data_LZ1
#
_chem_comp.id LZ1
_chem_comp.name 1H-indazole
_chem_comp.type non-polymer
_chem_comp.pdbx_type ?
_chem_comp.formula "C7 H6 N2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-05-13
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 118.136
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code LZ1
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2VTA
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
LZ1 C1 C1 C 0 1 Y N N N N N 26.647 4.430 64.263 26.647 4.430 64.263 C1 LZ1 1
LZ1 C2 C2 C 0 1 Y N N N N N 27.329 5.650 64.375 27.329 5.650 64.375 C2 LZ1 2
LZ1 C3 C3 C 0 1 Y N N N N N 26.864 6.738 63.640 26.864 6.738 63.640 C3 LZ1 3
LZ1 C4 C4 C 0 1 Y N N N N N 25.762 6.612 62.813 25.762 6.612 62.813 C4 LZ1 4
LZ1 C5 C5 C 0 1 Y N N N N N 25.103 5.401 62.706 25.103 5.401 62.706 C5 LZ1 5
LZ1 C6 C6 C 0 1 Y N N N N N 25.545 4.309 63.426 25.545 4.309 63.426 C6 LZ1 6
LZ1 N N N 0 1 Y N N N N N 27.308 3.547 65.078 27.308 3.547 65.078 N LZ1 7
LZ1 C9 C9 C 0 1 Y N N N N N 28.384 5.413 65.290 28.384 5.413 65.290 C9 LZ1 8
LZ1 N2 N2 N 0 1 Y N N N N N 28.364 4.137 65.698 28.364 4.137 65.698 N2 LZ1 9
LZ1 H6 H6 H 0 1 N N N N N N 25.034 3.361 63.339 25.034 3.361 63.339 H6 LZ1 10
LZ1 H H H 0 1 N N N N N N 27.046 2.590 65.201 27.046 2.590 65.201 H LZ1 11
LZ1 H3 H3 H 0 1 N N N N N N 27.369 7.690 63.716 27.369 7.690 63.716 H3 LZ1 12
LZ1 H9 H9 H 0 1 N N N N N N 29.101 6.154 65.612 29.101 6.154 65.612 H9 LZ1 13
LZ1 H4 H4 H 0 1 N N N N N N 25.415 7.464 62.248 25.414 7.464 62.248 H4 LZ1 14
LZ1 H5 H5 H 0 1 N N N N N N 24.243 5.309 62.059 24.243 5.309 62.059 H5 LZ1 15
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
LZ1 C1 C2 SING Y N 1
LZ1 C1 C6 DOUB Y N 2
LZ1 C1 N SING Y N 3
LZ1 C2 C3 DOUB Y N 4
LZ1 C2 C9 SING Y N 5
LZ1 C3 C4 SING Y N 6
LZ1 C4 C5 DOUB Y N 7
LZ1 C5 C6 SING Y N 8
LZ1 N N2 SING Y N 9
LZ1 C9 N2 DOUB Y N 10
LZ1 C6 H6 SING N N 11
LZ1 N H SING N N 12
LZ1 C3 H3 SING N N 13
LZ1 C9 H9 SING N N 14
LZ1 C4 H4 SING N N 15
LZ1 C5 H5 SING N N 16
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
LZ1 SMILES ACDLabs 10.04 n2cc1ccccc1n2
LZ1 SMILES_CANONICAL CACTVS 3.341 "[nH]1ncc2ccccc12"
LZ1 SMILES CACTVS 3.341 "[nH]1ncc2ccccc12"
LZ1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)cn[nH]2
LZ1 SMILES "OpenEye OEToolkits" 1.5.0 c1ccc2c(c1)cn[nH]2
LZ1 InChI InChI 1.03 InChI=1S/C7H6N2/c1-2-4-7-6(3-1)5-8-9-7/h1-5H,(H,8,9)
LZ1 InChIKey InChI 1.03 BAXOFTOLAUCFNW-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
LZ1 "SYSTEMATIC NAME" ACDLabs 10.04 1H-indazole
LZ1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 1H-indazole
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
LZ1 'Create component' 2008-05-13 EBI
LZ1 'Modify aromatic_flag' 2011-06-04 RCSB
LZ1 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
LZ1 C1 C 5.598 -0.455 1
LZ1 C2 C 5.598 1.046 2
LZ1 C3 C 4.299 1.796 3
LZ1 C4 C 3.000 1.046 4
LZ1 C5 C 3.000 -0.455 5
LZ1 C6 C 4.299 -1.204 6
LZ1 N N 7.018 -0.912 7
LZ1 C9 C 7.018 1.503 8
LZ1 N2 N 7.893 0.295 9
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
LZ1 C1 C2 SINGLE NONE 1
LZ1 C1 C6 DOUBLE NONE 2
LZ1 C1 N SINGLE NONE 3
LZ1 C2 C3 DOUBLE NONE 4
LZ1 C2 C9 SINGLE NONE 5
LZ1 C3 C4 SINGLE NONE 6
LZ1 C4 C5 DOUBLE NONE 7
LZ1 C5 C6 SINGLE NONE 8
LZ1 N N2 SINGLE NONE 9
LZ1 C9 N2 DOUBLE NONE 10
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
LZ1 MurckoScaffold S1 scaffold 'c1ccc2[nH]ncc2c1' InChI=1S/C7H6N2/c1-2-4-7-6(3-1)5-8-9-7/h1-5H,(H,8,9) BAXOFTOLAUCFNW-UHFFFAOYSA-N
LZ1 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
LZ1 pyrazole F2 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
LZ1 C1 S1 1
LZ1 C2 S1 1
LZ1 C3 S1 1
LZ1 C4 S1 1
LZ1 C5 S1 1
LZ1 C6 S1 1
LZ1 N S1 1
LZ1 C9 S1 1
LZ1 N2 S1 1
LZ1 C1 F1 1
LZ1 C2 F1 1
LZ1 C3 F1 1
LZ1 C4 F1 1
LZ1 C5 F1 1
LZ1 C6 F1 1
LZ1 C1 F2 1
LZ1 C2 F2 1
LZ1 C9 F2 1
LZ1 N2 F2 1
LZ1 N F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id LZ1
_pdbe_chem_comp_rdkit_properties.exactmw 118.053
_pdbe_chem_comp_rdkit_properties.amw 118.139
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 0
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 9
_pdbe_chem_comp_rdkit_properties.NumAtoms 15
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 2
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 60.998
_pdbe_chem_comp_rdkit_properties.tpsa 28.680
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.134
_pdbe_chem_comp_rdkit_properties.CrippenMR 33.888
_pdbe_chem_comp_rdkit_properties.chi0v 4.394
_pdbe_chem_comp_rdkit_properties.chi1v 2.397
_pdbe_chem_comp_rdkit_properties.chi2v 0.980
_pdbe_chem_comp_rdkit_properties.chi3v 0.980
_pdbe_chem_comp_rdkit_properties.chi4v 0.587
_pdbe_chem_comp_rdkit_properties.chi0n 10.394
_pdbe_chem_comp_rdkit_properties.chi1n 5.344
_pdbe_chem_comp_rdkit_properties.chi2n 0.980
_pdbe_chem_comp_rdkit_properties.chi3n 0.980
_pdbe_chem_comp_rdkit_properties.chi4n 0.587
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.310
_pdbe_chem_comp_rdkit_properties.kappa1 1.595
_pdbe_chem_comp_rdkit_properties.kappa2 1.585
_pdbe_chem_comp_rdkit_properties.kappa3 0.598
_pdbe_chem_comp_rdkit_properties.Phi 0.281
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
LZ1 UniChem ChEMBL CHEMBL86795
LZ1 UniChem PDBe LZ1
LZ1 UniChem ChEBI 36669
LZ1 UniChem ChEBI 36670
LZ1 UniChem ZINC ZINC000016052862
LZ1 UniChem eMolecules 539596
LZ1 UniChem fdasrs 7C4VQE5C03
LZ1 UniChem HMDB HMDB0244884
LZ1 UniChem NMRShiftDB 10016242
LZ1 UniChem BindingDb 24627
LZ1 UniChem BRENDA 74597
LZ1 UniChem 'Probes And Drugs' PD055978
LZ1 UniChem 'EPA CompTox Dashboard' DTXSID4075374
LZ1 UniChem SureChEMBL SCHEMBL6295
LZ1 UniChem 'PubChem TPHARMA' 15297114
LZ1 UniChem PubChem 9221
LZ1 UniChem Mcule MCULE-6962938625
LZ1 UniChem ACTor 271-44-3
LZ1 UniChem Nikkaji J53.721G
LZ1 UniChem Nikkaji J707.642H
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
LZ1 C1 -0.627 0.595 0.070 ETKDGv3 1
LZ1 C2 -0.357 -0.800 -0.109 ETKDGv3 2
LZ1 C3 0.883 -1.287 -0.157 ETKDGv3 3
LZ1 C4 2.002 -0.312 -0.015 ETKDGv3 4
LZ1 C5 1.745 1.007 0.155 ETKDGv3 5
LZ1 C6 0.340 1.503 0.201 ETKDGv3 6
LZ1 N -2.030 0.768 0.074 ETKDGv3 7
LZ1 C9 -1.676 -1.415 -0.207 ETKDGv3 8
LZ1 N2 -2.603 -0.505 -0.100 ETKDGv3 9
LZ1 H6 0.114 2.553 0.336 ETKDGv3 10
LZ1 H -2.563 1.659 0.184 ETKDGv3 11
LZ1 H3 1.069 -2.344 -0.293 ETKDGv3 12
LZ1 H9 -1.883 -2.467 -0.348 ETKDGv3 13
LZ1 H4 3.025 -0.663 -0.047 ETKDGv3 14
LZ1 H5 2.563 1.709 0.257 ETKDGv3 15
#