data_M1R
#
_chem_comp.id M1R
_chem_comp.name
1-{4-[2-{[(2S)-1-methylpyrrolidin-2-yl]methoxy}-7-(naphthalen-1-yl)-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-4-yl]piperazin-1-yl}propan-1-one
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C30 H38 N6 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-10-31
_chem_comp.pdbx_modified_date 2020-04-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 514.662
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code M1R
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6USX
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
M1R C18 C1 C 0 1 Y N N N N N -27.002 -27.621 23.236 4.317 -0.842 0.720 C18 M1R 1
M1R N5 N1 N 0 1 Y N N N N N -22.160 -26.978 27.533 -1.754 0.524 -0.186 N5 M1R 2
M1R C14 C2 C 0 1 N N N N N N -24.488 -24.260 30.033 -3.221 -3.435 -1.243 C14 M1R 3
M1R C13 C3 C 0 1 N N N N N N -24.878 -25.277 28.970 -2.545 -2.060 -1.246 C13 M1R 4
M1R C17 C4 C 0 1 N N N N N N -22.874 -26.575 29.973 -2.966 -1.760 1.123 C17 M1R 5
M1R C16 C5 C 0 1 N N N N N N -23.690 -26.287 31.235 -3.660 -3.123 1.223 C16 M1R 6
M1R N3 N2 N 0 1 Y N N N N N -22.532 -27.470 25.233 0.272 1.612 0.034 N3 M1R 7
M1R C10 C6 C 0 1 N N N N N N -24.787 -27.438 24.107 2.388 0.503 0.548 C10 M1R 8
M1R C8 C7 C 0 1 N N N N N N -26.707 -27.568 25.765 2.220 -1.810 1.210 C8 M1R 9
M1R C22 C8 C 0 1 Y N N N N N -27.895 -26.984 21.003 6.658 -1.136 0.094 C22 M1R 10
M1R C7 C9 C 0 1 N N N N N N -25.933 -26.627 26.710 0.845 -2.029 0.577 C7 M1R 11
M1R C6 C10 C 0 1 Y N N N N N -23.474 -26.744 27.653 -1.184 -0.652 0.059 C6 M1R 12
M1R C1 C11 C 0 1 Y N N N N N -24.411 -26.862 26.585 0.191 -0.701 0.304 C1 M1R 13
M1R C4 C12 C 0 1 Y N N N N N -21.722 -27.334 26.302 -1.030 1.631 -0.197 C4 M1R 14
M1R C19 C13 C 0 1 Y N N N N N -27.688 -28.852 23.167 4.723 -0.555 2.007 C19 M1R 15
M1R C20 C14 C 0 1 Y N N N N N -28.469 -29.127 22.027 6.073 -0.556 2.343 C20 M1R 16
M1R C21 C15 C 0 1 Y N N N N N -28.573 -28.225 20.935 7.029 -0.839 1.416 C21 M1R 17
M1R C2 C16 C 0 1 Y N N N N N -23.871 -27.233 25.339 0.907 0.472 0.287 C2 M1R 18
M1R N9 N3 N 0 1 N N N N N N -26.225 -27.374 24.377 2.963 -0.838 0.393 N9 M1R 19
M1R O11 O1 O 0 1 N N N N N N -20.423 -27.589 26.092 -1.638 2.814 -0.451 O11 M1R 20
M1R N12 N4 N 0 1 N N N N N N -23.853 -26.347 28.900 -1.943 -1.811 0.071 N12 M1R 21
M1R N15 N5 N 0 1 N N N N N N -24.178 -24.899 31.339 -4.157 -3.493 -0.110 N15 M1R 22
M1R C23 C17 C 0 1 Y N N N N N -27.111 -26.688 22.153 5.287 -1.133 -0.263 C23 M1R 23
M1R C24 C18 C 0 1 Y N N N N N -28.035 -26.085 19.917 7.622 -1.437 -0.884 C24 M1R 24
M1R C25 C19 C 0 1 Y N N N N N -27.366 -24.845 20.009 7.228 -1.721 -2.155 C25 M1R 25
M1R C26 C20 C 0 1 Y N N N N N -26.576 -24.518 21.136 5.879 -1.718 -2.504 C26 M1R 26
M1R C27 C21 C 0 1 Y N N N N N -26.441 -25.442 22.204 4.917 -1.431 -1.584 C27 M1R 27
M1R C28 C22 C 0 1 N N N N N N -19.427 -27.506 27.097 -0.812 3.980 -0.452 C28 M1R 28
M1R C29 C23 C 0 1 N N N N N N -24.234 -24.138 32.498 -5.437 -3.875 -0.290 C29 M1R 29
M1R C30 C24 C 0 1 N N N N N N -23.849 -24.657 33.794 -6.380 -3.926 0.885 C30 M1R 30
M1R O31 O2 O 0 1 N N N N N N -24.517 -22.948 32.306 -5.831 -4.176 -1.397 O31 M1R 31
M1R C32 C25 C 0 1 N N N N N N -22.544 -24.342 34.270 -7.760 -4.387 0.412 C32 M1R 32
M1R C33 C26 C 0 1 N N S N N N -18.086 -27.792 26.430 -1.669 5.211 -0.757 C33 M1R 33
M1R N34 N6 N 0 1 N N N N N N -18.033 -29.215 26.015 -2.612 5.452 0.351 N34 M1R 34
M1R C35 C27 C 0 1 N N N N N N -17.638 -29.323 24.553 -2.322 6.778 0.937 C35 M1R 35
M1R C36 C28 C 0 1 N N N N N N -17.251 -27.886 24.084 -1.624 7.568 -0.198 C36 M1R 36
M1R C37 C29 C 0 1 N N N N N N -17.871 -26.922 25.146 -0.770 6.460 -0.876 C37 M1R 37
M1R C38 C30 C 0 1 N N N N N N -16.974 -29.775 26.922 -4.003 5.376 -0.116 C38 M1R 38
M1R H1 H1 H 0 1 N N N N N N -23.599 -23.711 29.688 -3.766 -3.578 -2.176 H1 M1R 39
M1R H2 H2 H 0 1 N N N N N N -25.322 -23.557 30.173 -2.468 -4.217 -1.136 H2 M1R 40
M1R H3 H3 H 0 1 N N N N N N -24.950 -24.776 27.994 -1.768 -2.039 -2.011 H3 M1R 41
M1R H4 H4 H 0 1 N N N N N N -25.851 -25.720 29.228 -3.286 -1.291 -1.459 H4 M1R 42
M1R H5 H5 H 0 1 N N N N N N -22.509 -27.613 29.964 -3.702 -0.995 0.878 H5 M1R 43
M1R H6 H6 H 0 1 N N N N N N -22.021 -25.886 29.886 -2.496 -1.520 2.077 H6 M1R 44
M1R H7 H7 H 0 1 N N N N N N -24.560 -26.960 31.243 -2.947 -3.872 1.569 H7 M1R 45
M1R H8 H8 H 0 1 N N N N N N -23.057 -26.496 32.110 -4.495 -3.059 1.921 H8 M1R 46
M1R H9 H9 H 0 1 N N N N N N -24.565 -28.427 23.680 2.865 1.184 -0.158 H9 M1R 47
M1R H10 H10 H 0 1 N N N N N N -24.545 -26.658 23.370 2.568 0.857 1.563 H10 M1R 48
M1R H11 H11 H 0 1 N N N N N N -27.781 -27.338 25.816 2.100 -1.423 2.222 H11 M1R 49
M1R H12 H12 H 0 1 N N N N N N -26.541 -28.612 26.069 2.762 -2.755 1.242 H12 M1R 50
M1R H13 H13 H 0 1 N N N N N N -26.160 -25.583 26.447 0.959 -2.575 -0.359 H13 M1R 51
M1R H14 H14 H 0 1 N N N N N N -26.245 -26.820 27.747 0.220 -2.605 1.259 H14 M1R 52
M1R H15 H15 H 0 1 N N N N N N -27.616 -29.569 23.972 3.984 -0.328 2.761 H15 M1R 53
M1R H16 H16 H 0 1 N N N N N N -29.010 -30.061 21.982 6.367 -0.329 3.357 H16 M1R 54
M1R H17 H17 H 0 1 N N N N N N -29.160 -28.482 20.066 8.072 -0.839 1.697 H17 M1R 55
M1R H18 H18 H 0 1 N N N N N N -28.630 -26.338 19.052 8.671 -1.443 -0.627 H18 M1R 56
M1R H19 H19 H 0 1 N N N N N N -27.459 -24.132 19.203 7.971 -1.952 -2.904 H19 M1R 57
M1R H20 H20 H 0 1 N N N N N N -26.074 -23.563 21.183 5.592 -1.946 -3.520 H20 M1R 58
M1R H21 H21 H 0 1 N N N N N N -25.826 -25.195 23.057 3.875 -1.432 -1.869 H21 M1R 59
M1R H22 H22 H 0 1 N N N N N N -19.421 -26.499 27.539 -0.345 4.096 0.526 H22 M1R 60
M1R H23 H23 H 0 1 N N N N N N -19.623 -28.250 27.883 -0.040 3.878 -1.214 H23 M1R 61
M1R H24 H24 H 0 1 N N N N N N -24.570 -24.271 34.530 -5.998 -4.628 1.627 H24 M1R 62
M1R H25 H25 H 0 1 N N N N N N -23.926 -25.753 33.745 -6.461 -2.935 1.330 H25 M1R 63
M1R H26 H26 H 0 1 N N N N N N -22.393 -24.800 35.259 -8.442 -4.424 1.261 H26 M1R 64
M1R H27 H27 H 0 1 N N N N N N -21.793 -24.732 33.567 -8.142 -3.685 -0.330 H27 M1R 65
M1R H28 H28 H 0 1 N N N N N N -22.437 -23.250 34.352 -7.680 -5.378 -0.034 H28 M1R 66
M1R H29 H29 H 0 1 N N N N N N -17.274 -27.580 27.141 -2.219 5.060 -1.686 H29 M1R 67
M1R H31 H31 H 0 1 N N N N N N -18.483 -29.700 23.959 -3.247 7.274 1.231 H31 M1R 68
M1R H32 H32 H 0 1 N N N N N N -16.780 -30.002 24.442 -1.657 6.676 1.795 H32 M1R 69
M1R H33 H33 H 0 1 N N N N N N -16.157 -27.773 24.053 -2.355 7.976 -0.896 H33 M1R 70
M1R H34 H34 H 0 1 N N N N N N -17.669 -27.681 23.087 -0.990 8.356 0.208 H34 M1R 71
M1R H35 H35 H 0 1 N N N N N N -17.183 -26.090 25.357 0.166 6.312 -0.338 H35 M1R 72
M1R H36 H36 H 0 1 N N N N N N -18.831 -26.523 24.788 -0.581 6.705 -1.921 H36 M1R 73
M1R H37 H37 H 0 1 N N N N N N -17.298 -29.678 27.969 -4.194 4.386 -0.529 H37 M1R 74
M1R H38 H38 H 0 1 N N N N N N -16.813 -30.837 26.685 -4.678 5.557 0.720 H38 M1R 75
M1R H39 H39 H 0 1 N N N N N N -16.035 -29.220 26.776 -4.169 6.129 -0.887 H39 M1R 76
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
M1R C24 C25 DOUB Y N 1
M1R C24 C22 SING Y N 2
M1R C25 C26 SING Y N 3
M1R C21 C22 DOUB Y N 4
M1R C21 C20 SING Y N 5
M1R C22 C23 SING Y N 6
M1R C26 C27 DOUB Y N 7
M1R C20 C19 DOUB Y N 8
M1R C23 C27 SING Y N 9
M1R C23 C18 DOUB Y N 10
M1R C19 C18 SING Y N 11
M1R C18 N9 SING N N 12
M1R C36 C35 SING N N 13
M1R C36 C37 SING N N 14
M1R C10 N9 SING N N 15
M1R C10 C2 SING N N 16
M1R N9 C8 SING N N 17
M1R C35 N34 SING N N 18
M1R C37 C33 SING N N 19
M1R N3 C2 DOUB Y N 20
M1R N3 C4 SING Y N 21
M1R C2 C1 SING Y N 22
M1R C8 C7 SING N N 23
M1R N34 C33 SING N N 24
M1R N34 C38 SING N N 25
M1R O11 C4 SING N N 26
M1R O11 C28 SING N N 27
M1R C4 N5 DOUB Y N 28
M1R C33 C28 SING N N 29
M1R C1 C7 SING N N 30
M1R C1 C6 DOUB Y N 31
M1R N5 C6 SING Y N 32
M1R C6 N12 SING N N 33
M1R N12 C13 SING N N 34
M1R N12 C17 SING N N 35
M1R C13 C14 SING N N 36
M1R C17 C16 SING N N 37
M1R C14 N15 SING N N 38
M1R C16 N15 SING N N 39
M1R N15 C29 SING N N 40
M1R O31 C29 DOUB N N 41
M1R C29 C30 SING N N 42
M1R C30 C32 SING N N 43
M1R C14 H1 SING N N 44
M1R C14 H2 SING N N 45
M1R C13 H3 SING N N 46
M1R C13 H4 SING N N 47
M1R C17 H5 SING N N 48
M1R C17 H6 SING N N 49
M1R C16 H7 SING N N 50
M1R C16 H8 SING N N 51
M1R C10 H9 SING N N 52
M1R C10 H10 SING N N 53
M1R C8 H11 SING N N 54
M1R C8 H12 SING N N 55
M1R C7 H13 SING N N 56
M1R C7 H14 SING N N 57
M1R C19 H15 SING N N 58
M1R C20 H16 SING N N 59
M1R C21 H17 SING N N 60
M1R C24 H18 SING N N 61
M1R C25 H19 SING N N 62
M1R C26 H20 SING N N 63
M1R C27 H21 SING N N 64
M1R C28 H22 SING N N 65
M1R C28 H23 SING N N 66
M1R C30 H24 SING N N 67
M1R C30 H25 SING N N 68
M1R C32 H26 SING N N 69
M1R C32 H27 SING N N 70
M1R C32 H28 SING N N 71
M1R C33 H29 SING N N 72
M1R C35 H31 SING N N 73
M1R C35 H32 SING N N 74
M1R C36 H33 SING N N 75
M1R C36 H34 SING N N 76
M1R C37 H35 SING N N 77
M1R C37 H36 SING N N 78
M1R C38 H37 SING N N 79
M1R C38 H38 SING N N 80
M1R C38 H39 SING N N 81
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
M1R SMILES ACDLabs 12.01 c5(N2Cc3nc(nc(N1CCN(CC1)C(CC)=O)c3CC2)OCC4N(C)CCC4)cccc6c5cccc6
M1R InChI InChI 1.03 InChI=1S/C30H38N6O2/c1-3-28(37)34-16-18-35(19-17-34)29-25-13-15-36(27-12-6-9-22-8-4-5-11-24(22)27)20-26(25)31-30(32-29)38-21-23-10-7-14-33(23)2/h4-6,8-9,11-12,23H,3,7,10,13-21H2,1-2H3/t23-/m0/s1
M1R InChIKey InChI 1.03 PCPBPWDPZNCVFV-QHCPKHFHSA-N
M1R SMILES_CANONICAL CACTVS 3.385 CCC(=O)N1CCN(CC1)c2nc(OC[C@@H]3CCCN3C)nc4CN(CCc24)c5cccc6ccccc56
M1R SMILES CACTVS 3.385 CCC(=O)N1CCN(CC1)c2nc(OC[CH]3CCCN3C)nc4CN(CCc24)c5cccc6ccccc56
M1R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CCC(=O)N1CCN(CC1)c2c3c(nc(n2)OC[C@@H]4CCCN4C)CN(CC3)c5cccc6c5cccc6
M1R SMILES "OpenEye OEToolkits" 2.0.7 CCC(=O)N1CCN(CC1)c2c3c(nc(n2)OCC4CCCN4C)CN(CC3)c5cccc6c5cccc6
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
M1R "SYSTEMATIC NAME" ACDLabs 12.01 1-{4-[2-{[(2S)-1-methylpyrrolidin-2-yl]methoxy}-7-(naphthalen-1-yl)-5,6,7,8-tetrahydropyrido[3,4-d]pyrimidin-4-yl]piperazin-1-yl}propan-1-one
M1R "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 1-[4-[2-[[(2~{S})-1-methylpyrrolidin-2-yl]methoxy]-7-naphthalen-1-yl-6,8-dihydro-5~{H}-pyrido[3,4-d]pyrimidin-4-yl]piperazin-1-yl]propan-1-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
M1R 'Create component' 2019-10-31 RCSB
M1R 'Initial release' 2020-04-22 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
M1R C18 C 6.984 -3.634 1
M1R N5 N 13.578 -1.348 2
M1R C14 C 13.578 3.152 3
M1R C13 C 13.578 1.652 4
M1R C17 C 10.980 1.652 5
M1R C16 C 10.980 3.152 6
M1R N3 N 12.279 -3.598 7
M1R C10 C 9.639 -3.650 8
M1R C8 C 8.280 -1.317 9
M1R C22 C 4.386 -3.644 10
M1R C7 C 9.639 -0.546 11
M1R C6 C 12.279 -0.598 12
M1R C1 C 10.980 -1.348 13
M1R C4 C 13.578 -2.848 14
M1R C19 C 6.990 -5.134 15
M1R C20 C 5.694 -5.889 16
M1R C21 C 4.392 -5.144 17
M1R C2 C 10.980 -2.848 18
M1R N9 N 8.280 -2.879 19
M1R O11 O 14.877 -3.598 20
M1R N12 N 12.279 0.902 21
M1R N15 N 12.279 3.902 22
M1R C23 C 5.682 -2.889 23
M1R C24 C 3.018 -2.889 24
M1R C25 C 3.000 -1.327 25
M1R C26 C 4.350 -0.541 26
M1R C27 C 5.700 -1.327 27
M1R C28 C 14.877 -5.098 28
M1R C29 C 12.279 5.402 29
M1R C30 C 13.578 6.152 30
M1R O31 O 10.980 6.152 31
M1R C32 C 13.578 7.652 32
M1R C33 C 16.176 -5.848 33
M1R N34 N 17.547 -5.238 34
M1R C35 C 18.550 -6.353 35
M1R C36 C 17.800 -7.652 36
M1R C37 C 16.333 -7.340 37
M1R C38 C 17.859 -3.771 38
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
M1R C24 C25 DOUBLE NONE 1
M1R C24 C22 SINGLE NONE 2
M1R C25 C26 SINGLE NONE 3
M1R C21 C22 DOUBLE NONE 4
M1R C21 C20 SINGLE NONE 5
M1R C22 C23 SINGLE NONE 6
M1R C26 C27 DOUBLE NONE 7
M1R C20 C19 DOUBLE NONE 8
M1R C23 C27 SINGLE NONE 9
M1R C23 C18 DOUBLE NONE 10
M1R C19 C18 SINGLE NONE 11
M1R C18 N9 SINGLE NONE 12
M1R C36 C35 SINGLE NONE 13
M1R C36 C37 SINGLE NONE 14
M1R C10 N9 SINGLE NONE 15
M1R C10 C2 SINGLE NONE 16
M1R N9 C8 SINGLE NONE 17
M1R C35 N34 SINGLE NONE 18
M1R C37 C33 SINGLE NONE 19
M1R N3 C2 DOUBLE NONE 20
M1R N3 C4 SINGLE NONE 21
M1R C2 C1 SINGLE NONE 22
M1R C8 C7 SINGLE NONE 23
M1R N34 C33 SINGLE NONE 24
M1R N34 C38 SINGLE NONE 25
M1R O11 C4 SINGLE NONE 26
M1R O11 C28 SINGLE NONE 27
M1R C4 N5 DOUBLE NONE 28
M1R C33 C28 SINGLE BEGINWEDGE 29
M1R C1 C7 SINGLE NONE 30
M1R C1 C6 DOUBLE NONE 31
M1R N5 C6 SINGLE NONE 32
M1R C6 N12 SINGLE NONE 33
M1R N12 C13 SINGLE NONE 34
M1R N12 C17 SINGLE NONE 35
M1R C13 C14 SINGLE NONE 36
M1R C17 C16 SINGLE NONE 37
M1R C14 N15 SINGLE NONE 38
M1R C16 N15 SINGLE NONE 39
M1R N15 C29 SINGLE NONE 40
M1R O31 C29 DOUBLE NONE 41
M1R C29 C30 SINGLE NONE 42
M1R C30 C32 SINGLE NONE 43
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
M1R MurckoScaffold S1 scaffold 'c1ccc2c(N3CCc4c(nc(OC[C@@H]5CCCN5)nc4N4CCNCC4)C3)cccc2c1' InChI=1S/C26H32N6O/c1-2-8-21-19(5-1)6-3-9-24(21)32-14-10-22-23(17-32)29-26(33-18-20-7-4-11-28-20)30-25(22)31-15-12-27-13-16-31/h1-3,5-6,8-9,20,27-28H,4,7,10-18H2/t20-/m0/s1 ABCLFUDBNORIQZ-FQEVSTJZSA-N
M1R amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
M1R napthalene F2 fragment c1ccc2ccccc2c1 InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H UFWIBTONFRDIAS-UHFFFAOYSA-N
M1R phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
M1R piperazine F4 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
M1R pyrimidine F5 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
M1R Z2856434905 F6 fragment 'CN1CCC[C@@H]1CO' InChI=1S/C6H13NO/c1-7-4-2-3-6(7)5-8/h6,8H,2-5H2,1H3/t6-/m1/s1 VCOJPHPOVDIRJK-ZCFIWIBFSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
M1R C18 S1 1
M1R N5 S1 1
M1R C14 S1 1
M1R C13 S1 1
M1R C17 S1 1
M1R C16 S1 1
M1R N3 S1 1
M1R C10 S1 1
M1R C8 S1 1
M1R C22 S1 1
M1R C7 S1 1
M1R C6 S1 1
M1R C1 S1 1
M1R C4 S1 1
M1R C19 S1 1
M1R C20 S1 1
M1R C21 S1 1
M1R C2 S1 1
M1R N9 S1 1
M1R O11 S1 1
M1R N12 S1 1
M1R N15 S1 1
M1R C23 S1 1
M1R C24 S1 1
M1R C25 S1 1
M1R C26 S1 1
M1R C27 S1 1
M1R C28 S1 1
M1R C33 S1 1
M1R N34 S1 1
M1R C35 S1 1
M1R C36 S1 1
M1R C37 S1 1
M1R N15 F1 1
M1R C29 F1 1
M1R O31 F1 1
M1R C30 F1 1
M1R C19 F2 1
M1R C20 F2 1
M1R C21 F2 1
M1R C22 F2 1
M1R C23 F2 1
M1R C18 F2 1
M1R C27 F2 1
M1R C26 F2 1
M1R C25 F2 1
M1R C24 F2 1
M1R C18 F3 1
M1R C23 F3 1
M1R C22 F3 1
M1R C21 F3 1
M1R C20 F3 1
M1R C19 F3 1
M1R C22 F3 2
M1R C24 F3 2
M1R C25 F3 2
M1R C26 F3 2
M1R C27 F3 2
M1R C23 F3 2
M1R N12 F4 1
M1R C13 F4 1
M1R C14 F4 1
M1R N15 F4 1
M1R C16 F4 1
M1R C17 F4 1
M1R C1 F5 1
M1R C2 F5 1
M1R N3 F5 1
M1R C4 F5 1
M1R N5 F5 1
M1R C6 F5 1
M1R C38 F6 1
M1R N34 F6 1
M1R C35 F6 1
M1R C36 F6 1
M1R C37 F6 1
M1R C33 F6 1
M1R C28 F6 1
M1R O11 F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id M1R
_pdbe_chem_comp_rdkit_properties.exactmw 514.306
_pdbe_chem_comp_rdkit_properties.amw 514.674
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 38
_pdbe_chem_comp_rdkit_properties.NumAtoms 76
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 278.134
_pdbe_chem_comp_rdkit_properties.tpsa 65.040
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.963
_pdbe_chem_comp_rdkit_properties.CrippenMR 145.969
_pdbe_chem_comp_rdkit_properties.chi0v 18.500
_pdbe_chem_comp_rdkit_properties.chi1v 10.190
_pdbe_chem_comp_rdkit_properties.chi2v 4.776
_pdbe_chem_comp_rdkit_properties.chi3v 4.776
_pdbe_chem_comp_rdkit_properties.chi4v 3.096
_pdbe_chem_comp_rdkit_properties.chi0n 56.500
_pdbe_chem_comp_rdkit_properties.chi1n 29.190
_pdbe_chem_comp_rdkit_properties.chi2n 4.776
_pdbe_chem_comp_rdkit_properties.chi3n 4.776
_pdbe_chem_comp_rdkit_properties.chi4n 3.096
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.390
_pdbe_chem_comp_rdkit_properties.kappa1 6.491
_pdbe_chem_comp_rdkit_properties.kappa2 10.769
_pdbe_chem_comp_rdkit_properties.kappa3 4.892
_pdbe_chem_comp_rdkit_properties.Phi 1.839
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
M1R UniChem PDBe M1R
M1R UniChem PubChem 146020601
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
M1R C18 1.736 3.851 -0.226 ETKDGv3 1
M1R N5 -1.147 -1.832 -0.111 ETKDGv3 2
M1R C14 3.443 -3.044 0.730 ETKDGv3 3
M1R C13 1.978 -2.746 1.064 ETKDGv3 4
M1R C17 1.347 -3.461 -1.297 ETKDGv3 5
M1R C16 2.359 -4.573 -0.996 ETKDGv3 6
M1R N3 -1.721 0.458 -0.299 ETKDGv3 7
M1R C10 -0.169 2.283 -0.632 ETKDGv3 8
M1R C8 2.188 1.588 -1.200 ETKDGv3 9
M1R C22 2.251 5.645 1.369 ETKDGv3 10
M1R C7 2.046 0.217 -0.542 ETKDGv3 11
M1R C6 0.242 -1.487 -0.239 ETKDGv3 12
M1R C1 0.598 -0.199 -0.424 ETKDGv3 13
M1R C4 -2.077 -0.925 -0.137 ETKDGv3 14
M1R C19 2.174 4.765 -1.308 ETKDGv3 15
M1R C20 2.599 6.001 -1.020 ETKDGv3 16
M1R C21 2.638 6.465 0.380 ETKDGv3 17
M1R C2 -0.479 0.827 -0.424 ETKDGv3 18
M1R N9 1.273 2.535 -0.562 ETKDGv3 19
M1R O11 -3.413 -1.308 -0.007 ETKDGv3 20
M1R N12 1.224 -2.529 -0.172 ETKDGv3 21
M1R N15 3.569 -4.011 -0.375 ETKDGv3 22
M1R C23 1.781 4.269 1.058 ETKDGv3 23
M1R C24 2.283 6.078 2.780 ETKDGv3 24
M1R C25 1.908 5.237 3.751 ETKDGv3 25
M1R C26 1.458 3.859 3.451 ETKDGv3 26
M1R C27 1.398 3.399 2.195 ETKDGv3 27
M1R C28 -4.483 -0.369 -0.028 ETKDGv3 28
M1R C29 4.871 -4.504 -0.763 ETKDGv3 29
M1R C30 6.129 -3.729 -0.476 ETKDGv3 30
M1R O31 4.968 -5.585 -1.405 ETKDGv3 31
M1R C32 6.314 -2.611 -1.496 ETKDGv3 32
M1R C33 -5.821 -1.098 0.133 ETKDGv3 33
M1R N34 -6.932 -0.130 0.105 ETKDGv3 34
M1R C35 -8.009 -0.722 -0.709 ETKDGv3 35
M1R C36 -7.569 -2.114 -1.133 ETKDGv3 36
M1R C37 -6.068 -2.092 -0.997 ETKDGv3 37
M1R C38 -7.399 0.202 1.461 ETKDGv3 38
M1R H1 3.941 -3.445 1.639 ETKDGv3 39
M1R H2 3.939 -2.092 0.444 ETKDGv3 40
M1R H3 1.537 -3.607 1.612 ETKDGv3 41
M1R H4 1.923 -1.855 1.727 ETKDGv3 42
M1R H5 0.358 -3.917 -1.520 ETKDGv3 43
M1R H6 1.685 -2.898 -2.194 ETKDGv3 44
M1R H7 1.905 -5.314 -0.302 ETKDGv3 45
M1R H8 2.597 -5.095 -1.948 ETKDGv3 46
M1R H9 -0.699 2.879 0.142 ETKDGv3 47
M1R H10 -0.544 2.594 -1.630 ETKDGv3 48
M1R H11 3.242 1.928 -1.096 ETKDGv3 49
M1R H12 1.952 1.517 -2.285 ETKDGv3 50
M1R H13 2.490 0.259 0.476 ETKDGv3 51
M1R H14 2.617 -0.521 -1.147 ETKDGv3 52
M1R H15 2.145 4.432 -2.338 ETKDGv3 53
M1R H16 2.915 6.664 -1.815 ETKDGv3 54
M1R H17 2.983 7.469 0.595 ETKDGv3 55
M1R H18 2.611 7.078 3.038 ETKDGv3 56
M1R H19 1.937 5.566 4.782 ETKDGv3 57
M1R H20 1.175 3.210 4.270 ETKDGv3 58
M1R H21 1.072 2.380 2.027 ETKDGv3 59
M1R H22 -4.471 0.197 -0.986 ETKDGv3 60
M1R H23 -4.356 0.352 0.809 ETKDGv3 61
M1R H24 6.109 -3.304 0.548 ETKDGv3 62
M1R H25 7.006 -4.411 -0.528 ETKDGv3 63
M1R H26 5.459 -1.904 -1.462 ETKDGv3 64
M1R H27 6.395 -3.034 -2.520 ETKDGv3 65
M1R H28 7.246 -2.051 -1.269 ETKDGv3 66
M1R H29 -5.803 -1.670 1.092 ETKDGv3 67
M1R H31 -8.149 -0.092 -1.613 ETKDGv3 68
M1R H32 -8.987 -0.776 -0.179 ETKDGv3 69
M1R H33 -7.997 -2.871 -0.438 ETKDGv3 70
M1R H34 -7.883 -2.346 -2.174 ETKDGv3 71
M1R H35 -5.621 -1.734 -1.952 ETKDGv3 72
M1R H36 -5.666 -3.100 -0.754 ETKDGv3 73
M1R H37 -8.196 0.974 1.406 ETKDGv3 74
M1R H38 -7.799 -0.697 1.981 ETKDGv3 75
M1R H39 -6.563 0.625 2.059 ETKDGv3 76
#