data_M24
#
_chem_comp.id M24
_chem_comp.name
"5'-O-[(R)-[({3-[5-(2-fluorophenyl)-1,2,4-oxadiazol-3-yl]phenyl}carbonyl)oxy](hydroxy)phosphoryl]adenosine"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C25 H21 F N7 O9 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-07-29
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 613.448
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code M24
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3IES
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
M24 P P P 0 1 N N N N N N -29.949 11.676 -8.256 -0.760 -1.819 -0.535 P M24 1
M24 N1 N1 N 0 1 Y N N N N N -30.571 6.598 -16.979 -10.173 3.124 0.372 N1 M24 2
M24 C2 C2 C 0 1 Y N N N N N -30.885 7.881 -17.236 -9.857 2.305 1.359 C2 M24 3
M24 N3 N3 N 0 1 Y N N N N N -30.968 8.808 -16.272 -8.845 1.467 1.285 N3 M24 4
M24 C4 C4 C 0 1 Y N N N N N -30.760 8.478 -14.970 -8.089 1.412 0.193 C4 M24 5
M24 C5 C5 C 0 1 Y N N N N N -30.432 7.189 -14.630 -8.384 2.263 -0.885 C5 M24 6
M24 C6 C6 C 0 1 Y N N N N N -30.323 6.197 -15.714 -9.474 3.140 -0.759 C6 M24 7
M24 N6 N6 N 0 1 N N N N N N -30.015 4.896 -15.433 -9.813 4.002 -1.788 N6 M24 8
M24 N7 N7 N 0 1 Y N N N N N -30.280 7.135 -13.278 -7.474 2.008 -1.856 N7 M24 9
M24 C8 C8 C 0 1 Y N N N N N -30.486 8.388 -12.820 -6.659 1.078 -1.452 C8 M24 10
M24 N9 N9 N 0 1 Y N N N N N -30.791 9.184 -13.845 -6.997 0.677 -0.193 N9 M24 11
M24 "C1'" C1* C 0 1 N N R N N N -31.076 10.627 -13.764 -6.318 -0.350 0.601 C1* M24 12
M24 O1P O1P O 0 1 N N N N N N -28.500 12.111 -8.091 -0.370 -3.232 -0.329 O1P M24 13
M24 "C2'" C2* C 0 1 N N R N N N -32.570 10.911 -13.836 -6.975 -1.729 0.371 C2* M24 14
M24 "O2'" O2* O 0 1 N N N N N N -32.717 12.155 -14.504 -7.889 -2.031 1.428 O2* M24 15
M24 C24 C24 C 0 1 N N N N N N -29.311 9.071 -8.726 1.616 -1.023 -0.222 C24 M24 16
M24 O25 O25 O 0 1 N N N N N N -28.716 9.380 -9.744 1.905 -1.871 -1.042 O25 M24 17
M24 C26 C26 C 0 1 Y N N N N N -29.349 7.675 -8.135 2.674 -0.175 0.366 C26 M24 18
M24 C27 C27 C 0 1 Y N N N N N -29.830 7.537 -6.832 2.344 0.801 1.311 C27 M24 19
M24 C28 C28 C 0 1 Y N N N N N -29.908 6.297 -6.221 3.332 1.593 1.860 C28 M24 20
M24 C29 C29 C 0 1 Y N N N N N -29.478 5.174 -6.895 4.650 1.426 1.481 C29 M24 21
M24 O2P O2P O 0 1 N N N N N N -30.029 10.078 -8.006 0.333 -0.856 0.152 O2P M24 22
M24 "C3'" C3* C 0 1 N N S N N N -32.983 11.100 -12.398 -5.787 -2.717 0.384 C3* M24 23
M24 "O3'" O3* O 0 1 N N N N N N -34.104 11.996 -12.311 -5.931 -3.660 1.449 O3* M24 24
M24 C30 C30 C 0 1 Y N N N N N -29.016 5.303 -8.184 4.991 0.456 0.540 C30 M24 25
M24 C31 C31 C 0 1 Y N N N N N -28.931 6.550 -8.814 4.003 -0.350 -0.014 C31 M24 26
M24 C32 C32 C 0 1 Y N N N N N -28.577 4.072 -8.874 6.408 0.280 0.134 C32 M24 27
M24 N33 N33 N 0 1 Y N N N N N -28.166 4.082 -10.137 6.863 -0.583 -0.738 N33 M24 28
M24 O34 O34 O 0 1 Y N N N N N -27.838 2.819 -10.422 8.066 -0.477 -0.847 O34 M24 29
M24 C35 C35 C 0 1 Y N N N N N -28.030 2.015 -9.378 8.516 0.491 -0.034 C35 M24 30
M24 N36 N36 N 0 1 Y N N N N N -28.491 2.799 -8.374 7.464 0.985 0.592 N36 M24 31
M24 C37 C37 C 0 1 Y N N N N N -27.807 0.573 -9.406 9.919 0.927 0.125 C37 M24 32
M24 C38 C38 C 0 1 Y N N N N N -27.286 -0.049 -10.517 10.239 1.949 1.019 C38 M24 33
M24 C39 C39 C 0 1 Y N N N N N -27.123 -1.429 -10.487 11.551 2.351 1.163 C39 M24 34
M24 O3P O3P O 0 1 N N N N N N -31.003 12.106 -7.290 -0.834 -1.507 -2.113 O3P M24 35
M24 "C4'" C4* C 0 1 N N R N N N -31.724 11.665 -11.751 -4.553 -1.818 0.621 C4* M24 36
M24 "O4'" O4* O 0 1 N N N N N N -30.618 11.119 -12.505 -4.954 -0.512 0.154 O4* M24 37
M24 C40 C40 C 0 1 Y N N N N N -27.514 -2.145 -9.360 12.550 1.742 0.423 C40 M24 38
M24 C41 C41 C 0 1 Y N N N N N -28.077 -1.494 -8.269 12.243 0.728 -0.465 C41 M24 39
M24 C42 C42 C 0 1 Y N N N N N -28.219 -0.124 -8.300 10.934 0.312 -0.616 C42 M24 40
M24 F43 F43 F 0 1 N N N N N N -28.741 0.588 -7.292 10.634 -0.683 -1.480 F43 M24 41
M24 "C5'" C5* C 0 1 N N N N N N -31.605 11.275 -10.286 -3.359 -2.329 -0.188 C5* M24 42
M24 "O5'" O5* O 0 1 N N N N N N -30.370 11.818 -9.803 -2.201 -1.556 0.132 O5* M24 43
M24 H2 H2 H 0 1 N N N N N N -31.077 8.175 -18.257 -10.452 2.324 2.260 H2 M24 44
M24 HN6 HN6 H 0 1 N N N N N N -30.014 4.363 -16.279 -10.568 4.603 -1.688 HN6 M24 45
M24 HN6A HN6A H 0 0 N N N N N N -29.110 4.852 -15.010 -9.296 4.005 -2.608 HN6A M24 46
M24 H8 H8 H 0 1 N N N N N N -30.415 8.697 -11.787 -5.837 0.681 -2.028 H8 M24 47
M24 "H1'" H1* H 0 1 N N N N N N -30.569 11.114 -14.610 -6.342 -0.088 1.659 H1* M24 48
M24 "H2'" H2* H 0 1 N N N N N N -33.150 10.128 -14.346 -7.482 -1.755 -0.593 H2* M24 49
M24 "HO2'" HO2* H 0 0 N N N N N N -33.639 12.372 -14.571 -8.330 -2.886 1.334 HO2* M24 50
M24 H27 H27 H 0 1 N N N N N N -30.148 8.415 -6.289 1.315 0.936 1.610 H27 M24 51
M24 H28 H28 H 0 1 N N N N N N -30.304 6.210 -5.220 3.073 2.347 2.589 H28 M24 52
M24 H29 H29 H 0 1 N N N N N N -29.504 4.206 -6.417 5.418 2.050 1.915 H29 M24 53
M24 "H3'" H3* H 0 1 N N N N N N -33.322 10.179 -11.901 -5.709 -3.233 -0.573 H3* M24 54
M24 "HO3'" HO3* H 0 0 N N N N N N -34.353 12.105 -11.401 -6.724 -4.210 1.383 HO3* M24 55
M24 H31 H31 H 0 1 N N N N N N -28.543 6.630 -9.819 4.264 -1.106 -0.740 H31 M24 56
M24 H38 H38 H 0 1 N N N N N N -27.010 0.521 -11.392 9.461 2.426 1.596 H38 M24 57
M24 H39 H39 H 0 1 N N N N N N -26.695 -1.943 -11.335 11.799 3.143 1.854 H39 M24 58
M24 HO3P HO3P H 0 0 N N N N N N -30.613 12.654 -6.619 -1.084 -0.596 -2.322 HO3P M24 59
M24 "H4'" H4* H 0 1 N N N N N N -31.743 12.765 -11.770 -4.306 -1.785 1.681 H4* M24 60
M24 H40 H40 H 0 1 N N N N N N -27.379 -3.216 -9.333 13.576 2.061 0.541 H40 M24 61
M24 H41 H41 H 0 1 N N N N N N -28.400 -2.056 -7.405 13.028 0.258 -1.039 H41 M24 62
M24 "H5'" H5* H 0 1 N N N N N N -32.450 11.684 -9.713 -3.177 -3.376 0.055 H5* M24 63
M24 "H5'A" H5*A H 0 0 N N N N N N -31.606 10.180 -10.182 -3.575 -2.236 -1.253 H5*A M24 64
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
M24 "O5'" P SING N N 1
M24 P O1P DOUB N N 2
M24 P O2P SING N N 3
M24 P O3P SING N N 4
M24 C2 N1 DOUB Y N 5
M24 N1 C6 SING Y N 6
M24 C2 N3 SING Y N 7
M24 C2 H2 SING N N 8
M24 N3 C4 DOUB Y N 9
M24 C4 C5 SING Y N 10
M24 C4 N9 SING Y N 11
M24 C6 C5 DOUB Y N 12
M24 C5 N7 SING Y N 13
M24 C6 N6 SING N N 14
M24 N6 HN6 SING N N 15
M24 N6 HN6A SING N N 16
M24 N7 C8 DOUB Y N 17
M24 N9 C8 SING Y N 18
M24 C8 H8 SING N N 19
M24 N9 "C1'" SING N N 20
M24 "C2'" "C1'" SING N N 21
M24 "C1'" "O4'" SING N N 22
M24 "C1'" "H1'" SING N N 23
M24 "O2'" "C2'" SING N N 24
M24 "C2'" "C3'" SING N N 25
M24 "C2'" "H2'" SING N N 26
M24 "O2'" "HO2'" SING N N 27
M24 O25 C24 DOUB N N 28
M24 C24 C26 SING N N 29
M24 C24 O2P SING N N 30
M24 C31 C26 DOUB Y N 31
M24 C26 C27 SING Y N 32
M24 C27 C28 DOUB Y N 33
M24 C27 H27 SING N N 34
M24 C29 C28 SING Y N 35
M24 C28 H28 SING N N 36
M24 C30 C29 DOUB Y N 37
M24 C29 H29 SING N N 38
M24 "C3'" "O3'" SING N N 39
M24 "C3'" "C4'" SING N N 40
M24 "C3'" "H3'" SING N N 41
M24 "O3'" "HO3'" SING N N 42
M24 C32 C30 SING Y N 43
M24 C31 C30 SING Y N 44
M24 C31 H31 SING N N 45
M24 N33 C32 DOUB Y N 46
M24 C32 N36 SING Y N 47
M24 O34 N33 SING Y N 48
M24 O34 C35 SING Y N 49
M24 C37 C35 SING Y N 50
M24 C35 N36 DOUB Y N 51
M24 C38 C37 DOUB Y N 52
M24 C37 C42 SING Y N 53
M24 C38 C39 SING Y N 54
M24 C38 H38 SING N N 55
M24 C39 C40 DOUB Y N 56
M24 C39 H39 SING N N 57
M24 O3P HO3P SING N N 58
M24 "O4'" "C4'" SING N N 59
M24 "C4'" "C5'" SING N N 60
M24 "C4'" "H4'" SING N N 61
M24 C40 C41 SING Y N 62
M24 C40 H40 SING N N 63
M24 C42 C41 DOUB Y N 64
M24 C41 H41 SING N N 65
M24 C42 F43 SING N N 66
M24 "C5'" "O5'" SING N N 67
M24 "C5'" "H5'" SING N N 68
M24 "C5'" "H5'A" SING N N 69
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
M24 SMILES ACDLabs 11.02 O=P(OCC3OC(n1c2ncnc(N)c2nc1)C(O)C3O)(O)OC(=O)c4cccc(c4)c5nc(on5)c6ccccc6F
M24 SMILES_CANONICAL CACTVS 3.352 Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)OC(=O)c4cccc(c4)c5noc(n5)c6ccccc6F)[C@@H](O)[C@H]3O
M24 SMILES CACTVS 3.352 Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)OC(=O)c4cccc(c4)c5noc(n5)c6ccccc6F)[CH](O)[CH]3O
M24 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 c1ccc(c(c1)c2nc(no2)c3cccc(c3)C(=O)O[P@](=O)(O)OC[C@@H]4[C@H]([C@H]([C@@H](O4)n5cnc6c5ncnc6N)O)O)F
M24 SMILES "OpenEye OEToolkits" 1.7.0 c1ccc(c(c1)c2nc(no2)c3cccc(c3)C(=O)OP(=O)(O)OCC4C(C(C(O4)n5cnc6c5ncnc6N)O)O)F
M24 InChI InChI 1.03 InChI=1S/C25H21FN7O9P/c26-15-7-2-1-6-14(15)23-31-21(32-41-23)12-4-3-5-13(8-12)25(36)42-43(37,38)39-9-16-18(34)19(35)24(40-16)33-11-30-17-20(27)28-10-29-22(17)33/h1-8,10-11,16,18-19,24,34-35H,9H2,(H,37,38)(H2,27,28,29)/t16-,18-,19-,24-/m1/s1
M24 InChIKey InChI 1.03 XGTSAMZIYGBAIU-VEBYGKHWSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
M24 "SYSTEMATIC NAME" ACDLabs 11.02 "5'-O-[(R)-[({3-[5-(2-fluorophenyl)-1,2,4-oxadiazol-3-yl]phenyl}carbonyl)oxy](hydroxy)phosphoryl]adenosine"
M24 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 "[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-3,4-dihydroxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl] 3-[5-(2-fluorophenyl)-1,2,4-oxadiazol-3-yl]benzoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
M24 'Create component' 2009-07-29 RCSB
M24 'Modify aromatic_flag' 2011-06-04 RCSB
M24 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
M24 P P 11.882 0.796 1
M24 N1 N 7.311 -8.981 2
M24 C2 C 7.311 -7.481 3
M24 N3 N 8.610 -6.731 4
M24 C4 C 9.909 -7.481 5
M24 C5 C 9.909 -8.981 6
M24 C6 C 8.610 -9.731 7
M24 N6 N 8.610 -11.231 8
M24 N7 N 11.328 -9.438 9
M24 C8 C 12.204 -8.231 10
M24 N9 N 11.328 -7.024 11
M24 "C1'" C 11.794 -5.598 12
M24 O1P O 13.309 1.257 13
M24 "C2'" C 13.222 -5.137 14
M24 "O2'" O 14.434 -6.021 15
M24 C24 C 12.427 3.337 16
M24 O25 O 13.893 3.022 17
M24 C26 C 11.966 4.764 18
M24 C27 C 12.971 5.877 19
M24 C28 C 12.510 7.304 20
M24 C29 C 11.043 7.619 21
M24 O2P O 11.421 2.224 22
M24 "C3'" C 13.224 -3.637 23
M24 "O3'" O 14.439 -2.758 24
M24 C30 C 10.038 6.506 25
M24 C31 C 10.499 5.079 26
M24 C32 C 8.571 6.820 27
M24 N33 N 7.455 5.819 28
M24 O34 O 6.157 6.571 29
M24 C35 C 6.471 8.038 30
M24 N36 N 7.963 8.192 31
M24 C37 C 5.470 9.154 32
M24 C38 C 4.002 8.845 33
M24 C39 C 3.000 9.961 34
M24 O3P O 10.454 0.335 35
M24 "C4'" C 11.798 -3.171 36
M24 "O4'" O 10.915 -4.383 37
M24 C40 C 3.466 11.387 38
M24 C41 C 4.934 11.696 39
M24 C42 C 5.936 10.580 40
M24 F43 F 7.403 10.889 41
M24 "C5'" C 11.338 -1.744 42
M24 "O5'" O 12.343 -0.631 43
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
M24 "O5'" P SINGLE NONE 1
M24 P O1P DOUBLE NONE 2
M24 P O2P SINGLE NONE 3
M24 P O3P SINGLE BEGINDASH 4
M24 C2 N1 DOUBLE NONE 5
M24 N1 C6 SINGLE NONE 6
M24 C2 N3 SINGLE NONE 7
M24 N3 C4 DOUBLE NONE 8
M24 C4 C5 SINGLE NONE 9
M24 C4 N9 SINGLE NONE 10
M24 C6 C5 DOUBLE NONE 11
M24 C5 N7 SINGLE NONE 12
M24 C6 N6 SINGLE NONE 13
M24 N7 C8 DOUBLE NONE 14
M24 N9 C8 SINGLE NONE 15
M24 "C1'" N9 SINGLE BEGINDASH 16
M24 "C2'" "C1'" SINGLE NONE 17
M24 "C1'" "O4'" SINGLE NONE 18
M24 "C2'" "O2'" SINGLE BEGINWEDGE 19
M24 "C2'" "C3'" SINGLE NONE 20
M24 O25 C24 DOUBLE NONE 21
M24 C24 C26 SINGLE NONE 22
M24 C24 O2P SINGLE NONE 23
M24 C31 C26 SINGLE NONE 24
M24 C26 C27 DOUBLE NONE 25
M24 C27 C28 SINGLE NONE 26
M24 C29 C28 DOUBLE NONE 27
M24 C30 C29 SINGLE NONE 28
M24 "C3'" "O3'" SINGLE BEGINWEDGE 29
M24 "C3'" "C4'" SINGLE NONE 30
M24 C32 C30 SINGLE NONE 31
M24 C31 C30 DOUBLE NONE 32
M24 N33 C32 DOUBLE NONE 33
M24 C32 N36 SINGLE NONE 34
M24 O34 N33 SINGLE NONE 35
M24 O34 C35 SINGLE NONE 36
M24 C37 C35 SINGLE NONE 37
M24 C35 N36 DOUBLE NONE 38
M24 C38 C37 DOUBLE NONE 39
M24 C37 C42 SINGLE NONE 40
M24 C38 C39 SINGLE NONE 41
M24 C39 C40 DOUBLE NONE 42
M24 "O4'" "C4'" SINGLE NONE 43
M24 "C4'" "C5'" SINGLE BEGINDASH 44
M24 C40 C41 SINGLE NONE 45
M24 C42 C41 DOUBLE NONE 46
M24 C42 F43 SINGLE NONE 47
M24 "C5'" "O5'" SINGLE NONE 48
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
M24 MurckoScaffold S1 scaffold 'O=C(O[PH](=O)OC[C@@H]1CC[C@H](n2cnc3cncnc32)O1)c1cccc(-c2noc(-c3ccccc3)n2)c1' InChI=1S/C25H21N6O6P/c32-25(18-8-4-7-17(11-18)22-29-24(36-30-22)16-5-2-1-3-6-16)37-38(33)34-13-19-9-10-21(35-19)31-15-28-20-12-26-14-27-23(20)31/h1-8,11-12,14-15,19,21,38H,9-10,13H2/t19-,21+/m0/s1 NESUOGLPMJQQCC-PZJWPPBQSA-N
M24 adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
M24 imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
M24 isoxadiazole F3 fragment c1ncon1 InChI=1S/C2H2N2O/c1-3-2-5-4-1/h1-2H BBVIDBNAYOIXOE-UHFFFAOYSA-N
M24 phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
M24 phosphate F5 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
M24 purine F6 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
M24 pyrimidine F7 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
M24 ribose F8 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
M24 Z57791725 F9 fragment Cc1nc(-c2ccccc2)no1 InChI=1S/C9H8N2O/c1-7-10-9(11-12-7)8-5-3-2-4-6-8/h2-6H,1H3 VRRLZUXQTZOCKJ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
M24 P S1 1
M24 N1 S1 1
M24 C2 S1 1
M24 N3 S1 1
M24 C4 S1 1
M24 C5 S1 1
M24 C6 S1 1
M24 N7 S1 1
M24 C8 S1 1
M24 N9 S1 1
M24 "C1'" S1 1
M24 O1P S1 1
M24 "C2'" S1 1
M24 C24 S1 1
M24 O25 S1 1
M24 C26 S1 1
M24 C27 S1 1
M24 C28 S1 1
M24 C29 S1 1
M24 O2P S1 1
M24 "C3'" S1 1
M24 C30 S1 1
M24 C31 S1 1
M24 C32 S1 1
M24 N33 S1 1
M24 O34 S1 1
M24 C35 S1 1
M24 N36 S1 1
M24 C37 S1 1
M24 C38 S1 1
M24 C39 S1 1
M24 "C4'" S1 1
M24 "O4'" S1 1
M24 C40 S1 1
M24 C41 S1 1
M24 C42 S1 1
M24 "C5'" S1 1
M24 "O5'" S1 1
M24 N1 F1 1
M24 C6 F1 1
M24 C5 F1 1
M24 C4 F1 1
M24 N3 F1 1
M24 C2 F1 1
M24 N9 F1 1
M24 C8 F1 1
M24 N7 F1 1
M24 N6 F1 1
M24 C4 F2 1
M24 C5 F2 1
M24 N7 F2 1
M24 C8 F2 1
M24 N9 F2 1
M24 N33 F3 1
M24 C32 F3 1
M24 N36 F3 1
M24 C35 F3 1
M24 O34 F3 1
M24 C26 F4 1
M24 C31 F4 1
M24 C30 F4 1
M24 C29 F4 1
M24 C28 F4 1
M24 C27 F4 1
M24 C37 F4 2
M24 C38 F4 2
M24 C39 F4 2
M24 C40 F4 2
M24 C41 F4 2
M24 C42 F4 2
M24 O2P F5 1
M24 P F5 1
M24 O1P F5 1
M24 "O5'" F5 1
M24 O3P F5 1
M24 N7 F6 1
M24 C8 F6 1
M24 N9 F6 1
M24 C4 F6 1
M24 C5 F6 1
M24 C6 F6 1
M24 N1 F6 1
M24 C2 F6 1
M24 N3 F6 1
M24 C5 F7 1
M24 C4 F7 1
M24 N3 F7 1
M24 C2 F7 1
M24 N1 F7 1
M24 C6 F7 1
M24 "C2'" F8 1
M24 "C3'" F8 1
M24 "C4'" F8 1
M24 "O4'" F8 1
M24 "C1'" F8 1
M24 "C5'" F8 1
M24 "O5'" F8 1
M24 "O3'" F8 1
M24 "O2'" F8 1
M24 C37 F9 1
M24 C35 F9 1
M24 N36 F9 1
M24 C32 F9 1
M24 N33 F9 1
M24 O34 F9 1
M24 C30 F9 1
M24 C29 F9 1
M24 C28 F9 1
M24 C27 F9 1
M24 C26 F9 1
M24 C31 F9 1
#
_pdbe_chem_comp_rdkit_properties.comp_id M24
_pdbe_chem_comp_rdkit_properties.exactmw 613.112
_pdbe_chem_comp_rdkit_properties.amw 613.455
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 16
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 16
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 43
_pdbe_chem_comp_rdkit_properties.NumAtoms 64
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 18
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.200
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 5
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 269.552
_pdbe_chem_comp_rdkit_properties.tpsa 231.060
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.234
_pdbe_chem_comp_rdkit_properties.CrippenMR 136.040
_pdbe_chem_comp_rdkit_properties.chi0v 21.024
_pdbe_chem_comp_rdkit_properties.chi1v 12.352
_pdbe_chem_comp_rdkit_properties.chi2v 5.701
_pdbe_chem_comp_rdkit_properties.chi3v 5.701
_pdbe_chem_comp_rdkit_properties.chi4v 3.693
_pdbe_chem_comp_rdkit_properties.chi0n 41.130
_pdbe_chem_comp_rdkit_properties.chi1n 21.011
_pdbe_chem_comp_rdkit_properties.chi2n 4.997
_pdbe_chem_comp_rdkit_properties.chi3n 4.997
_pdbe_chem_comp_rdkit_properties.chi4n 3.166
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.640
_pdbe_chem_comp_rdkit_properties.kappa1 12.926
_pdbe_chem_comp_rdkit_properties.kappa2 11.216
_pdbe_chem_comp_rdkit_properties.kappa3 5.597
_pdbe_chem_comp_rdkit_properties.Phi 3.372
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
M24 UniChem PDBe M24
M24 UniChem ZINC ZINC000038142076
M24 UniChem PubChem 44517657
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
M24 P -1.289 0.697 2.814 ETKDGv3 1
M24 N1 -2.443 -2.397 -1.300 ETKDGv3 2
M24 C2 -2.110 -1.230 -0.796 ETKDGv3 3
M24 N3 -3.129 -0.257 -0.466 ETKDGv3 4
M24 C4 -4.368 -0.598 -0.649 ETKDGv3 5
M24 C5 -4.749 -1.845 -1.197 ETKDGv3 6
M24 C6 -3.826 -2.743 -1.540 ETKDGv3 7
M24 N6 -4.172 -3.990 -2.142 ETKDGv3 8
M24 N7 -6.154 -1.849 -1.402 ETKDGv3 9
M24 C8 -6.565 -0.681 -0.983 ETKDGv3 10
M24 N9 -5.534 0.186 -0.455 ETKDGv3 11
M24 "C1'" -5.612 1.648 -0.354 ETKDGv3 12
M24 O1P -1.232 1.130 4.263 ETKDGv3 13
M24 "C2'" -6.748 2.080 0.572 ETKDGv3 14
M24 "O2'" -7.269 3.332 0.183 ETKDGv3 15
M24 C24 0.983 2.006 2.031 ETKDGv3 16
M24 O25 0.476 3.072 2.478 ETKDGv3 17
M24 C26 2.318 2.024 1.392 ETKDGv3 18
M24 C27 3.030 3.163 1.300 ETKDGv3 19
M24 C28 4.359 3.162 0.657 ETKDGv3 20
M24 C29 4.866 2.030 0.159 ETKDGv3 21
M24 O2P 0.285 0.800 2.132 ETKDGv3 22
M24 "C3'" -6.069 2.140 1.920 ETKDGv3 23
M24 "O3'" -6.593 3.170 2.718 ETKDGv3 24
M24 C30 4.100 0.763 0.248 ETKDGv3 25
M24 C31 2.888 0.768 0.837 ETKDGv3 26
M24 C32 4.675 -0.480 -0.311 ETKDGv3 27
M24 N33 4.077 -1.628 -0.279 ETKDGv3 28
M24 O34 4.935 -2.502 -0.893 ETKDGv3 29
M24 C35 6.057 -1.787 -1.276 ETKDGv3 30
M24 N36 5.955 -0.541 -0.946 ETKDGv3 31
M24 C37 7.223 -2.368 -1.973 ETKDGv3 32
M24 C38 7.237 -3.680 -2.276 ETKDGv3 33
M24 C39 8.396 -4.276 -2.973 ETKDGv3 34
M24 O3P -1.811 -0.912 2.713 ETKDGv3 35
M24 "C4'" -4.599 2.393 1.558 ETKDGv3 36
M24 "O4'" -4.408 2.159 0.176 ETKDGv3 37
M24 C40 9.442 -3.513 -3.309 ETKDGv3 38
M24 C41 9.440 -2.074 -2.984 ETKDGv3 39
M24 C42 8.393 -1.526 -2.352 ETKDGv3 40
M24 F43 8.417 -0.200 -2.065 ETKDGv3 41
M24 "C5'" -3.650 1.503 2.368 ETKDGv3 42
M24 "O5'" -2.329 1.727 1.939 ETKDGv3 43
M24 H2 -1.068 -0.994 -0.629 ETKDGv3 44
M24 HN6 -5.168 -4.246 -2.323 ETKDGv3 45
M24 HN6A -3.422 -4.666 -2.407 ETKDGv3 46
M24 H8 -7.602 -0.383 -1.056 ETKDGv3 47
M24 "H1'" -5.764 2.065 -1.373 ETKDGv3 48
M24 "H2'" -7.582 1.347 0.590 ETKDGv3 49
M24 "HO2'" -6.520 3.983 0.145 ETKDGv3 50
M24 H27 2.648 4.097 1.692 ETKDGv3 51
M24 H28 4.922 4.084 0.590 ETKDGv3 52
M24 H29 5.842 2.048 -0.309 ETKDGv3 53
M24 "H3'" -6.205 1.155 2.428 ETKDGv3 54
M24 "HO3'" -6.203 3.047 3.623 ETKDGv3 55
M24 H31 2.315 -0.148 0.909 ETKDGv3 56
M24 H38 6.404 -4.321 -2.016 ETKDGv3 57
M24 H39 8.396 -5.332 -3.211 ETKDGv3 58
M24 HO3P -2.423 -1.036 3.482 ETKDGv3 59
M24 "H4'" -4.342 3.457 1.760 ETKDGv3 60
M24 H40 10.291 -3.949 -3.820 ETKDGv3 61
M24 H41 10.290 -1.463 -3.259 ETKDGv3 62
M24 "H5'" -3.761 1.757 3.447 ETKDGv3 63
M24 "H5'A" -3.942 0.441 2.202 ETKDGv3 64
#