25 C 12.606 -3.540 27
LVT C26 C 11.305 -2.822 28
LVT C27 C 10.004 -3.540 29
LVT C28 C 10.004 -5.042 30
LVT C29 C 11.305 -5.794 31
LVT C30 C 12.606 -5.042 32
LVT C31 C 14.389 -3.523 33
LVT C42 C 8.702 -2.788 34
LVT C43 C 8.719 -1.285 35
LVT C44 C 9.470 0.017 36
LVT C45 C 8.669 1.286 37
LVT C46 C 7.216 1.318 38
LVT C47 C 6.465 0.017 39
LVT C48 C 7.216 -1.285 40
LVT O17 O 12.236 1.639 41
LVT O19 O 6.486 -2.980 42
LVT O20 O 8.443 -4.689 43
LVT O21 O 10.220 1.316 44
LVT O22 O 16.087 3.041 45
LVT O23 O 14.097 4.711 46
LVT O24 O 6.912 3.066 47
LVT O25 O 9.772 7.294 48
LVT O26 O 12.772 7.294 49
LVT O27 O 11.272 8.794 50
LVT O28 O 8.582 5.056 51
LVT O30 O 4.965 -1.483 52
LVT O31 O 4.965 1.517 53
LVT O32 O 3.465 0.017 54
LVT O33 O 14.156 -5.005 55
LVT O34 O 15.788 -2.984 56
LVT O35 O 17.678 -1.483 57
LVT O36 O 19.178 0.017 58
LVT O37 O 17.678 1.517 59
LVT O4 O 12.805 -7.294 60
LVT O5 O 12.447 -1.296 61
LVT S1 S 11.305 -7.294 62
LVT S24 S 11.272 7.294 63
LVT S29 S 4.965 0.017 64
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
LVT O27 S24 DOUBLE NONE 1
LVT O25 S24 DOUBLE NONE 2
LVT S24 O26 SINGLE NONE 3
LVT S24 C11 SINGLE NONE 4
LVT C11 C10 DOUBLE NONE 5
LVT C11 C12 SINGLE NONE 6
LVT O32 S29 DOUBLE NONE 7
LVT C10 C15 SINGLE NONE 8
LVT C12 C13 DOUBLE NONE 9
LVT C15 C1 SINGLE NONE 10
LVT C15 C14 DOUBLE NONE 11
LVT O30 S29 DOUBLE NONE 12
LVT S29 O31 SINGLE NONE 13
LVT S29 C47 SINGLE NONE 14
LVT C1 C45 SINGLE NONE 15
LVT C46 C47 SINGLE NONE 16
LVT C46 C45 DOUBLE NONE 17
LVT C13 C14 SINGLE NONE 18
LVT C13 C16 SINGLE NONE 19
LVT C14 O17 SINGLE NONE 20
LVT O36 S2 DOUBLE NONE 21
LVT C47 C48 DOUBLE NONE 22
LVT C45 C44 SINGLE NONE 23
LVT C16 C6 SINGLE NONE 24
LVT C23 O17 SINGLE NONE 25
LVT C23 C21 SINGLE NONE 26
LVT C7 C6 DOUBLE NONE 27
LVT C7 C2 SINGLE NONE 28
LVT O37 S2 DOUBLE NONE 29
LVT S2 C2 SINGLE NONE 30
LVT S2 O35 SINGLE NONE 31
LVT O22 C21 DOUBLE NONE 32
LVT C6 C5 SINGLE NONE 33
LVT C48 C43 SINGLE NONE 34
LVT C21 O23 SINGLE NONE 35
LVT C44 C43 DOUBLE NONE 36
LVT C44 O21 SINGLE NONE 37
LVT C2 C3 DOUBLE NONE 38
LVT C43 C42 SINGLE NONE 39
LVT O2 S1 DOUBLE NONE 40
LVT O21 C20 SINGLE NONE 41
LVT C5 O5 SINGLE NONE 42
LVT C5 C4 DOUBLE NONE 43
LVT C20 C22 SINGLE NONE 44
LVT C3 C4 SINGLE NONE 45
LVT C22 O24 DOUBLE NONE 46
LVT C22 O28 SINGLE NONE 47
LVT O5 C24 SINGLE NONE 48
LVT C4 C17 SINGLE NONE 49
LVT S1 O3 DOUBLE NONE 50
LVT S1 C29 SINGLE NONE 51
LVT S1 O4 SINGLE NONE 52
LVT C28 C29 SINGLE NONE 53
LVT C28 C27 DOUBLE NONE 54
LVT C42 C27 SINGLE NONE 55
LVT C29 C30 DOUBLE NONE 56
LVT C24 C31 SINGLE NONE 57
LVT C27 C26 SINGLE NONE 58
LVT C30 C25 SINGLE NONE 59
LVT C26 C25 DOUBLE NONE 60
LVT C26 O1 SINGLE NONE 61
LVT C25 C17 SINGLE NONE 62
LVT O1 C19 SINGLE NONE 63
LVT C31 O33 DOUBLE NONE 64
LVT C31 O34 SINGLE NONE 65
LVT O19 C18 DOUBLE NONE 66
LVT C19 C18 SINGLE NONE 67
LVT C18 O20 SINGLE NONE 68
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
LVT MurckoScaffold S1 scaffold c1cc2cc(c1)Cc1cccc(c1)Cc1cccc(c1)Cc1cccc(c1)C2 InChI=1S/C28H24/c1-5-21-13-22(6-1)18-24-8-3-10-26(15-24)20-28-12-4-11-27(16-28)19-25-9-2-7-23(14-25)17-21/h1-16H,17-20H2 GQPLZGRPYWLBPW-UHFFFAOYSA-N
LVT phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
LVT C1 S1 1
LVT C2 S1 1
LVT C3 S1 1
LVT C4 S1 1
LVT C5 S1 1
LVT C6 S1 1
LVT C7 S1 1
LVT C10 S1 1
LVT C11 S1 1
LVT C12 S1 1
LVT C13 S1 1
LVT C14 S1 1
LVT C16 S1 1
LVT C17 S1 1
LVT C15 S1 1
LVT C25 S1 1
LVT C26 S1 1
LVT C27 S1 1
LVT C28 S1 1
LVT C29 S1 1
LVT C30 S1 1
LVT C42 S1 1
LVT C43 S1 1
LVT C44 S1 1
LVT C45 S1 1
LVT C46 S1 1
LVT C47 S1 1
LVT C48 S1 1
LVT C2 F1 1
LVT C7 F1 1
LVT C6 F1 1
LVT C5 F1 1
LVT C4 F1 1
LVT C3 F1 1
LVT C10 F1 2
LVT C11 F1 2
LVT C12 F1 2
LVT C13 F1 2
LVT C14 F1 2
LVT C15 F1 2
LVT C25 F1 3
LVT C30 F1 3
LVT C29 F1 3
LVT C28 F1 3
LVT C27 F1 3
LVT C26 F1 3
LVT C43 F1 4
LVT C48 F1 4
LVT C47 F1 4
LVT C46 F1 4
LVT C45 F1 4
LVT C44 F1 4
#
_pdbe_chem_comp_rdkit_properties.comp_id LVT
_pdbe_chem_comp_rdkit_properties.exactmw 976.017
_pdbe_chem_comp_rdkit_properties.amw 976.896
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 24
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 8
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 20
_pdbe_chem_comp_rdkit_properties.NumHBD 8
_pdbe_chem_comp_rdkit_properties.NumHBA 24
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 64
_pdbe_chem_comp_rdkit_properties.NumAtoms 96
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 28
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.222
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 8
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 406.420
_pdbe_chem_comp_rdkit_properties.tpsa 403.600
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.516
_pdbe_chem_comp_rdkit_properties.CrippenMR 206.486
_pdbe_chem_comp_rdkit_properties.chi0v 32.697
_pdbe_chem_comp_rdkit_properties.chi1v 20.715
_pdbe_chem_comp_rdkit_properties.chi2v 9.487
_pdbe_chem_comp_rdkit_properties.chi3v 9.487
_pdbe_chem_comp_rdkit_properties.chi4v 6.287
_pdbe_chem_comp_rdkit_properties.chi0n 61.431
_pdbe_chem_comp_rdkit_properties.chi1n 30.348
_pdbe_chem_comp_rdkit_properties.chi2n 6.670
_pdbe_chem_comp_rdkit_properties.chi3n 6.670
_pdbe_chem_comp_rdkit_properties.chi4n 4.471
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -6.400
_pdbe_chem_comp_rdkit_properties.kappa1 21.062
_pdbe_chem_comp_rdkit_properties.kappa2 18.368
_pdbe_chem_comp_rdkit_properties.kappa3 11.985
_pdbe_chem_comp_rdkit_properties.Phi 6.045
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
LVT UniChem PDBe LVT
LVT UniChem PubChem 100972959
LVT UniChem Nikkaji J861.115G
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
LVT C1 -2.386 2.767 0.246 ETKDGv3 1
LVT C2 -0.735 -3.036 -2.071 ETKDGv3 2
LVT C3 0.519 -3.059 -1.605 ETKDGv3 3
LVT C4 0.795 -2.866 -0.161 ETKDGv3 4
LVT C5 -0.240 -2.720 0.699 ETKDGv3 5
LVT C6 -1.631 -2.617 0.172 ETKDGv3 6
LVT O1 1.803 -0.143 1.263 ETKDGv3 7
LVT C7 -1.856 -2.791 -1.142 ETKDGv3 8
LVT C10 -2.232 1.771 2.617 ETKDGv3 9
LVT C11 -2.198 0.729 3.455 ETKDGv3 10
LVT C12 -2.391 -0.639 2.931 ETKDGv3 11
LVT C13 -2.612 -0.847 1.620 ETKDGv3 12
LVT O3 6.152 -2.107 -3.395 ETKDGv3 13
LVT C21 -4.053 -0.293 -2.698 ETKDGv3 14
LVT C14 -2.654 0.320 0.691 ETKDGv3 15
LVT O2 6.251 0.317 -3.671 ETKDGv3 16
LVT C16 -2.771 -2.255 1.094 ETKDGv3 17
LVT C17 2.237 -2.758 0.281 ETKDGv3 18
LVT C18 2.144 -0.629 3.572 ETKDGv3 19
LVT C19 2.298 0.386 2.491 ETKDGv3 20
LVT C20 0.825 4.145 1.884 ETKDGv3 21
LVT C15 -2.451 1.570 1.165 ETKDGv3 22
LVT S2 -1.034 -3.245 -3.794 ETKDGv3 23
LVT C22 -0.224 5.206 1.808 ETKDGv3 24
LVT C23 -4.153 0.073 -1.254 ETKDGv3 25
LVT C24 0.295 -3.801 2.859 ETKDGv3 26
LVT C25 2.876 -1.538 -0.335 ETKDGv3 27
LVT C26 2.612 -0.296 0.129 ETKDGv3 28
LVT C27 3.164 0.897 -0.585 ETKDGv3 29
LVT C28 3.981 0.713 -1.638 ETKDGv3 30
LVT C29 4.309 -0.646 -2.112 ETKDGv3 31
LVT C30 3.766 -1.709 -1.507 ETKDGv3 32
LVT C31 -0.930 -4.614 3.118 ETKDGv3 33
LVT C42 2.673 2.290 -0.264 ETKDGv3 34
LVT C43 1.284 2.497 -0.828 ETKDGv3 35
LVT C44 0.203 2.713 -0.041 ETKDGv3 36
LVT C45 -1.163 2.706 -0.640 ETKDGv3 37
LVT C46 -1.303 2.600 -1.972 ETKDGv3 38
LVT C47 -0.119 2.465 -2.843 ETKDGv3 39
LVT C48 1.101 2.405 -2.298 ETKDGv3 40
LVT O17 -2.853 0.109 -0.676 ETKDGv3 41
LVT O19 3.050 -1.481 3.772 ETKDGv3 42
LVT O20 0.983 -0.654 4.336 ETKDGv3 43
LVT O21 0.336 2.922 1.336 ETKDGv3 44
LVT O22 -5.044 -0.805 -3.285 ETKDGv3 45
LVT O23 -2.886 -0.031 -3.408 ETKDGv3 46
LVT O24 -0.988 5.412 2.788 ETKDGv3 47
LVT O25 -1.872 -0.314 5.900 ETKDGv3 48
LVT O26 -0.457 1.795 5.395 ETKDGv3 49
LVT O27 -3.042 1.826 5.741 ETKDGv3 50
LVT O28 -0.386 5.934 0.634 ETKDGv3 51
LVT O30 0.214 1.037 -5.078 ETKDGv3 52
LVT O31 0.550 3.612 -5.324 ETKDGv3 53
LVT O32 -1.752 2.485 -4.967 ETKDGv3 54
LVT O33 -1.259 -5.532 2.321 ETKDGv3 55
LVT O34 -1.735 -4.321 4.215 ETKDGv3 56
LVT O35 -0.417 -1.929 -4.639 ETKDGv3 57
LVT O36 -2.511 -3.340 -4.051 ETKDGv3 58
LVT O37 -0.378 -4.510 -4.272 ETKDGv3 59
LVT O4 4.360 -0.967 -4.905 ETKDGv3 60
LVT O5 -0.029 -2.649 2.081 ETKDGv3 61
LVT S1 5.326 -0.859 -3.533 ETKDGv3 62
LVT S24 -1.922 1.000 5.173 ETKDGv3 63
LVT S29 -0.303 2.361 -4.591 ETKDGv3 64
LVT H1 -2.353 3.707 0.833 ETKDGv3 65
LVT H2 -3.321 2.825 -0.350 ETKDGv3 66
LVT H3 1.344 -3.216 -2.288 ETKDGv3 67
LVT H4 -2.861 -2.722 -1.537 ETKDGv3 68
LVT H5 -2.090 2.774 3.000 ETKDGv3 69
LVT H6 -2.343 -1.477 3.616 ETKDGv3 70
LVT H7 -2.812 -2.993 1.921 ETKDGv3 71
LVT H8 -3.750 -2.338 0.578 ETKDGv3 72
LVT H9 2.774 -3.678 -0.035 ETKDGv3 73
LVT H10 2.347 -2.703 1.382 ETKDGv3 74
LVT H11 1.715 1.288 2.764 ETKDGv3 75
LVT H12 3.370 0.674 2.403 ETKDGv3 76
LVT H13 1.102 3.974 2.946 ETKDGv3 77
LVT H14 1.732 4.487 1.344 ETKDGv3 78
LVT H15 -4.636 1.068 -1.166 ETKDGv3 79
LVT H16 -4.783 -0.674 -0.726 ETKDGv3 80
LVT H17 0.720 -3.472 3.829 ETKDGv3 81
LVT H18 1.060 -4.423 2.346 ETKDGv3 82
LVT H19 4.358 1.563 -2.193 ETKDGv3 83
LVT H20 3.971 -2.705 -1.879 ETKDGv3 84
LVT H21 3.348 3.059 -0.699 ETKDGv3 85
LVT H22 2.717 2.443 0.829 ETKDGv3 86
LVT H23 -2.290 2.593 -2.418 ETKDGv3 87
LVT H24 1.969 2.292 -2.935 ETKDGv3 88
LVT H25 0.862 -1.332 5.079 ETKDGv3 89
LVT H26 -2.813 -0.262 -4.392 ETKDGv3 90
LVT H27 -1.108 6.641 0.556 ETKDGv3 91
LVT H28 -2.582 -4.847 4.391 ETKDGv3 92
LVT H29 -0.598 2.706 5.032 ETKDGv3 93
LVT H30 1.504 3.358 -5.239 ETKDGv3 94
LVT H31 0.559 -1.951 -4.474 ETKDGv3 95
LVT H32 3.745 -1.722 -4.726 ETKDGv3 96
#