data_M04
#
_chem_comp.id M04
_chem_comp.name 1-[4-(4-chlorobenzyl)-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-4-yl]methanamine
_chem_comp.type non-polymer
_chem_comp.pdbx_type ?
_chem_comp.formula "C19 H22 Cl N5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-02-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 355.864
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code M04
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2VO3
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
M04 N1 N1 N 0 1 N N N N N N 7.383 9.830 3.238 7.383 9.830 3.238 N1 M04 1
M04 C2 C2 C 0 1 N N N N N N 8.005 8.922 2.259 8.005 8.922 2.259 C2 M04 2
M04 C3 C3 C 0 1 N N N N N N 9.463 9.277 2.000 9.463 9.277 2.000 C3 M04 3
M04 C5 C5 C 0 1 N N N N N N 10.290 7.913 3.967 10.290 7.913 3.967 C5 M04 4
M04 N6 N6 N 0 1 N N N N N N 10.967 6.884 3.131 10.967 6.884 3.131 N6 M04 5
M04 C7 C7 C 0 1 N N N N N N 9.601 10.282 4.235 9.601 10.282 4.235 C7 M04 6
M04 C8 C8 C 0 1 N N N N N N 8.142 9.929 4.496 8.142 9.929 4.496 C8 M04 7
M04 C9 C9 C 0 1 Y N N N N N 12.018 10.831 2.104 12.018 10.831 2.104 C9 M04 8
M04 C10 C10 C 0 1 Y N N N N N 12.216 10.579 0.755 12.216 10.579 0.755 C10 M04 9
M04 C11 C11 C 0 1 Y N N N N N 12.503 11.611 -0.115 12.503 11.611 -0.115 C11 M04 10
M04 C12 C12 C 0 1 Y N N N N N 12.602 12.906 0.354 12.602 12.906 0.354 C12 M04 11
M04 CL1 CL1 CL 0 0 N N N N N N 13.016 14.193 -0.734 13.016 14.193 -0.734 CL1 M04 12
M04 C14 C14 C 0 1 Y N N N N N 12.426 13.162 1.702 12.426 13.162 1.702 C14 M04 13
M04 C15 C15 C 0 1 Y N N N N N 12.138 12.130 2.570 12.138 12.130 2.570 C15 M04 14
M04 C16 C16 C 0 1 Y N N N N N 5.956 9.786 3.408 5.956 9.786 3.408 C16 M04 15
M04 N17 N17 N 0 1 Y N N N N N 5.490 9.858 4.668 5.490 9.858 4.668 N17 M04 16
M04 C13 C13 C 0 1 N N N N N N 11.757 9.698 3.059 11.757 9.698 3.059 C13 M04 17
M04 C18 C18 C 0 1 Y N N N N N 4.166 9.827 4.851 4.166 9.827 4.851 C18 M04 18
M04 N19 N19 N 0 1 Y N N N N N 3.201 9.721 3.936 3.201 9.721 3.936 N19 M04 19
M04 C20 C20 C 0 1 Y N N N N N 3.699 9.653 2.694 3.699 9.653 2.694 C20 M04 20
M04 N21 N21 N 0 1 Y N N N N N 2.971 9.529 1.547 2.971 9.529 1.547 N21 M04 21
M04 C22 C22 C 0 1 Y N N N N N 3.804 9.503 0.478 3.804 9.503 0.478 C22 M04 22
M04 C23 C23 C 0 1 Y N N N N N 5.096 9.598 0.930 5.096 9.598 0.930 C23 M04 23
M04 C24 C24 C 0 1 Y N N N N N 5.038 9.698 2.353 5.038 9.698 2.353 C24 M04 24
M04 C4 C4 C 0 1 N N N N N N 10.292 9.295 3.286 10.292 9.295 3.286 C4 M04 25
M04 H2C1 1H2C H 0 0 N N N N N N 7.957 7.895 2.651 7.957 7.895 2.651 H2C1 M04 26
M04 H2C2 2H2C H 0 0 N N N N N N 7.457 9.015 1.310 7.457 9.015 1.310 H2C2 M04 27
M04 H8C1 1H8C H 0 0 N N N N N N 7.692 10.714 5.122 7.693 10.714 5.122 H8C1 M04 28
M04 H8C2 2H8C H 0 0 N N N N N N 8.105 8.954 5.003 8.105 8.954 5.003 H8C2 M04 29
M04 H3C1 1H3C H 0 0 N N N N N N 9.890 8.527 1.319 9.890 8.527 1.319 H3C1 M04 30
M04 H3C2 2H3C H 0 0 N N N N N N 9.493 10.286 1.563 9.493 10.286 1.563 H3C2 M04 31
M04 H5C1 1H5C H 0 0 N N N N N N 9.248 7.603 4.133 9.248 7.603 4.133 H5C1 M04 32
M04 H5C2 2H5C H 0 0 N N N N N N 10.838 7.998 4.917 10.838 7.998 4.917 H5C2 M04 33
M04 H6N1 1H6N H 0 0 N N N N N N 11.119 7.248 2.212 11.119 7.248 2.212 H6N1 M04 34
M04 H6N2 2H6N H 0 0 N N N N N N 11.846 6.645 3.544 11.846 6.645 3.544 H6N2 M04 35
M04 H7C1 1H7C H 0 0 N N N N N N 9.639 11.283 3.781 9.639 11.283 3.781 H7C1 M04 36
M04 H7C2 2H7C H 0 0 N N N N N N 10.130 10.243 5.199 10.130 10.243 5.199 H7C2 M04 37
M04 H10 H10 H 0 1 N N N N N N 12.145 9.568 0.382 12.145 9.568 0.382 H10 M04 38
M04 H15 H15 H 0 1 N N N N N N 12.005 12.336 3.622 12.005 12.336 3.622 H15 M04 39
M04 H131 1H13 H 0 0 N N N N N N 12.275 8.814 2.658 12.275 8.814 2.658 H131 M04 40
M04 H132 2H13 H 0 0 N N N N N N 12.112 10.057 4.036 12.112 10.057 4.036 H132 M04 41
M04 H11 H11 H 0 1 N N N N N N 12.651 11.405 -1.165 12.651 11.405 -1.165 H11 M04 42
M04 H14 H14 H 0 1 N N N N N N 12.514 14.172 2.075 12.514 14.172 2.075 H14 M04 43
M04 H18 H18 H 0 1 N N N N N N 3.833 9.897 5.876 3.833 9.897 5.876 H18 M04 44
M04 H21 H21 H 0 1 N N N N N N 1.974 9.467 1.502 1.974 9.467 1.502 H21 M04 45
M04 H22 H22 H 0 1 N N N N N N 3.502 9.421 -0.556 3.502 9.421 -0.556 H22 M04 46
M04 H23 H23 H 0 1 N N N N N N 5.989 9.597 0.323 5.989 9.597 0.323 H23 M04 47
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
M04 N1 C2 SING N N 1
M04 N1 C8 SING N N 2
M04 N1 C16 SING N N 3
M04 C2 C3 SING N N 4
M04 C3 C4 SING N N 5
M04 C5 N6 SING N N 6
M04 C5 C4 SING N N 7
M04 C7 C8 SING N N 8
M04 C7 C4 SING N N 9
M04 C9 C10 SING Y N 10
M04 C9 C15 DOUB Y N 11
M04 C9 C13 SING N N 12
M04 C10 C11 DOUB Y N 13
M04 C11 C12 SING Y N 14
M04 C12 CL1 SING N N 15
M04 C12 C14 DOUB Y N 16
M04 C14 C15 SING Y N 17
M04 C16 N17 SING Y N 18
M04 C16 C24 DOUB Y N 19
M04 N17 C18 DOUB Y N 20
M04 C18 N19 SING Y N 21
M04 C13 C4 SING N N 22
M04 N19 C20 DOUB Y N 23
M04 C20 N21 SING Y N 24
M04 C20 C24 SING Y N 25
M04 N21 C22 SING Y N 26
M04 C22 C23 DOUB Y N 27
M04 C23 C24 SING Y N 28
M04 C2 H2C1 SING N N 29
M04 C2 H2C2 SING N N 30
M04 C8 H8C1 SING N N 31
M04 C8 H8C2 SING N N 32
M04 C3 H3C1 SING N N 33
M04 C3 H3C2 SING N N 34
M04 C5 H5C1 SING N N 35
M04 C5 H5C2 SING N N 36
M04 N6 H6N1 SING N N 37
M04 N6 H6N2 SING N N 38
M04 C7 H7C1 SING N N 39
M04 C7 H7C2 SING N N 40
M04 C10 H10 SING N N 41
M04 C15 H15 SING N N 42
M04 C13 H131 SING N N 43
M04 C13 H132 SING N N 44
M04 C11 H11 SING N N 45
M04 C14 H14 SING N N 46
M04 C18 H18 SING N N 47
M04 N21 H21 SING N N 48
M04 C22 H22 SING N N 49
M04 C23 H23 SING N N 50
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
M04 SMILES ACDLabs 10.04 Clc1ccc(cc1)CC4(CCN(c2ncnc3c2ccn3)CC4)CN
M04 SMILES_CANONICAL CACTVS 3.341 NCC1(CCN(CC1)c2ncnc3[nH]ccc23)Cc4ccc(Cl)cc4
M04 SMILES CACTVS 3.341 NCC1(CCN(CC1)c2ncnc3[nH]ccc23)Cc4ccc(Cl)cc4
M04 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1cc(ccc1CC2(CCN(CC2)c3c4cc[nH]c4ncn3)CN)Cl
M04 SMILES "OpenEye OEToolkits" 1.5.0 c1cc(ccc1CC2(CCN(CC2)c3c4cc[nH]c4ncn3)CN)Cl
M04 InChI InChI 1.03 InChI=1S/C19H22ClN5/c20-15-3-1-14(2-4-15)11-19(12-21)6-9-25(10-7-19)18-16-5-8-22-17(16)23-13-24-18/h1-5,8,13H,6-7,9-12,21H2,(H,22,23,24)
M04 InChIKey InChI 1.03 KCWPSUKJCKZEAO-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
M04 "SYSTEMATIC NAME" ACDLabs 10.04 1-[4-(4-chlorobenzyl)-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-4-yl]methanamine
M04 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[4-[(4-chlorophenyl)methyl]-1-(7H-pyrrolo[3,2-e]pyrimidin-4-yl)piperidin-4-yl]methanamine"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
M04 'Create component' 2008-02-08 EBI
M04 'Modify aromatic_flag' 2011-06-04 RCSB
M04 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id M04
_pdbe_chem_comp_drugbank_details.drugbank_id DB08149
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name
'1-[4-(4-chlorobenzyl)-1-(7H-pyrrolo[2,3-d]pyrimidin-4-yl)piperidin-4-yl]methanamine'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id M04
_pdbe_chem_comp_drugbank_classification.drugbank_id DB08149
_pdbe_chem_comp_drugbank_classification.parent 4-benzylpiperidines
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Piperidines
_pdbe_chem_comp_drugbank_classification.superclass 'Organoheterocyclic compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as 4-benzylpiperidines. These are organic compounds containing a benzyl group attached to the 4-position of a piperidine.'
#
loop_
_pdbe_chem_comp_drugbank_targets.comp_id
_pdbe_chem_comp_drugbank_targets.drugbank_id
_pdbe_chem_comp_drugbank_targets.name
_pdbe_chem_comp_drugbank_targets.organism
_pdbe_chem_comp_drugbank_targets.uniprot_id
_pdbe_chem_comp_drugbank_targets.pharmacologically_active
_pdbe_chem_comp_drugbank_targets.ordinal
M04 DB08149 'cAMP-dependent protein kinase catalytic subunit alpha' Humans P17612 unknown 1
M04 DB08149 'cAMP-dependent protein kinase inhibitor alpha' Humans P61925 unknown 2
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
M04 N1 N 9.750 -0.254 1
M04 C2 C 8.451 0.496 2
M04 C3 C 8.451 1.996 3
M04 C5 C 10.500 4.045 4
M04 N6 N 12.000 4.045 5
M04 C7 C 11.049 1.996 6
M04 C8 C 11.049 0.496 7
M04 C9 C 7.500 4.045 8
M04 C10 C 6.750 5.345 9
M04 C11 C 5.250 5.345 10
M04 C12 C 4.500 4.045 11
M04 CL1 Cl 3.000 4.045 12
M04 C14 C 5.250 2.747 13
M04 C15 C 6.750 2.747 14
M04 C16 C 9.750 -1.754 15
M04 N17 N 8.451 -2.503 16
M04 C13 C 9.000 4.045 17
M04 C18 C 8.451 -4.003 18
M04 N19 N 9.750 -4.753 19
M04 C20 C 11.049 -4.003 20
M04 N21 N 12.468 -4.460 21
M04 C22 C 13.344 -3.253 22
M04 C23 C 12.468 -2.046 23
M04 C24 C 11.049 -2.503 24
M04 C4 C 9.750 2.747 25
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
M04 N1 C2 SINGLE NONE 1
M04 N1 C8 SINGLE NONE 2
M04 N1 C16 SINGLE NONE 3
M04 C2 C3 SINGLE NONE 4
M04 C3 C4 SINGLE NONE 5
M04 C5 N6 SINGLE NONE 6
M04 C5 C4 SINGLE NONE 7
M04 C7 C8 SINGLE NONE 8
M04 C7 C4 SINGLE NONE 9
M04 C9 C10 DOUBLE NONE 10
M04 C9 C15 SINGLE NONE 11
M04 C9 C13 SINGLE NONE 12
M04 C10 C11 SINGLE NONE 13
M04 C11 C12 DOUBLE NONE 14
M04 C12 CL1 SINGLE NONE 15
M04 C12 C14 SINGLE NONE 16
M04 C14 C15 DOUBLE NONE 17
M04 C16 N17 DOUBLE NONE 18
M04 C16 C24 SINGLE NONE 19
M04 N17 C18 SINGLE NONE 20
M04 C18 N19 DOUBLE NONE 21
M04 C13 C4 SINGLE NONE 22
M04 N19 C20 SINGLE NONE 23
M04 C20 N21 SINGLE NONE 24
M04 C20 C24 DOUBLE NONE 25
M04 N21 C22 SINGLE NONE 26
M04 C22 C23 DOUBLE NONE 27
M04 C23 C24 SINGLE NONE 28
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
M04 MurckoScaffold S1 scaffold 'c1ccc(CC2CCN(c3ncnc4[nH]ccc34)CC2)cc1' InChI=1S/C18H20N4/c1-2-4-14(5-3-1)12-15-7-10-22(11-8-15)18-16-6-9-19-17(16)20-13-21-18/h1-6,9,13,15H,7-8,10-12H2,(H,19,20,21) FWFRNYDQDLYPRQ-UHFFFAOYSA-N
M04 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
M04 pyrimidine F2 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
M04 pyrrole F3 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
M04 N1 S1 1
M04 C2 S1 1
M04 C3 S1 1
M04 C7 S1 1
M04 C8 S1 1
M04 C9 S1 1
M04 C10 S1 1
M04 C11 S1 1
M04 C12 S1 1
M04 C14 S1 1
M04 C15 S1 1
M04 C16 S1 1
M04 N17 S1 1
M04 C13 S1 1
M04 C18 S1 1
M04 N19 S1 1
M04 C20 S1 1
M04 N21 S1 1
M04 C22 S1 1
M04 C23 S1 1
M04 C24 S1 1
M04 C4 S1 1
M04 C9 F1 1
M04 C10 F1 1
M04 C11 F1 1
M04 C12 F1 1
M04 C14 F1 1
M04 C15 F1 1
M04 C24 F2 1
M04 C16 F2 1
M04 N17 F2 1
M04 C18 F2 1
M04 N19 F2 1
M04 C20 F2 1
M04 C20 F3 1
M04 C24 F3 1
M04 C23 F3 1
M04 C22 F3 1
M04 N21 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id M04
_pdbe_chem_comp_rdkit_properties.exactmw 355.156
_pdbe_chem_comp_rdkit_properties.amw 355.873
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 25
_pdbe_chem_comp_rdkit_properties.NumAtoms 47
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.368
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 182.854
_pdbe_chem_comp_rdkit_properties.tpsa 70.830
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.536
_pdbe_chem_comp_rdkit_properties.CrippenMR 98.683
_pdbe_chem_comp_rdkit_properties.chi0v 12.870
_pdbe_chem_comp_rdkit_properties.chi1v 7.053
_pdbe_chem_comp_rdkit_properties.chi2v 3.288
_pdbe_chem_comp_rdkit_properties.chi3v 3.288
_pdbe_chem_comp_rdkit_properties.chi4v 2.056
_pdbe_chem_comp_rdkit_properties.chi0n 34.114
_pdbe_chem_comp_rdkit_properties.chi1n 17.517
_pdbe_chem_comp_rdkit_properties.chi2n 3.099
_pdbe_chem_comp_rdkit_properties.chi3n 3.099
_pdbe_chem_comp_rdkit_properties.chi4n 1.961
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.110
_pdbe_chem_comp_rdkit_properties.kappa1 4.782
_pdbe_chem_comp_rdkit_properties.kappa2 6.654
_pdbe_chem_comp_rdkit_properties.kappa3 3.216
_pdbe_chem_comp_rdkit_properties.Phi 1.273
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
M04 UniChem ChEMBL CHEMBL260000
M04 UniChem DrugBank DB08149
M04 UniChem PDBe M04
M04 UniChem ZINC ZINC000016052628
M04 UniChem SureChEMBL SCHEMBL1000903
M04 UniChem 'PubChem TPHARMA' 16800613
M04 UniChem BindingDb 50376067
M04 UniChem 'Probes And Drugs' PD004699
M04 UniChem PubChem 11696113
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
M04 N1 1.717 -0.080 0.372 ETKDGv3 1
M04 C2 0.663 -0.703 1.180 ETKDGv3 2
M04 C3 -0.664 0.045 0.999 ETKDGv3 3
M04 C5 -1.431 -1.123 -1.140 ETKDGv3 4
M04 N6 -1.874 -0.972 -2.526 ETKDGv3 5
M04 C7 0.145 0.911 -1.234 ETKDGv3 6
M04 C8 1.461 0.147 -1.053 ETKDGv3 7
M04 C9 -3.522 0.775 0.118 ETKDGv3 8
M04 C10 -4.469 0.083 -0.543 ETKDGv3 9
M04 C11 -5.688 -0.371 0.157 ETKDGv3 10
M04 C12 -5.863 -0.089 1.454 ETKDGv3 11
M04 CL1 -7.308 -0.627 2.289 ETKDGv3 12
M04 C14 -4.837 0.684 2.184 ETKDGv3 13
M04 C15 -3.731 1.097 1.553 ETKDGv3 14
M04 C16 3.007 0.190 0.949 ETKDGv3 15
M04 N17 3.094 0.737 2.134 ETKDGv3 16
M04 C13 -2.265 1.241 -0.586 ETKDGv3 17
M04 C18 4.373 1.031 2.744 ETKDGv3 18
M04 N19 5.485 0.749 2.121 ETKDGv3 19
M04 C20 5.414 0.150 0.822 ETKDGv3 20
M04 N21 6.509 -0.347 0.073 ETKDGv3 21
M04 C22 5.884 -0.991 -1.038 ETKDGv3 22
M04 C23 4.557 -0.887 -0.967 ETKDGv3 23
M04 C24 4.266 -0.130 0.248 ETKDGv3 24
M04 C4 -1.058 0.250 -0.495 ETKDGv3 25
M04 H2C1 0.931 -0.695 2.259 ETKDGv3 26
M04 H2C2 0.554 -1.767 0.884 ETKDGv3 27
M04 H8C1 1.426 -0.825 -1.588 ETKDGv3 28
M04 H8C2 2.276 0.754 -1.505 ETKDGv3 29
M04 H3C1 -1.457 -0.520 1.535 ETKDGv3 30
M04 H3C2 -0.566 1.035 1.496 ETKDGv3 31
M04 H5C1 -0.579 -1.834 -1.107 ETKDGv3 32
M04 H5C2 -2.243 -1.598 -0.548 ETKDGv3 33
M04 H6N1 -2.386 -1.843 -2.795 ETKDGv3 34
M04 H6N2 -1.030 -0.933 -3.141 ETKDGv3 35
M04 H7C1 -0.067 1.023 -2.318 ETKDGv3 36
M04 H7C2 0.301 1.938 -0.835 ETKDGv3 37
M04 H10 -4.352 -0.152 -1.593 ETKDGv3 38
M04 H15 -2.989 1.668 2.096 ETKDGv3 39
M04 H131 -2.499 1.453 -1.653 ETKDGv3 40
M04 H132 -1.973 2.222 -0.151 ETKDGv3 41
M04 H11 -6.436 -0.934 -0.387 ETKDGv3 42
M04 H14 -4.982 0.921 3.231 ETKDGv3 43
M04 H18 4.408 1.484 3.726 ETKDGv3 44
M04 H21 7.523 -0.329 0.321 ETKDGv3 45
M04 H22 6.423 -1.517 -1.815 ETKDGv3 46
M04 H23 3.853 -1.319 -1.665 ETKDGv3 47
#