data_M7Y
#
_chem_comp.id M7Y
_chem_comp.name (2E)-3-[2-(3-cyclopentyl-5,5-dimethyl-2-oxoimidazolidin-1-yl)phenyl]-N-hydroxyprop-2-enamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C19 H25 N3 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-03-27
_chem_comp.pdbx_modified_date 2020-03-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 343.420
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code M7Y
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6ODC
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
M7Y C4 C1 C 0 1 Y N N N N N 121.672 -5.788 -52.809 -0.590 -1.983 0.119 C4 M7Y 1
M7Y C5 C2 C 0 1 Y N N N N N 121.602 -7.215 -52.698 -1.863 -1.396 0.218 C5 M7Y 2
M7Y C6 C3 C 0 1 Y N N N N N 120.325 -7.770 -52.925 -2.976 -2.203 0.477 C6 M7Y 3
M7Y C7 C4 C 0 1 N N N N N N 122.675 -8.197 -52.290 -2.023 0.054 0.053 C7 M7Y 4
M7Y C8 C5 C 0 1 N N N N N N 122.847 -9.412 -52.917 -3.249 0.613 0.149 C8 M7Y 5
M7Y C17 C6 C 0 1 N N N N N N 123.775 -4.857 -53.774 1.049 -0.861 -1.472 C17 M7Y 6
M7Y C21 C7 C 0 1 N N N N N N 125.400 -3.289 -50.730 3.309 0.835 1.074 C21 M7Y 7
M7Y C22 C8 C 0 1 N N N N N N 125.549 -1.795 -51.098 4.731 0.371 0.696 C22 M7Y 8
M7Y C24 C9 C 0 1 N N N N N N 125.839 -2.160 -48.678 4.614 2.733 0.181 C24 M7Y 9
M7Y C1 C10 C 0 1 Y N N N N N 119.230 -7.000 -53.269 -2.818 -3.563 0.631 C1 M7Y 10
M7Y C2 C11 C 0 1 Y N N N N N 119.348 -5.634 -53.392 -1.561 -4.137 0.533 C2 M7Y 11
M7Y C3 C12 C 0 1 Y N N N N N 120.565 -5.044 -53.166 -0.452 -3.355 0.272 C3 M7Y 12
M7Y C9 C13 C 0 1 N N N N N N 123.824 -10.433 -52.504 -3.409 2.057 -0.016 C9 M7Y 13
M7Y N10 N1 N 0 1 N N N N N N 123.901 -11.601 -53.157 -4.632 2.615 0.080 N10 M7Y 14
M7Y O11 O1 O 0 1 N N N N N N 124.831 -12.565 -52.671 -4.786 4.014 -0.079 O11 M7Y 15
M7Y O12 O2 O 0 1 N N N N N N 124.589 -10.343 -51.549 -2.437 2.756 -0.240 O12 M7Y 16
M7Y N13 N2 N 0 1 N N N N N N 122.841 -5.074 -52.653 0.528 -1.192 -0.138 N13 M7Y 17
M7Y C14 C14 C 0 1 N N N N N N 123.307 -4.531 -51.523 1.299 -0.612 0.792 C14 M7Y 18
M7Y N15 N3 N 0 1 N N N N N N 124.504 -3.950 -51.691 2.316 0.099 0.288 N15 M7Y 19
M7Y C16 C15 C 0 1 N N N N N N 124.923 -4.107 -53.088 2.276 0.025 -1.180 C16 M7Y 20
M7Y C18 C16 C 0 1 N N N N N N 123.124 -4.064 -54.928 0.006 -0.085 -2.279 C18 M7Y 21
M7Y C19 C17 C 0 1 N N N N N N 124.320 -6.159 -54.363 1.469 -2.131 -2.215 C19 M7Y 22
M7Y O20 O3 O 0 1 N N N N N N 122.684 -4.593 -50.479 1.093 -0.721 1.985 O20 M7Y 23
M7Y C23 C18 C 0 1 N N N N N N 125.667 -1.051 -49.748 5.200 1.405 -0.358 C23 M7Y 24
M7Y C25 C19 C 0 1 N N N N N N 124.951 -3.288 -49.249 3.234 2.336 0.747 C25 M7Y 25
M7Y H1 H1 H 0 1 N N N N N N 120.198 -8.838 -52.826 -3.958 -1.761 0.555 H1 M7Y 26
M7Y H2 H2 H 0 1 N N N N N N 123.333 -7.936 -51.475 -1.161 0.674 -0.146 H2 M7Y 27
M7Y H3 H3 H 0 1 N N N N N N 122.222 -9.630 -53.770 -4.111 -0.006 0.348 H3 M7Y 28
M7Y H4 H4 H 0 1 N N N N N N 126.394 -3.756 -50.785 3.135 0.675 2.138 H4 M7Y 29
M7Y H5 H5 H 0 1 N N N N N N 126.452 -1.636 -51.705 5.384 0.394 1.569 H5 M7Y 30
M7Y H6 H6 H 0 1 N N N N N N 124.667 -1.446 -51.654 4.705 -0.629 0.264 H6 M7Y 31
M7Y H7 H7 H 0 1 N N N N N N 126.889 -2.479 -48.596 5.248 3.137 0.970 H7 M7Y 32
M7Y H8 H8 H 0 1 N N N N N N 125.479 -1.826 -47.693 4.503 3.457 -0.626 H8 M7Y 33
M7Y H9 H9 H 0 1 N N N N N N 118.275 -7.473 -53.443 -3.678 -4.185 0.831 H9 M7Y 34
M7Y H10 H10 H 0 1 N N N N N N 118.492 -5.034 -53.663 -1.447 -5.204 0.656 H10 M7Y 35
M7Y H11 H11 H 0 1 N N N N N N 120.660 -3.973 -53.270 0.524 -3.811 0.197 H11 M7Y 36
M7Y H12 H12 H 0 1 N N N N N N 123.328 -11.789 -53.955 -5.406 2.059 0.259 H12 M7Y 37
M7Y H13 H13 H 0 1 N N N N N N 125.285 -12.214 -51.914 -5.699 4.321 0.007 H13 M7Y 38
M7Y H14 H14 H 0 1 N N N N N N 125.854 -4.690 -53.148 3.184 -0.439 -1.565 H14 M7Y 39
M7Y H15 H15 H 0 1 N N N N N N 125.075 -3.124 -53.557 2.141 1.018 -1.610 H15 M7Y 40
M7Y H16 H16 H 0 1 N N N N N N 122.719 -3.117 -54.541 0.443 0.236 -3.224 H16 M7Y 41
M7Y H17 H17 H 0 1 N N N N N N 123.880 -3.851 -55.699 -0.853 -0.727 -2.476 H17 M7Y 42
M7Y H18 H18 H 0 1 N N N N N N 122.309 -4.658 -55.367 -0.316 0.788 -1.712 H18 M7Y 43
M7Y H19 H19 H 0 1 N N N N N N 124.793 -6.753 -53.567 2.174 -2.693 -1.604 H19 M7Y 44
M7Y H20 H20 H 0 1 N N N N N N 123.494 -6.734 -54.808 0.590 -2.744 -2.413 H20 M7Y 45
M7Y H21 H21 H 0 1 N N N N N N 125.065 -5.927 -55.139 1.942 -1.860 -3.159 H21 M7Y 46
M7Y H22 H22 H 0 1 N N N N N N 126.540 -0.382 -49.753 6.288 1.451 -0.398 H22 M7Y 47
M7Y H23 H23 H 0 1 N N N N N N 124.757 -0.465 -49.551 4.786 1.170 -1.339 H23 M7Y 48
M7Y H24 H24 H 0 1 N N N N N N 123.881 -3.050 -49.150 2.459 2.518 0.002 H24 M7Y 49
M7Y H25 H25 H 0 1 N N N N N N 125.159 -4.252 -48.762 3.024 2.906 1.652 H25 M7Y 50
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
M7Y C18 C17 SING N N 1
M7Y C19 C17 SING N N 2
M7Y C17 C16 SING N N 3
M7Y C17 N13 SING N N 4
M7Y C2 C1 DOUB Y N 5
M7Y C2 C3 SING Y N 6
M7Y C1 C6 SING Y N 7
M7Y C3 C4 DOUB Y N 8
M7Y N10 O11 SING N N 9
M7Y N10 C9 SING N N 10
M7Y C16 N15 SING N N 11
M7Y C6 C5 DOUB Y N 12
M7Y C8 C9 SING N N 13
M7Y C8 C7 DOUB N E 14
M7Y C4 C5 SING Y N 15
M7Y C4 N13 SING N N 16
M7Y C5 C7 SING N N 17
M7Y N13 C14 SING N N 18
M7Y C9 O12 DOUB N N 19
M7Y N15 C14 SING N N 20
M7Y N15 C21 SING N N 21
M7Y C14 O20 DOUB N N 22
M7Y C22 C21 SING N N 23
M7Y C22 C23 SING N N 24
M7Y C21 C25 SING N N 25
M7Y C23 C24 SING N N 26
M7Y C25 C24 SING N N 27
M7Y C6 H1 SING N N 28
M7Y C7 H2 SING N N 29
M7Y C8 H3 SING N N 30
M7Y C21 H4 SING N N 31
M7Y C22 H5 SING N N 32
M7Y C22 H6 SING N N 33
M7Y C24 H7 SING N N 34
M7Y C24 H8 SING N N 35
M7Y C1 H9 SING N N 36
M7Y C2 H10 SING N N 37
M7Y C3 H11 SING N N 38
M7Y N10 H12 SING N N 39
M7Y O11 H13 SING N N 40
M7Y C16 H14 SING N N 41
M7Y C16 H15 SING N N 42
M7Y C18 H16 SING N N 43
M7Y C18 H17 SING N N 44
M7Y C18 H18 SING N N 45
M7Y C19 H19 SING N N 46
M7Y C19 H20 SING N N 47
M7Y C19 H21 SING N N 48
M7Y C23 H22 SING N N 49
M7Y C23 H23 SING N N 50
M7Y C25 H24 SING N N 51
M7Y C25 H25 SING N N 52
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
M7Y SMILES ACDLabs 12.01 c1(c([C@H]=CC(=O)NO)cccc1)N3C(CN(C2CCCC2)C3=O)(C)C
M7Y InChI InChI 1.03 InChI=1S/C19H25N3O3/c1-19(2)13-21(15-8-4-5-9-15)18(24)22(19)16-10-6-3-7-14(16)11-12-17(23)20-25/h3,6-7,10-12,15,25H,4-5,8-9,13H2,1-2H3,(H,20,23)/b12-11+
M7Y InChIKey InChI 1.03 ILHJFGLWWDTUKY-VAWYXSNFSA-N
M7Y SMILES_CANONICAL CACTVS 3.385 CC1(C)CN(C2CCCC2)C(=O)N1c3ccccc3/C=C/C(=O)NO
M7Y SMILES CACTVS 3.385 CC1(C)CN(C2CCCC2)C(=O)N1c3ccccc3C=CC(=O)NO
M7Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CC1(CN(C(=O)N1c2ccccc2/C=C/C(=O)NO)C3CCCC3)C
M7Y SMILES "OpenEye OEToolkits" 2.0.7 CC1(CN(C(=O)N1c2ccccc2C=CC(=O)NO)C3CCCC3)C
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
M7Y "SYSTEMATIC NAME" ACDLabs 12.01 (2E)-3-[2-(3-cyclopentyl-5,5-dimethyl-2-oxoimidazolidin-1-yl)phenyl]-N-hydroxyprop-2-enamide
M7Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 (~{E})-3-[2-(3-cyclopentyl-5,5-dimethyl-2-oxidanylidene-imidazolidin-1-yl)phenyl]-~{N}-oxidanyl-prop-2-enamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
M7Y 'Create component' 2019-03-27 RCSB
M7Y 'Initial release' 2020-04-01 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
M7Y C4 C 11.600 -2.165 1
M7Y C5 C 10.301 -2.915 2
M7Y C6 C 10.301 -4.415 3
M7Y C7 C 9.002 -2.165 4
M7Y C8 C 7.702 -2.915 5
M7Y C17 C 12.813 0.217 6
M7Y C21 C 9.968 2.857 7
M7Y C22 C 10.431 4.283 8
M7Y C24 C 8.004 4.283 9
M7Y C1 C 11.600 -5.165 10
M7Y C2 C 12.899 -4.415 11
M7Y C3 C 12.899 -2.915 12
M7Y C9 C 6.404 -2.165 13
M7Y N10 N 5.104 -2.915 14
M7Y O11 O 3.805 -2.165 15
M7Y O12 O 6.404 -0.665 16
M7Y N13 N 11.600 -0.665 17
M7Y C14 C 10.386 0.217 18
M7Y N15 N 10.850 1.643 19
M7Y C16 C 12.350 1.643 20
M7Y C18 C 14.240 0.680 21
M7Y C19 C 13.695 -0.997 22
M7Y O20 O 8.960 -0.247 23
M7Y C23 C 9.218 5.165 24
M7Y C25 C 8.468 2.857 25
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
M7Y C18 C17 SINGLE NONE 1
M7Y C19 C17 SINGLE NONE 2
M7Y C17 C16 SINGLE NONE 3
M7Y C17 N13 SINGLE NONE 4
M7Y C2 C1 DOUBLE NONE 5
M7Y C2 C3 SINGLE NONE 6
M7Y C1 C6 SINGLE NONE 7
M7Y C3 C4 DOUBLE NONE 8
M7Y N10 O11 SINGLE NONE 9
M7Y N10 C9 SINGLE NONE 10
M7Y C16 N15 SINGLE NONE 11
M7Y C6 C5 DOUBLE NONE 12
M7Y C8 C9 SINGLE ENDDOWNRIGHT 13
M7Y C8 C7 DOUBLE NONE 14
M7Y C4 C5 SINGLE NONE 15
M7Y C4 N13 SINGLE NONE 16
M7Y C5 C7 SINGLE ENDDOWNRIGHT 17
M7Y N13 C14 SINGLE NONE 18
M7Y C9 O12 DOUBLE NONE 19
M7Y N15 C14 SINGLE NONE 20
M7Y N15 C21 SINGLE NONE 21
M7Y C14 O20 DOUBLE NONE 22
M7Y C22 C21 SINGLE NONE 23
M7Y C22 C23 SINGLE NONE 24
M7Y C21 C25 SINGLE NONE 25
M7Y C23 C24 SINGLE NONE 26
M7Y C25 C24 SINGLE NONE 27
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
M7Y MurckoScaffold S1 scaffold O=C1N(c2ccccc2)CCN1C1CCCC1 InChI=1S/C14H18N2O/c17-14-15(12-6-2-1-3-7-12)10-11-16(14)13-8-4-5-9-13/h1-3,6-7,13H,4-5,8-11H2 DPWLGQAAQLHWJT-UHFFFAOYSA-N
M7Y amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
M7Y cyclopentane F2 fragment C1CCCC1 InChI=1S/C5H10/c1-2-4-5-3-1/h1-5H2 RGSFGYAAUTVSQA-UHFFFAOYSA-N
M7Y phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
M7Y C4 S1 1
M7Y C5 S1 1
M7Y C6 S1 1
M7Y C17 S1 1
M7Y C21 S1 1
M7Y C22 S1 1
M7Y C24 S1 1
M7Y C1 S1 1
M7Y C2 S1 1
M7Y C3 S1 1
M7Y N13 S1 1
M7Y C14 S1 1
M7Y N15 S1 1
M7Y C16 S1 1
M7Y O20 S1 1
M7Y C23 S1 1
M7Y C25 S1 1
M7Y N10 F1 1
M7Y C9 F1 1
M7Y O12 F1 1
M7Y C8 F1 1
M7Y C21 F2 1
M7Y C22 F2 1
M7Y C23 F2 1
M7Y C24 F2 1
M7Y C25 F2 1
M7Y C4 F3 1
M7Y C3 F3 1
M7Y C2 F3 1
M7Y C1 F3 1
M7Y C6 F3 1
M7Y C5 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id M7Y
_pdbe_chem_comp_rdkit_properties.exactmw 343.190
_pdbe_chem_comp_rdkit_properties.amw 343.427
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 25
_pdbe_chem_comp_rdkit_properties.NumAtoms 50
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.474
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 182.884
_pdbe_chem_comp_rdkit_properties.tpsa 72.880
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.733
_pdbe_chem_comp_rdkit_properties.CrippenMR 95.231
_pdbe_chem_comp_rdkit_properties.chi0v 12.066
_pdbe_chem_comp_rdkit_properties.chi1v 6.406
_pdbe_chem_comp_rdkit_properties.chi2v 2.908
_pdbe_chem_comp_rdkit_properties.chi3v 2.908
_pdbe_chem_comp_rdkit_properties.chi4v 1.945
_pdbe_chem_comp_rdkit_properties.chi0n 37.066
_pdbe_chem_comp_rdkit_properties.chi1n 18.762
_pdbe_chem_comp_rdkit_properties.chi2n 2.908
_pdbe_chem_comp_rdkit_properties.chi3n 2.908
_pdbe_chem_comp_rdkit_properties.chi4n 1.945
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.340
_pdbe_chem_comp_rdkit_properties.kappa1 4.311
_pdbe_chem_comp_rdkit_properties.kappa2 6.879
_pdbe_chem_comp_rdkit_properties.kappa3 3.395
_pdbe_chem_comp_rdkit_properties.Phi 1.186
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
M7Y UniChem PDBe M7Y
M7Y UniChem PubChem 146014939
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
M7Y C4 -1.224 -1.878 0.587 ETKDGv3 1
M7Y C5 -2.412 -1.011 0.859 ETKDGv3 2
M7Y C6 -3.482 -1.547 1.483 ETKDGv3 3
M7Y C7 -2.378 0.422 0.476 ETKDGv3 4
M7Y C8 -3.465 1.106 0.090 ETKDGv3 5
M7Y C17 0.244 -1.448 -1.511 ETKDGv3 6
M7Y C21 2.895 0.979 -0.145 ETKDGv3 7
M7Y C22 2.331 2.328 0.314 ETKDGv3 8
M7Y C24 3.771 1.517 2.078 ETKDGv3 9
M7Y C1 -3.486 -2.970 1.878 ETKDGv3 10
M7Y C2 -2.421 -3.738 1.632 ETKDGv3 11
M7Y C3 -1.238 -3.167 0.963 ETKDGv3 12
M7Y C9 -3.424 2.524 -0.321 ETKDGv3 13
M7Y N10 -2.207 3.171 -0.714 ETKDGv3 14
M7Y O11 -2.194 4.502 -0.967 ETKDGv3 15
M7Y O12 -4.504 3.173 -0.349 ETKDGv3 16
M7Y N13 -0.065 -1.350 -0.077 ETKDGv3 17
M7Y C14 0.882 -0.495 0.525 ETKDGv3 18
M7Y N15 1.825 0.008 -0.402 ETKDGv3 19
M7Y C16 1.519 -0.556 -1.712 ETKDGv3 20
M7Y C18 -0.929 -0.909 -2.351 ETKDGv3 21
M7Y C19 0.538 -2.909 -1.892 ETKDGv3 22
M7Y O20 0.878 -0.206 1.752 ETKDGv3 23
M7Y C23 3.233 2.789 1.446 ETKDGv3 24
M7Y C25 3.855 0.497 0.950 ETKDGv3 25
M7Y H1 -4.345 -0.946 1.736 ETKDGv3 26
M7Y H2 -1.418 0.913 0.482 ETKDGv3 27
M7Y H3 -4.432 0.620 0.079 ETKDGv3 28
M7Y H4 3.477 1.140 -1.081 ETKDGv3 29
M7Y H5 1.291 2.228 0.693 ETKDGv3 30
M7Y H6 2.331 3.067 -0.517 ETKDGv3 31
M7Y H7 3.061 1.160 2.855 ETKDGv3 32
M7Y H8 4.765 1.689 2.545 ETKDGv3 33
M7Y H9 -4.353 -3.387 2.374 ETKDGv3 34
M7Y H10 -2.423 -4.779 1.927 ETKDGv3 35
M7Y H11 -0.379 -3.801 0.782 ETKDGv3 36
M7Y H12 -1.334 2.626 -0.889 ETKDGv3 37
M7Y H13 -1.931 4.920 -0.107 ETKDGv3 38
M7Y H14 2.392 -1.146 -2.067 ETKDGv3 39
M7Y H15 1.341 0.271 -2.435 ETKDGv3 40
M7Y H16 -1.847 -1.508 -2.172 ETKDGv3 41
M7Y H17 -0.683 -0.957 -3.434 ETKDGv3 42
M7Y H18 -1.140 0.149 -2.088 ETKDGv3 43
M7Y H19 -0.371 -3.536 -1.774 ETKDGv3 44
M7Y H20 1.340 -3.322 -1.243 ETKDGv3 45
M7Y H21 0.870 -2.973 -2.951 ETKDGv3 46
M7Y H22 4.077 3.384 1.033 ETKDGv3 47
M7Y H23 2.676 3.404 2.186 ETKDGv3 48
M7Y H24 3.605 -0.521 1.321 ETKDGv3 49
M7Y H25 4.893 0.474 0.552 ETKDGv3 50
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