data_M7O
#
_chem_comp.id M7O
_chem_comp.name "2-[(phenylmethyl)carbamoylamino]benzoic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H14 N2 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-01-06
_chem_comp.pdbx_modified_date 2017-02-10
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 270.283
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code M7O
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5MT4
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
M7O C3 C1 C 0 1 N N N N N N 9.203 11.174 7.650 -2.385 1.126 -0.481 C3 M7O 1
M7O C11 C2 C 0 1 Y N N N N N 7.804 8.104 10.528 -6.080 -0.884 0.259 C11 M7O 2
M7O C13 C3 C 0 1 Y N N N N N 7.002 8.507 9.442 -5.587 0.018 1.183 C13 M7O 3
M7O C15 C4 C 0 1 Y N N N N N 7.419 9.486 8.516 -4.391 0.669 0.943 C15 M7O 4
M7O C17 C5 C 0 1 N N N N N N 9.370 10.964 5.169 -0.012 0.776 -0.050 C17 M7O 5
M7O C21 C6 C 0 1 Y N N N N N 9.748 10.420 2.744 2.320 0.457 0.253 C21 M7O 6
M7O C22 C7 C 0 1 Y N N N N N 9.198 9.446 1.906 3.333 -0.496 0.064 C22 M7O 7
M7O C23 C8 C 0 1 Y N N N N N 9.125 9.670 0.494 4.650 -0.072 -0.136 C23 M7O 8
M7O C25 C9 C 0 1 Y N N N N N 9.585 10.882 -0.081 4.944 1.273 -0.149 C25 M7O 9
M7O C27 C10 C 0 1 Y N N N N N 10.154 11.851 0.761 3.941 2.211 0.038 C27 M7O 10
M7O C29 C11 C 0 1 Y N N N N N 10.225 11.637 2.152 2.635 1.809 0.231 C29 M7O 11
M7O N1 N1 N 0 1 N N N N N N 9.635 10.500 6.424 -1.280 0.335 0.067 N1 M7O 12
M7O C6 C12 C 0 1 Y N N N N N 8.683 10.111 8.662 -3.688 0.417 -0.220 C6 M7O 13
M7O C7 C13 C 0 1 Y N N N N N 9.473 9.752 9.772 -4.182 -0.485 -1.144 C7 M7O 14
M7O C9 C14 C 0 1 Y N N N N N 9.029 8.744 10.701 -5.378 -1.135 -0.905 C9 M7O 15
M7O O18 O1 O 0 1 N N N N N N 8.800 12.092 5.001 0.215 1.831 -0.610 O18 M7O 16
M7O N19 N2 N 0 1 N N N N N N 9.834 10.155 4.153 1.004 0.048 0.454 N19 M7O 17
M7O C31 C15 C 0 1 N N N N N N 8.650 8.157 2.454 3.011 -1.934 0.079 C31 M7O 18
M7O O32 O2 O 0 1 N N N N N N 8.759 7.774 3.618 4.000 -2.847 0.007 O32 M7O 19
M7O O33 O3 O 0 1 N N N N N N 7.973 7.417 1.580 1.854 -2.296 0.157 O33 M7O 20
M7O H1 H1 H 0 1 N N N N N N 10.052 11.717 8.090 -2.402 2.106 -0.004 H1 M7O 21
M7O H2 H2 H 0 1 N N N N N N 8.396 11.884 7.415 -2.246 1.248 -1.556 H2 M7O 22
M7O H3 H3 H 0 1 N N N N N N 7.480 7.326 11.203 -7.013 -1.395 0.448 H3 M7O 23
M7O H4 H4 H 0 1 N N N N N N 6.032 8.049 9.314 -6.135 0.214 2.092 H4 M7O 24
M7O H5 H5 H 0 1 N N N N N N 6.774 9.760 7.694 -4.005 1.373 1.665 H5 M7O 25
M7O H6 H6 H 0 1 N N N N N N 8.712 8.903 -0.144 5.435 -0.799 -0.282 H6 M7O 26
M7O H7 H7 H 0 1 N N N N N N 9.500 11.056 -1.143 5.962 1.599 -0.304 H7 M7O 27
M7O H8 H8 H 0 1 N N N N N N 10.540 12.767 0.339 4.182 3.264 0.027 H8 M7O 28
M7O H9 H9 H 0 1 N N N N N N 10.647 12.404 2.785 1.860 2.546 0.376 H9 M7O 29
M7O H10 H10 H 0 1 N N N N N N 10.155 9.650 6.512 -1.461 -0.507 0.513 H10 M7O 30
M7O H11 H11 H 0 1 N N N N N N 10.424 10.239 9.929 -3.633 -0.681 -2.053 H11 M7O 31
M7O H12 H12 H 0 1 N N N N N N 9.654 8.481 11.542 -5.761 -1.843 -1.625 H12 M7O 32
M7O H13 H13 H 0 1 N N N N N N 10.274 9.299 4.424 0.819 -0.760 0.957 H13 M7O 33
M7O H14 H14 H 0 1 N N N N N N 8.308 6.944 3.722 3.739 -3.778 0.020 H14 M7O 34
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
M7O C25 C23 DOUB Y N 1
M7O C25 C27 SING Y N 2
M7O C23 C22 SING Y N 3
M7O C27 C29 DOUB Y N 4
M7O O33 C31 DOUB N N 5
M7O C22 C31 SING N N 6
M7O C22 C21 DOUB Y N 7
M7O C29 C21 SING Y N 8
M7O C31 O32 SING N N 9
M7O C21 N19 SING N N 10
M7O N19 C17 SING N N 11
M7O O18 C17 DOUB N N 12
M7O C17 N1 SING N N 13
M7O N1 C3 SING N N 14
M7O C3 C6 SING N N 15
M7O C15 C6 DOUB Y N 16
M7O C15 C13 SING Y N 17
M7O C6 C7 SING Y N 18
M7O C13 C11 DOUB Y N 19
M7O C7 C9 DOUB Y N 20
M7O C11 C9 SING Y N 21
M7O C3 H1 SING N N 22
M7O C3 H2 SING N N 23
M7O C11 H3 SING N N 24
M7O C13 H4 SING N N 25
M7O C15 H5 SING N N 26
M7O C23 H6 SING N N 27
M7O C25 H7 SING N N 28
M7O C27 H8 SING N N 29
M7O C29 H9 SING N N 30
M7O N1 H10 SING N N 31
M7O C7 H11 SING N N 32
M7O C9 H12 SING N N 33
M7O N19 H13 SING N N 34
M7O O32 H14 SING N N 35
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
M7O InChI InChI 1.03 InChI=1S/C15H14N2O3/c18-14(19)12-8-4-5-9-13(12)17-15(20)16-10-11-6-2-1-3-7-11/h1-9H,10H2,(H,18,19)(H2,16,17,20)
M7O InChIKey InChI 1.03 QCLRLHJAKXQKSY-UHFFFAOYSA-N
M7O SMILES_CANONICAL CACTVS 3.385 OC(=O)c1ccccc1NC(=O)NCc2ccccc2
M7O SMILES CACTVS 3.385 OC(=O)c1ccccc1NC(=O)NCc2ccccc2
M7O SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 c1ccc(cc1)CNC(=O)Nc2ccccc2C(=O)O
M7O SMILES "OpenEye OEToolkits" 2.0.6 c1ccc(cc1)CNC(=O)Nc2ccccc2C(=O)O
#
_pdbx_chem_comp_identifier.comp_id M7O
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier "2-[(phenylmethyl)carbamoylamino]benzoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
M7O 'Create component' 2017-01-06 RCSB
M7O 'Initial release' 2017-02-15 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
M7O C3 C 10.301 1.500 1
M7O C11 C 10.301 6.000 2
M7O C13 C 11.600 5.250 3
M7O C15 C 11.600 3.750 4
M7O C17 C 9.002 -0.750 5
M7O C21 C 7.702 -3.000 6
M7O C22 C 6.404 -3.750 7
M7O C23 C 6.404 -5.250 8
M7O C25 C 7.702 -6.000 9
M7O C27 C 9.002 -5.250 10
M7O C29 C 9.002 -3.750 11
M7O N1 N 9.002 0.750 12
M7O C6 C 10.301 3.000 13
M7O C7 C 9.002 3.750 14
M7O C9 C 9.002 5.250 15
M7O O18 O 10.301 -1.500 16
M7O N19 N 7.702 -1.500 17
M7O C31 C 5.104 -3.000 18
M7O O32 O 5.104 -1.500 19
M7O O33 O 3.805 -3.750 20
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
M7O C25 C23 SINGLE NONE 1
M7O C25 C27 DOUBLE NONE 2
M7O C23 C22 DOUBLE NONE 3
M7O C27 C29 SINGLE NONE 4
M7O O33 C31 DOUBLE NONE 5
M7O C22 C31 SINGLE NONE 6
M7O C22 C21 SINGLE NONE 7
M7O C29 C21 DOUBLE NONE 8
M7O C31 O32 SINGLE NONE 9
M7O C21 N19 SINGLE NONE 10
M7O N19 C17 SINGLE NONE 11
M7O O18 C17 DOUBLE NONE 12
M7O C17 N1 SINGLE NONE 13
M7O N1 C3 SINGLE NONE 14
M7O C3 C6 SINGLE NONE 15
M7O C15 C6 DOUBLE NONE 16
M7O C15 C13 SINGLE NONE 17
M7O C6 C7 SINGLE NONE 18
M7O C13 C11 DOUBLE NONE 19
M7O C7 C9 DOUBLE NONE 20
M7O C11 C9 SINGLE NONE 21
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
M7O MurckoScaffold S1 scaffold O=C(NCc1ccccc1)Nc1ccccc1 InChI=1S/C14H14N2O/c17-14(16-13-9-5-2-6-10-13)15-11-12-7-3-1-4-8-12/h1-10H,11H2,(H2,15,16,17) XXFBRXQVPJVXFB-UHFFFAOYSA-N
M7O phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
M7O C3 S1 1
M7O C11 S1 1
M7O C13 S1 1
M7O C15 S1 1
M7O C17 S1 1
M7O C21 S1 1
M7O C22 S1 1
M7O C23 S1 1
M7O C25 S1 1
M7O C27 S1 1
M7O C29 S1 1
M7O N1 S1 1
M7O C6 S1 1
M7O C7 S1 1
M7O C9 S1 1
M7O O18 S1 1
M7O N19 S1 1
M7O C11 F1 1
M7O C13 F1 1
M7O C15 F1 1
M7O C6 F1 1
M7O C7 F1 1
M7O C9 F1 1
M7O C21 F1 2
M7O C22 F1 2
M7O C23 F1 2
M7O C25 F1 2
M7O C27 F1 2
M7O C29 F1 2
#
_pdbe_chem_comp_rdkit_properties.comp_id M7O
_pdbe_chem_comp_rdkit_properties.exactmw 270.100
_pdbe_chem_comp_rdkit_properties.amw 270.288
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 20
_pdbe_chem_comp_rdkit_properties.NumAtoms 34
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.067
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 135.673
_pdbe_chem_comp_rdkit_properties.tpsa 78.430
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.216
_pdbe_chem_comp_rdkit_properties.CrippenMR 74.346
_pdbe_chem_comp_rdkit_properties.chi0v 9.619
_pdbe_chem_comp_rdkit_properties.chi1v 5.007
_pdbe_chem_comp_rdkit_properties.chi2v 1.843
_pdbe_chem_comp_rdkit_properties.chi3v 1.843
_pdbe_chem_comp_rdkit_properties.chi4v 1.068
_pdbe_chem_comp_rdkit_properties.chi0n 23.619
_pdbe_chem_comp_rdkit_properties.chi1n 11.809
_pdbe_chem_comp_rdkit_properties.chi2n 1.843
_pdbe_chem_comp_rdkit_properties.chi3n 1.843
_pdbe_chem_comp_rdkit_properties.chi4n 1.068
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.820
_pdbe_chem_comp_rdkit_properties.kappa1 4.343
_pdbe_chem_comp_rdkit_properties.kappa2 6.377
_pdbe_chem_comp_rdkit_properties.kappa3 3.585
_pdbe_chem_comp_rdkit_properties.Phi 1.385
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
M7O UniChem ChEMBL CHEMBL561499
M7O UniChem PDBe M7O
M7O UniChem PubChem 45267877
M7O UniChem BindingDb 50236213
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
M7O C3 2.411 -1.962 -0.428 ETKDGv3 1
M7O C11 3.299 1.870 1.384 ETKDGv3 2
M7O C13 2.793 0.883 2.133 ETKDGv3 3
M7O C15 2.507 -0.435 1.528 ETKDGv3 4
M7O C17 -0.068 -1.522 -0.699 ETKDGv3 5
M7O C21 -2.336 -0.489 -1.007 ETKDGv3 6
M7O C22 -2.318 0.609 0.017 ETKDGv3 7
M7O C23 -3.479 0.987 0.586 ETKDGv3 8
M7O C25 -4.757 0.381 0.163 ETKDGv3 9
M7O C27 -4.774 -0.545 -0.800 ETKDGv3 10
M7O C29 -3.511 -0.998 -1.412 ETKDGv3 11
M7O N1 1.221 -1.799 -1.260 ETKDGv3 12
M7O C6 2.763 -0.652 0.225 ETKDGv3 13
M7O C7 3.323 0.448 -0.599 ETKDGv3 14
M7O C9 3.576 1.642 -0.048 ETKDGv3 15
M7O O18 -0.270 -1.690 0.536 ETKDGv3 16
M7O N19 -1.122 -1.040 -1.540 ETKDGv3 17
M7O C31 -1.074 1.338 0.360 ETKDGv3 18
M7O O32 -0.959 1.991 1.585 ETKDGv3 19
M7O O33 -0.121 1.398 -0.462 ETKDGv3 20
M7O H1 2.239 -2.764 0.323 ETKDGv3 21
M7O H2 3.263 -2.285 -1.064 ETKDGv3 22
M7O H3 3.504 2.836 1.826 ETKDGv3 23
M7O H4 2.585 1.049 3.182 ETKDGv3 24
M7O H5 2.077 -1.213 2.146 ETKDGv3 25
M7O H6 -3.507 1.782 1.321 ETKDGv3 26
M7O H7 -5.683 0.706 0.620 ETKDGv3 27
M7O H8 -5.713 -0.979 -1.119 ETKDGv3 28
M7O H9 -3.539 -1.787 -2.152 ETKDGv3 29
M7O H10 1.336 -1.780 -2.298 ETKDGv3 30
M7O H11 3.521 0.290 -1.652 ETKDGv3 31
M7O H12 3.982 2.444 -0.652 ETKDGv3 32
M7O H13 -1.055 -1.207 -2.570 ETKDGv3 33
M7O H14 -0.115 2.496 1.827 ETKDGv3 34
#