data_M3A
#
_chem_comp.id M3A
_chem_comp.name 5-amino-3-[(4-cyanophenyl)amino]-N-phenyl-1H-1,2,4-triazole-1-carboxamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C16 H13 N7 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-03-19
_chem_comp.pdbx_modified_date 2020-03-20
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 319.321
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code M3A
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6OAV
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
M3A C4 C1 C 0 1 Y N N N N N 11.993 -5.993 -20.210 -3.313 0.989 -0.128 C4 M3A 1
M3A C5 C2 C 0 1 Y N N N N N 9.721 -5.384 -19.237 -0.942 0.578 0.054 C5 M3A 2
M3A C6 C3 C 0 1 Y N N N N N 7.769 -4.947 -18.607 0.136 -1.269 0.423 C6 M3A 3
M3A N1 N1 N 0 1 N N N N N N 11.060 -5.268 -19.420 -2.004 1.464 -0.119 N1 M3A 4
M3A C7 C4 C 0 1 N N N N N N 6.679 -7.060 -19.560 2.398 -0.420 0.213 C7 M3A 5
M3A C8 C5 C 0 1 Y N N N N N 6.067 -9.226 -20.651 4.570 0.493 -0.120 C8 M3A 6
M3A N2 N2 N 0 1 Y N N N N N 9.004 -4.443 -18.573 -1.058 -0.728 0.324 N2 M3A 7
M3A C9 C6 C 0 1 Y N N N N N 5.353 -10.026 -19.751 5.103 -0.670 -0.661 C9 M3A 8
M3A C10 C7 C 0 1 Y N N N N N 4.479 -11.003 -20.226 6.472 -0.822 -0.753 C10 M3A 9
M3A C11 C8 C 0 1 Y N N N N N 4.299 -11.191 -21.583 7.313 0.182 -0.308 C11 M3A 10
M3A C12 C9 C 0 1 Y N N N N N 5.003 -10.405 -22.476 6.785 1.341 0.231 C12 M3A 11
M3A N3 N3 N 0 1 N N N N N N 6.677 -4.384 -18.088 0.409 -2.594 0.694 N3 M3A 12
M3A C13 C10 C 0 1 Y N N N N N 5.877 -9.429 -22.017 5.416 1.502 0.321 C13 M3A 13
M3A C14 C11 C 0 1 Y N N N N N 13.335 -5.658 -20.030 -3.585 -0.286 -0.613 C14 M3A 14
M3A C15 C12 C 0 1 Y N N N N N 14.320 -6.302 -20.754 -4.878 -0.759 -0.624 C15 M3A 15
M3A N4 N4 N 0 1 Y N N N N N 7.766 -6.159 -19.278 1.057 -0.287 0.203 N4 M3A 16
M3A N N5 N 0 1 N N N N N N 15.821 -8.491 -23.045 -8.332 -0.833 -0.162 N M3A 17
M3A C C13 C 0 1 N N N N N N 15.016 -7.950 -22.436 -7.264 -0.445 -0.154 C M3A 18
M3A O O1 O 0 1 N N N N N N 5.538 -6.789 -19.177 2.900 -1.503 0.438 O M3A 19
M3A C1 C14 C 0 1 Y N N N N N 13.985 -7.287 -21.676 -5.918 0.043 -0.145 C1 M3A 20
M3A C2 C15 C 0 1 Y N N N N N 12.647 -7.626 -21.862 -5.641 1.324 0.342 C2 M3A 21
M3A C3 C16 C 0 1 Y N N N N N 11.659 -6.983 -21.132 -4.345 1.789 0.354 C3 M3A 22
M3A N5 N6 N 0 1 N N N N N N 6.983 -8.200 -20.261 3.183 0.650 -0.025 N5 M3A 23
M3A N6 N7 N 0 1 Y N N N N N 9.053 -6.433 -19.686 0.328 0.891 -0.029 N6 M3A 24
M3A H1 H1 H 0 1 N N N N N N 11.473 -4.524 -18.894 -1.831 2.412 -0.232 H1 M3A 25
M3A H2 H2 H 0 1 N N N N N N 5.479 -9.886 -18.688 4.447 -1.455 -1.008 H2 M3A 26
M3A H3 H3 H 0 1 N N N N N N 3.936 -11.620 -19.525 6.888 -1.726 -1.174 H3 M3A 27
M3A H4 H4 H 0 1 N N N N N N 3.615 -11.945 -21.943 8.383 0.061 -0.381 H4 M3A 28
M3A H5 H5 H 0 1 N N N N N N 4.872 -10.551 -23.538 7.444 2.125 0.574 H5 M3A 29
M3A H6 H6 H 0 1 N N N N N N 6.921 -3.513 -17.661 -0.318 -3.221 0.831 H6 M3A 30
M3A H7 H7 H 0 1 N N N N N N 6.008 -4.224 -18.814 1.329 -2.898 0.747 H7 M3A 31
M3A H8 H8 H 0 1 N N N N N N 6.416 -8.819 -22.727 5.005 2.407 0.742 H8 M3A 32
M3A H9 H9 H 0 1 N N N N N N 13.606 -4.890 -19.320 -2.781 -0.906 -0.983 H9 M3A 33
M3A H10 H10 H 0 1 N N N N N N 15.356 -6.039 -20.603 -5.089 -1.749 -1.001 H10 M3A 34
M3A H11 H11 H 0 1 N N N N N N 12.379 -8.391 -22.576 -6.442 1.947 0.712 H11 M3A 35
M3A H12 H12 H 0 1 N N N N N N 10.623 -7.251 -21.279 -4.131 2.778 0.731 H12 M3A 36
M3A H13 H13 H 0 1 N N N N N N 7.939 -8.325 -20.525 2.786 1.529 -0.130 H13 M3A 37
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
M3A N C TRIP N N 1
M3A C12 C13 DOUB Y N 2
M3A C12 C11 SING Y N 3
M3A C C1 SING N N 4
M3A C13 C8 SING Y N 5
M3A C2 C1 DOUB Y N 6
M3A C2 C3 SING Y N 7
M3A C1 C15 SING Y N 8
M3A C11 C10 DOUB Y N 9
M3A C3 C4 DOUB Y N 10
M3A C15 C14 DOUB Y N 11
M3A C8 N5 SING N N 12
M3A C8 C9 DOUB Y N 13
M3A N5 C7 SING N N 14
M3A C10 C9 SING Y N 15
M3A C4 C14 SING Y N 16
M3A C4 N1 SING N N 17
M3A N6 N4 SING Y N 18
M3A N6 C5 DOUB Y N 19
M3A C7 N4 SING N N 20
M3A C7 O DOUB N N 21
M3A N1 C5 SING N N 22
M3A N4 C6 SING Y N 23
M3A C5 N2 SING Y N 24
M3A C6 N2 DOUB Y N 25
M3A C6 N3 SING N N 26
M3A N1 H1 SING N N 27
M3A C9 H2 SING N N 28
M3A C10 H3 SING N N 29
M3A C11 H4 SING N N 30
M3A C12 H5 SING N N 31
M3A N3 H6 SING N N 32
M3A N3 H7 SING N N 33
M3A C13 H8 SING N N 34
M3A C14 H9 SING N N 35
M3A C15 H10 SING N N 36
M3A C2 H11 SING N N 37
M3A C3 H12 SING N N 38
M3A N5 H13 SING N N 39
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
M3A SMILES ACDLabs 12.01 "c1(ccc(C#N)cc1)Nc3nc(N)n(C(=O)Nc2ccccc2)n3"
M3A InChI InChI 1.03 InChI=1S/C16H13N7O/c17-10-11-6-8-13(9-7-11)19-15-21-14(18)23(22-15)16(24)20-12-4-2-1-3-5-12/h1-9H,(H,20,24)(H3,18,19,21,22)
M3A InChIKey InChI 1.03 CYMJSSGSRPDYFG-UHFFFAOYSA-N
M3A SMILES_CANONICAL CACTVS 3.385 "Nc1nc(Nc2ccc(cc2)C#N)nn1C(=O)Nc3ccccc3"
M3A SMILES CACTVS 3.385 "Nc1nc(Nc2ccc(cc2)C#N)nn1C(=O)Nc3ccccc3"
M3A SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)NC(=O)n2c(nc(n2)Nc3ccc(cc3)C#N)N"
M3A SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)NC(=O)n2c(nc(n2)Nc3ccc(cc3)C#N)N"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
M3A "SYSTEMATIC NAME" ACDLabs 12.01 5-amino-3-[(4-cyanophenyl)amino]-N-phenyl-1H-1,2,4-triazole-1-carboxamide
M3A "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 5-azanyl-3-[(4-cyanophenyl)amino]-~{N}-phenyl-1,2,4-triazole-1-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
M3A 'Create component' 2019-03-19 RCSB
M3A 'Initial release' 2020-03-25 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
M3A C4 C 4.299 -2.374 1
M3A C5 C 5.598 -0.124 2
M3A C6 C 7.972 0.380 3
M3A N1 N 4.299 -0.874 4
M3A C7 C 7.832 3.050 5
M3A C8 C 7.561 5.633 6
M3A N2 N 6.968 -0.734 7
M3A C9 C 9.052 5.790 8
M3A C10 C 9.662 7.161 9
M3A C11 C 8.781 8.374 10
M3A C12 C 7.289 8.217 11
M3A N3 N 9.464 0.224 12
M3A C13 C 6.679 6.847 13
M3A C14 C 3.000 -3.124 14
M3A C15 C 3.000 -4.624 15
M3A N4 N 7.222 1.679 16
M3A N N 4.299 -8.374 17
M3A C C 4.299 -6.874 18
M3A O O 9.324 3.207 19
M3A C1 C 4.299 -5.374 20
M3A C2 C 5.598 -4.624 21
M3A C3 C 5.598 -3.124 22
M3A N5 N 6.950 4.263 23
M3A N6 N 5.755 1.368 24
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
M3A N C TRIPLE NONE 1
M3A C12 C13 DOUBLE NONE 2
M3A C12 C11 SINGLE NONE 3
M3A C C1 SINGLE NONE 4
M3A C13 C8 SINGLE NONE 5
M3A C2 C1 DOUBLE NONE 6
M3A C2 C3 SINGLE NONE 7
M3A C1 C15 SINGLE NONE 8
M3A C11 C10 DOUBLE NONE 9
M3A C3 C4 DOUBLE NONE 10
M3A C15 C14 DOUBLE NONE 11
M3A C8 N5 SINGLE NONE 12
M3A C8 C9 DOUBLE NONE 13
M3A N5 C7 SINGLE NONE 14
M3A C10 C9 SINGLE NONE 15
M3A C4 C14 SINGLE NONE 16
M3A C4 N1 SINGLE NONE 17
M3A N6 N4 SINGLE NONE 18
M3A N6 C5 DOUBLE NONE 19
M3A C7 N4 SINGLE NONE 20
M3A C7 O DOUBLE NONE 21
M3A N1 C5 SINGLE NONE 22
M3A N4 C6 SINGLE NONE 23
M3A C5 N2 SINGLE NONE 24
M3A C6 N2 DOUBLE NONE 25
M3A C6 N3 SINGLE NONE 26
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
M3A MurckoScaffold S1 scaffold O=C(Nc1ccccc1)n1cnc(Nc2ccccc2)n1 InChI=1S/C15H13N5O/c21-15(18-13-9-5-2-6-10-13)20-11-16-14(19-20)17-12-7-3-1-4-8-12/h1-11H,(H,17,19)(H,18,21) YJWXGTDISMKUMQ-UHFFFAOYSA-N
M3A phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
M3A C4 S1 1
M3A C5 S1 1
M3A C6 S1 1
M3A N1 S1 1
M3A C7 S1 1
M3A C8 S1 1
M3A N2 S1 1
M3A C9 S1 1
M3A C10 S1 1
M3A C11 S1 1
M3A C12 S1 1
M3A C13 S1 1
M3A C14 S1 1
M3A C15 S1 1
M3A N4 S1 1
M3A O S1 1
M3A C1 S1 1
M3A C2 S1 1
M3A C3 S1 1
M3A N5 S1 1
M3A N6 S1 1
M3A C4 F1 1
M3A C3 F1 1
M3A C2 F1 1
M3A C1 F1 1
M3A C15 F1 1
M3A C14 F1 1
M3A C8 F1 2
M3A C13 F1 2
M3A C12 F1 2
M3A C11 F1 2
M3A C10 F1 2
M3A C9 F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id M3A
_pdbe_chem_comp_rdkit_properties.exactmw 319.118
_pdbe_chem_comp_rdkit_properties.amw 319.328
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 24
_pdbe_chem_comp_rdkit_properties.NumAtoms 37
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 8
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 155.593
_pdbe_chem_comp_rdkit_properties.tpsa 121.650
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.979
_pdbe_chem_comp_rdkit_properties.CrippenMR 86.171
_pdbe_chem_comp_rdkit_properties.chi0v 11.539
_pdbe_chem_comp_rdkit_properties.chi1v 6.114
_pdbe_chem_comp_rdkit_properties.chi2v 2.390
_pdbe_chem_comp_rdkit_properties.chi3v 2.390
_pdbe_chem_comp_rdkit_properties.chi4v 1.429
_pdbe_chem_comp_rdkit_properties.chi0n 24.539
_pdbe_chem_comp_rdkit_properties.chi1n 12.403
_pdbe_chem_comp_rdkit_properties.chi2n 2.390
_pdbe_chem_comp_rdkit_properties.chi3n 2.390
_pdbe_chem_comp_rdkit_properties.chi4n 1.429
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.860
_pdbe_chem_comp_rdkit_properties.kappa1 5.975
_pdbe_chem_comp_rdkit_properties.kappa2 6.495
_pdbe_chem_comp_rdkit_properties.kappa3 3.308
_pdbe_chem_comp_rdkit_properties.Phi 1.617
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
M3A UniChem PDBe M3A
M3A UniChem SureChEMBL SCHEMBL24339600
M3A UniChem PubChem 145998260
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
M3A C4 3.999 0.394 0.843 ETKDGv3 1
M3A C5 1.467 0.465 0.758 ETKDGv3 2
M3A C6 0.038 -0.561 -0.449 ETKDGv3 3
M3A N1 2.731 0.942 1.238 ETKDGv3 4
M3A C7 -2.044 0.583 0.567 ETKDGv3 5
M3A C8 -4.319 0.392 -0.529 ETKDGv3 6
M3A N2 1.321 -0.463 -0.324 ETKDGv3 7
M3A C9 -5.055 0.818 -1.571 ETKDGv3 8
M3A C10 -6.530 0.732 -1.533 ETKDGv3 9
M3A C11 -7.144 0.211 -0.464 ETKDGv3 10
M3A C12 -6.346 -0.288 0.674 ETKDGv3 11
M3A N3 -0.582 -1.483 -1.345 ETKDGv3 12
M3A C13 -5.010 -0.208 0.645 ETKDGv3 13
M3A C14 5.171 1.295 0.732 ETKDGv3 14
M3A C15 6.373 0.808 0.398 ETKDGv3 15
M3A N4 -0.654 0.250 0.493 ETKDGv3 16
M3A N 8.876 -1.571 -0.507 ETKDGv3 17
M3A C 7.836 -1.156 -0.216 ETKDGv3 18
M3A O -2.507 1.054 1.641 ETKDGv3 19
M3A C1 6.542 -0.639 0.146 ETKDGv3 20
M3A C2 5.491 -1.464 0.264 ETKDGv3 21
M3A C3 4.166 -0.927 0.639 ETKDGv3 22
M3A N5 -2.885 0.471 -0.590 ETKDGv3 23
M3A N6 0.341 0.890 1.232 ETKDGv3 24
M3A H1 2.731 1.805 1.828 ETKDGv3 25
M3A H2 -4.576 1.241 -2.445 ETKDGv3 26
M3A H3 -7.112 1.092 -2.371 ETKDGv3 27
M3A H4 -8.224 0.146 -0.435 ETKDGv3 28
M3A H5 -6.846 -0.730 1.527 ETKDGv3 29
M3A H6 -1.602 -1.693 -1.282 ETKDGv3 30
M3A H7 0.000 -2.031 -2.016 ETKDGv3 31
M3A H8 -4.441 -0.608 1.473 ETKDGv3 32
M3A H9 5.055 2.356 0.916 ETKDGv3 33
M3A H10 7.220 1.478 0.314 ETKDGv3 34
M3A H11 5.600 -2.528 0.092 ETKDGv3 35
M3A H12 3.347 -1.620 0.774 ETKDGv3 36
M3A H13 -2.429 0.546 -1.528 ETKDGv3 37
#