data_M5B
#
_chem_comp.id M5B
_chem_comp.name ~{N}-(1~{H}-imidazol-2-yl)thiophene-2-sulfonamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H7 N3 O2 S2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-10-03
_chem_comp.pdbx_modified_date 2020-02-28
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 229.279
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code M5B
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6T08
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
M5B CAC C1 C 0 1 Y N N N N N 22.769 -29.793 25.392 3.012 -1.104 -1.128 CAC M5B 1
M5B CAD C2 C 0 1 Y N N N N N 23.373 -29.837 26.664 2.687 -2.019 -0.213 CAD M5B 2
M5B CAE C3 C 0 1 Y N N N N N 23.346 -28.876 24.454 2.291 0.075 -1.056 CAE M5B 3
M5B CAF C4 C 0 1 Y N N N N N 22.317 -23.402 24.816 -3.464 -1.344 -0.544 CAF M5B 4
M5B CAG C5 C 0 1 Y N N N N N 23.032 -23.803 25.937 -2.813 -1.504 0.621 CAG M5B 5
M5B CAL C6 C 0 1 Y N N N N N 23.693 -24.910 24.227 -1.893 0.187 -0.372 CAL M5B 6
M5B CAM C7 C 0 1 Y N N N N N 24.434 -28.190 25.040 1.380 0.118 -0.082 CAM M5B 7
M5B NAH N1 N 0 1 N N N N N N 24.434 -25.851 23.418 -1.061 1.262 -0.637 NAH M5B 8
M5B NAI N2 N 0 1 Y N N N N N 22.752 -24.106 23.782 -2.885 -0.270 -1.182 NAI M5B 9
M5B NAJ N3 N 0 1 Y N N N N N 23.876 -24.739 25.525 -1.864 -0.558 0.708 NAJ M5B 10
M5B OAA O1 O 0 1 N N N N N N 26.416 -26.162 25.316 -0.065 1.367 1.618 OAA M5B 11
M5B OAB O2 O 0 1 N N N N N N 26.420 -27.706 23.110 0.960 2.633 -0.278 OAB M5B 12
M5B SAK S1 S 0 1 Y N N N N N 24.643 -28.728 26.630 1.398 -1.397 0.810 SAK M5B 13
M5B SAN S2 S 0 1 N N N N N N 25.463 -26.945 24.222 0.317 1.482 0.254 SAN M5B 14
M5B H1 H1 H 0 1 N N N N N N 21.922 -30.413 25.139 3.783 -1.270 -1.866 H1 M5B 15
M5B H2 H2 H 0 1 N N N N N N 23.080 -30.459 27.497 3.145 -2.992 -0.115 H2 M5B 16
M5B H3 H3 H 0 1 N N N N N N 22.998 -28.730 23.442 2.457 0.900 -1.733 H3 M5B 17
M5B H4 H4 H 0 1 N N N N N N 21.543 -22.649 24.792 -4.283 -1.945 -0.911 H4 M5B 18
M5B H5 H5 H 0 1 N N N N N N 22.922 -23.427 26.944 -3.019 -2.264 1.361 H5 M5B 19
M5B H6 H6 H 0 1 N N N N N N 24.997 -25.321 22.784 -1.285 1.885 -1.346 H6 M5B 20
M5B H7 H7 H 0 1 N N N N N N 22.426 -24.039 22.839 -3.135 0.090 -2.048 H7 M5B 21
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
M5B OAB SAN DOUB N N 1
M5B NAH SAN SING N N 2
M5B NAH CAL SING N N 3
M5B NAI CAL SING Y N 4
M5B NAI CAF SING Y N 5
M5B SAN CAM SING N N 6
M5B SAN OAA DOUB N N 7
M5B CAL NAJ DOUB Y N 8
M5B CAE CAM DOUB Y N 9
M5B CAE CAC SING Y N 10
M5B CAF CAG DOUB Y N 11
M5B CAM SAK SING Y N 12
M5B CAC CAD DOUB Y N 13
M5B NAJ CAG SING Y N 14
M5B SAK CAD SING Y N 15
M5B CAC H1 SING N N 16
M5B CAD H2 SING N N 17
M5B CAE H3 SING N N 18
M5B CAF H4 SING N N 19
M5B CAG H5 SING N N 20
M5B NAH H6 SING N N 21
M5B NAI H7 SING N N 22
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
M5B InChI InChI 1.03 InChI=1S/C7H7N3O2S2/c11-14(12,6-2-1-5-13-6)10-7-8-3-4-9-7/h1-5H,(H2,8,9,10)
M5B InChIKey InChI 1.03 ATSVZZXTTMVGSI-UHFFFAOYSA-N
M5B SMILES_CANONICAL CACTVS 3.385 O=[S](=O)(Nc1[nH]ccn1)c2sccc2
M5B SMILES CACTVS 3.385 O=[S](=O)(Nc1[nH]ccn1)c2sccc2
M5B SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1cc(sc1)S(=O)(=O)Nc2[nH]ccn2
M5B SMILES "OpenEye OEToolkits" 2.0.7 c1cc(sc1)S(=O)(=O)Nc2[nH]ccn2
#
_pdbx_chem_comp_identifier.comp_id M5B
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier ~{N}-(1~{H}-imidazol-2-yl)thiophene-2-sulfonamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
M5B 'Create component' 2019-10-03 PDBE
M5B 'Initial release' 2020-03-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
M5B CAC C 11.300 1.614 1
M5B CAD C 10.297 2.729 2
M5B CAE C 10.550 0.315 3
M5B CAF C 3.000 -0.917 4
M5B CAG C 3.463 0.509 5
M5B CAL C 5.427 -0.917 6
M5B CAM C 9.083 0.627 7
M5B NAH N 6.854 -1.381 8
M5B NAI N 4.213 -1.799 9
M5B NAJ N 4.963 0.509 10
M5B OAA O 6.965 0.738 11
M5B OAB O 8.972 -1.492 12
M5B SAK S 8.926 2.119 13
M5B SAN S 7.968 -0.377 14
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
M5B OAB SAN DOUBLE NONE 1
M5B NAH SAN SINGLE NONE 2
M5B NAH CAL SINGLE NONE 3
M5B NAI CAL SINGLE NONE 4
M5B NAI CAF SINGLE NONE 5
M5B SAN CAM SINGLE NONE 6
M5B SAN OAA DOUBLE NONE 7
M5B CAL NAJ DOUBLE NONE 8
M5B CAE CAM DOUBLE NONE 9
M5B CAE CAC SINGLE NONE 10
M5B CAF CAG DOUBLE NONE 11
M5B CAM SAK SINGLE NONE 12
M5B CAC CAD DOUBLE NONE 13
M5B NAJ CAG SINGLE NONE 14
M5B SAK CAD SINGLE NONE 15
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
M5B MurckoScaffold S1 scaffold 'O=S(=O)(Nc1ncc[nH]1)c1cccs1' InChI=1S/C7H7N3O2S2/c11-14(12,6-2-1-5-13-6)10-7-8-3-4-9-7/h1-5H,(H2,8,9,10) ATSVZZXTTMVGSI-UHFFFAOYSA-N
M5B imidazole F1 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
M5B thiophen F2 fragment c1ccsc1 InChI=1S/C4H4S/c1-2-4-5-3-1/h1-4H YTPLMLYBLZKORZ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
M5B CAC S1 1
M5B CAD S1 1
M5B CAE S1 1
M5B CAF S1 1
M5B CAG S1 1
M5B CAL S1 1
M5B CAM S1 1
M5B NAH S1 1
M5B NAI S1 1
M5B NAJ S1 1
M5B OAA S1 1
M5B OAB S1 1
M5B SAK S1 1
M5B SAN S1 1
M5B CAF F1 1
M5B CAG F1 1
M5B NAJ F1 1
M5B CAL F1 1
M5B NAI F1 1
M5B CAD F2 1
M5B CAC F2 1
M5B CAE F2 1
M5B CAM F2 1
M5B SAK F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id M5B
_pdbe_chem_comp_rdkit_properties.exactmw 228.998
_pdbe_chem_comp_rdkit_properties.amw 229.286
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 14
_pdbe_chem_comp_rdkit_properties.NumAtoms 21
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 94.819
_pdbe_chem_comp_rdkit_properties.tpsa 74.850
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.783
_pdbe_chem_comp_rdkit_properties.CrippenMR 53.461
_pdbe_chem_comp_rdkit_properties.chi0v 8.108
_pdbe_chem_comp_rdkit_properties.chi1v 5.503
_pdbe_chem_comp_rdkit_properties.chi2v 3.505
_pdbe_chem_comp_rdkit_properties.chi3v 3.505
_pdbe_chem_comp_rdkit_properties.chi4v 2.170
_pdbe_chem_comp_rdkit_properties.chi0n 13.475
_pdbe_chem_comp_rdkit_properties.chi1n 6.641
_pdbe_chem_comp_rdkit_properties.chi2n 1.157
_pdbe_chem_comp_rdkit_properties.chi3n 1.157
_pdbe_chem_comp_rdkit_properties.chi4n 0.656
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.340
_pdbe_chem_comp_rdkit_properties.kappa1 4.032
_pdbe_chem_comp_rdkit_properties.kappa2 3.428
_pdbe_chem_comp_rdkit_properties.kappa3 1.777
_pdbe_chem_comp_rdkit_properties.Phi 0.987
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
M5B UniChem PDBe M5B
M5B UniChem PubChem 63563533
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
M5B CAC -3.276 1.363 0.105 ETKDGv3 1
M5B CAD -3.248 0.425 1.049 ETKDGv3 2
M5B CAE -2.282 1.173 -0.974 ETKDGv3 3
M5B CAF 3.127 -0.358 1.693 ETKDGv3 4
M5B CAG 2.452 0.757 1.465 ETKDGv3 5
M5B CAL 1.704 -0.663 0.024 ETKDGv3 6
M5B CAM -1.524 0.091 -0.815 ETKDGv3 7
M5B NAH 0.966 -1.277 -1.035 ETKDGv3 8
M5B NAI 2.692 -1.350 0.780 ETKDGv3 9
M5B NAJ 1.533 0.567 0.391 ETKDGv3 10
M5B OAA 0.365 0.774 -2.582 ETKDGv3 11
M5B OAB -0.845 -1.324 -2.959 ETKDGv3 12
M5B SAK -1.983 -0.770 0.670 ETKDGv3 13
M5B SAN -0.256 -0.420 -1.913 ETKDGv3 14
M5B H1 -3.969 2.194 0.128 ETKDGv3 15
M5B H2 -3.900 0.401 1.912 ETKDGv3 16
M5B H3 -2.182 1.849 -1.812 ETKDGv3 17
M5B H4 3.886 -0.500 2.450 ETKDGv3 18
M5B H5 2.572 1.683 2.011 ETKDGv3 19
M5B H6 1.155 -2.275 -1.278 ETKDGv3 20
M5B H7 3.013 -2.339 0.690 ETKDGv3 21
#