data_MB9
#
_chem_comp.id MB9
_chem_comp.name "(4R)-7-chloro-9-methyl-1-oxo-1,2,4,9-tetrahydrospiro[beta-carboline-3,4'-piperidine]-4-carbonitrile"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C17 H17 Cl N4 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-05-01
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 328.796
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code MB9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3CY2
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MB9 C1K C1K C 0 1 N N N N N N -15.253 33.874 -0.924 -3.690 -1.269 0.308 C1K MB9 1
MB9 C1I C1I C 0 1 N N N N N N -14.200 33.623 -2.004 -4.942 -0.582 -0.240 C1I MB9 2
MB9 N1M N1M N 0 1 N N N N N N -13.423 34.848 -2.374 -4.859 -0.507 -1.705 N1M MB9 3
MB9 C1J C1J C 0 1 N N N N N N -14.259 36.025 -2.653 -3.701 0.291 -2.130 C1J MB9 4
MB9 C1L C1L C 0 1 N N N N N N -15.208 36.314 -1.496 -2.413 -0.370 -1.635 C1L MB9 5
MB9 C1W C1W C 0 1 N N N N N N -16.093 35.095 -1.161 -2.450 -0.466 -0.105 C1W MB9 6
MB9 N1N N1N N 0 1 N N N N N N -16.892 34.857 -2.386 -2.541 0.879 0.459 N1N MB9 7
MB9 C1O C1O C 0 1 N N N N N N -17.955 35.686 -2.686 -1.463 1.684 0.588 C1O MB9 8
MB9 O1C O1C O 0 1 N N N N N N -18.544 35.466 -3.741 -1.581 2.859 0.877 O1C MB9 9
MB9 C1Q C1Q C 0 1 Y N N N N N -18.506 36.504 -1.705 -0.140 1.077 0.364 C1Q MB9 10
MB9 N1V N1V N 0 1 Y N N N N N -19.487 37.411 -1.726 1.096 1.663 0.253 N1V MB9 11
MB9 C1A C1A C 0 1 N N N N N N -20.197 37.845 -2.946 1.373 3.099 0.343 C1A MB9 12
MB9 C1T C1T C 0 1 Y N N N N N -19.715 37.917 -0.511 2.023 0.683 0.046 C1T MB9 13
MB9 C1H C1H C 0 1 Y N N N N N -20.591 38.905 -0.052 3.403 0.740 -0.140 C1H MB9 14
MB9 C1P C1P C 0 1 Y N N N N N -20.593 39.202 1.307 4.063 -0.463 -0.329 C1P MB9 15
MB9 CL1D CL1D CL 0 0 N N N N N N -21.702 40.405 1.877 5.782 -0.450 -0.566 CL1D MB9 16
MB9 C1F C1F C 0 1 Y N N N N N -19.736 38.558 2.207 3.394 -1.679 -0.334 C1F MB9 17
MB9 C1G C1G C 0 1 Y N N N N N -18.834 37.614 1.736 2.038 -1.767 -0.153 C1G MB9 18
MB9 C1S C1S C 0 1 Y N N N N N -18.826 37.298 0.382 1.339 -0.565 0.042 C1S MB9 19
MB9 C1R C1R C 0 1 Y N N N N N -18.060 36.402 -0.370 -0.009 -0.287 0.255 C1R MB9 20
MB9 C1U C1U C 0 1 N N R N N N -16.952 35.429 0.047 -1.198 -1.205 0.378 C1U MB9 21
MB9 C1E C1E C 0 1 N N N N N N -17.561 34.221 0.631 -1.372 -1.601 1.785 C1E MB9 22
MB9 N1B N1B N 0 1 N N N N N N -18.056 33.289 1.038 -1.506 -1.907 2.871 N1B MB9 23
MB9 H1K H1K H 0 1 N N N N N N -15.923 33.002 -0.894 -3.747 -1.316 1.396 H1K MB9 24
MB9 H1KA H1KA H 0 0 N N N N N N -14.712 34.036 0.020 -3.621 -2.279 -0.097 H1KA MB9 25
MB9 H1I H1I H 0 1 N N N N N N -13.493 32.870 -1.626 -5.825 -1.154 0.044 H1I MB9 26
MB9 H1IA H1IA H 0 0 N N N N N N -14.732 33.288 -2.907 -5.013 0.425 0.171 H1IA MB9 27
MB9 HN1M HN1M H 0 0 N N N N N N -12.818 35.073 -1.610 -4.832 -1.429 -2.113 HN1M MB9 28
MB9 H1J H1J H 0 1 N N N N N N -13.607 36.897 -2.805 -3.683 0.353 -3.218 H1J MB9 29
MB9 H1JA H1JA H 0 0 N N N N N N -14.858 35.823 -3.553 -3.779 1.294 -1.711 H1JA MB9 30
MB9 H1L H1L H 0 1 N N N N N N -14.613 36.572 -0.608 -2.331 -1.370 -2.060 H1L MB9 31
MB9 H1LA H1LA H 0 0 N N N N N N -15.866 37.144 -1.792 -1.556 0.229 -1.941 H1LA MB9 32
MB9 HN1N HN1N H 0 0 N N N N N N -16.662 34.097 -2.994 -3.406 1.205 0.752 HN1N MB9 33
MB9 H1A H1A H 0 1 N N N N N N -21.270 37.953 -2.728 1.575 3.366 1.380 H1A MB9 34
MB9 H1AA H1AA H 0 0 N N N N N N -19.792 38.811 -3.281 2.241 3.341 -0.270 H1AA MB9 35
MB9 H1AB H1AB H 0 0 N N N N N N -20.058 37.094 -3.738 0.509 3.659 -0.014 H1AB MB9 36
MB9 H1H H1H H 0 1 N N N N N N -21.248 39.424 -0.734 3.934 1.680 -0.138 H1H MB9 37
MB9 H1F H1F H 0 1 N N N N N N -19.776 38.794 3.260 3.960 -2.585 -0.487 H1F MB9 38
MB9 H1G H1G H 0 1 N N N N N N -18.146 37.130 2.414 1.530 -2.720 -0.160 H1G MB9 39
MB9 H1U H1U H 0 1 N N N N N N -16.304 35.888 0.808 -1.039 -2.092 -0.235 H1U MB9 40
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MB9 C1K C1I SING N N 1
MB9 C1K C1W SING N N 2
MB9 C1I N1M SING N N 3
MB9 N1M C1J SING N N 4
MB9 C1J C1L SING N N 5
MB9 C1L C1W SING N N 6
MB9 C1W N1N SING N N 7
MB9 C1W C1U SING N N 8
MB9 N1N C1O SING N N 9
MB9 C1O O1C DOUB N N 10
MB9 C1O C1Q SING N N 11
MB9 C1Q N1V SING Y N 12
MB9 C1Q C1R DOUB Y N 13
MB9 N1V C1A SING N N 14
MB9 N1V C1T SING Y N 15
MB9 C1T C1H DOUB Y N 16
MB9 C1T C1S SING Y N 17
MB9 C1H C1P SING Y N 18
MB9 C1P CL1D SING N N 19
MB9 C1P C1F DOUB Y N 20
MB9 C1F C1G SING Y N 21
MB9 C1G C1S DOUB Y N 22
MB9 C1S C1R SING Y N 23
MB9 C1R C1U SING N N 24
MB9 C1U C1E SING N N 25
MB9 C1E N1B TRIP N N 26
MB9 C1K H1K SING N N 27
MB9 C1K H1KA SING N N 28
MB9 C1I H1I SING N N 29
MB9 C1I H1IA SING N N 30
MB9 N1M HN1M SING N N 31
MB9 C1J H1J SING N N 32
MB9 C1J H1JA SING N N 33
MB9 C1L H1L SING N N 34
MB9 C1L H1LA SING N N 35
MB9 N1N HN1N SING N N 36
MB9 C1A H1A SING N N 37
MB9 C1A H1AA SING N N 38
MB9 C1A H1AB SING N N 39
MB9 C1H H1H SING N N 40
MB9 C1F H1F SING N N 41
MB9 C1G H1G SING N N 42
MB9 C1U H1U SING N N 43
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MB9 SMILES ACDLabs 10.04 "Clc4ccc3c(n(c2C(=O)NC1(CCNCC1)C(C#N)c23)C)c4"
MB9 SMILES_CANONICAL CACTVS 3.341 "Cn1c2cc(Cl)ccc2c3[C@@H](C#N)C4(CCNCC4)NC(=O)c13"
MB9 SMILES CACTVS 3.341 "Cn1c2cc(Cl)ccc2c3[CH](C#N)C4(CCNCC4)NC(=O)c13"
MB9 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cn1c2cc(ccc2c3c1C(=O)NC4([C@@H]3C#N)CCNCC4)Cl"
MB9 SMILES "OpenEye OEToolkits" 1.5.0 "Cn1c2cc(ccc2c3c1C(=O)NC4(C3C#N)CCNCC4)Cl"
MB9 InChI InChI 1.03 InChI=1S/C17H17ClN4O/c1-22-13-8-10(18)2-3-11(13)14-12(9-19)17(4-6-20-7-5-17)21-16(23)15(14)22/h2-3,8,12,20H,4-7H2,1H3,(H,21,23)/t12-/m1/s1
MB9 InChIKey InChI 1.03 LPFQFJAOMCGYCP-GFCCVEGCSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MB9 "SYSTEMATIC NAME" ACDLabs 10.04 "(4R)-7-chloro-9-methyl-1-oxo-1,2,4,9-tetrahydrospiro[beta-carboline-3,4'-piperidine]-4-carbonitrile"
MB9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(4R)-7-chloro-9-methyl-1-oxo-spiro[2,4-dihydropyrido[5,4-b]indole-3,4'-piperidine]-4-carbonitrile"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MB9 'Create component' 2008-05-01 RCSB
MB9 'Modify aromatic_flag' 2011-06-04 RCSB
MB9 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id MB9
_pdbe_chem_comp_drugbank_details.drugbank_id DB08166
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name
"(4R)-7-chloro-9-methyl-1-oxo-1,2,4,9-tetrahydrospiro[beta-carboline-3,4'-piperidine]-4-carbonitrile"
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id MB9
_pdbe_chem_comp_drugbank_classification.drugbank_id DB08166
_pdbe_chem_comp_drugbank_classification.parent 'Beta carbolines'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Indoles and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organoheterocyclic compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as beta carbolines. These are compounds containing a 9H-pyrido[3,4-b]indole moiety.'
#
_pdbe_chem_comp_drugbank_targets.comp_id MB9
_pdbe_chem_comp_drugbank_targets.drugbank_id DB08166
_pdbe_chem_comp_drugbank_targets.name 'Serine/threonine-protein kinase pim-1'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P11309
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
MB9 C1K C 6.812 -2.261 1
MB9 C1I C 6.812 -3.761 2
MB9 N1M N 8.111 -4.511 3
MB9 C1J C 9.410 -3.761 4
MB9 C1L C 9.410 -2.261 5
MB9 C1W C 8.111 -1.511 6
MB9 N1N N 9.410 -0.761 7
MB9 C1O C 9.410 0.739 8
MB9 O1C O 10.709 1.489 9
MB9 C1Q C 8.111 1.489 10
MB9 N1V N 7.797 2.947 11
MB9 C1A C 8.799 4.063 12
MB9 C1T C 6.314 3.101 13
MB9 C1H C 5.422 4.372 14
MB9 C1P C 3.876 4.223 15
MB9 CL1D Cl 3.000 5.441 16
MB9 C1F C 3.243 2.805 17
MB9 C1G C 4.165 1.555 18
MB9 C1S C 5.707 1.740 19
MB9 C1R C 6.812 0.739 20
MB9 C1U C 6.812 -0.761 21
MB9 C1E C 5.513 -1.511 22
MB9 N1B N 4.214 -2.261 23
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
MB9 C1K C1I SINGLE NONE 1
MB9 C1K C1W SINGLE NONE 2
MB9 C1I N1M SINGLE NONE 3
MB9 N1M C1J SINGLE NONE 4
MB9 C1J C1L SINGLE NONE 5
MB9 C1L C1W SINGLE NONE 6
MB9 C1W N1N SINGLE NONE 7
MB9 C1W C1U SINGLE NONE 8
MB9 N1N C1O SINGLE NONE 9
MB9 C1O O1C DOUBLE NONE 10
MB9 C1O C1Q SINGLE NONE 11
MB9 C1Q N1V SINGLE NONE 12
MB9 C1Q C1R DOUBLE NONE 13
MB9 N1V C1A SINGLE NONE 14
MB9 N1V C1T SINGLE NONE 15
MB9 C1T C1H DOUBLE NONE 16
MB9 C1T C1S SINGLE NONE 17
MB9 C1H C1P SINGLE NONE 18
MB9 C1P CL1D SINGLE NONE 19
MB9 C1P C1F DOUBLE NONE 20
MB9 C1F C1G SINGLE NONE 21
MB9 C1G C1S DOUBLE NONE 22
MB9 C1S C1R SINGLE NONE 23
MB9 C1R C1U SINGLE NONE 24
MB9 C1U C1E SINGLE BEGINDASH 25
MB9 C1E N1B TRIPLE NONE 26
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
MB9 MurckoScaffold S1 scaffold 'O=C1NC2(CCNCC2)Cc2c1[nH]c1ccccc21' InChI=1S/C15H17N3O/c19-14-13-11(10-3-1-2-4-12(10)17-13)9-15(18-14)5-7-16-8-6-15/h1-4,16-17H,5-9H2,(H,18,19) HPQDGZCGUUXLGN-UHFFFAOYSA-N
MB9 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
MB9 indole F2 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
MB9 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
MB9 pyrrole F4 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
MB9 Z278081414 F5 fragment CC(=O)NC1CCNCC1.Cl 'InChI=1S/C7H14N2O.ClH/c1-6(10)9-7-2-4-8-5-3-7;/h7-8H,2-5H2,1H3,(H,9,10);1H' PWMUODAZHNQADN-UHFFFAOYSA-N
MB9 Z1184857743 F6 fragment Cn1ccc2c1C(=O)NCC2 InChI=1S/C8H10N2O/c1-10-5-3-6-2-4-9-8(11)7(6)10/h3,5H,2,4H2,1H3,(H,9,11) LMPBEJNRWDIXKS-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
MB9 C1K S1 1
MB9 C1I S1 1
MB9 N1M S1 1
MB9 C1J S1 1
MB9 C1L S1 1
MB9 C1W S1 1
MB9 N1N S1 1
MB9 C1O S1 1
MB9 O1C S1 1
MB9 C1Q S1 1
MB9 N1V S1 1
MB9 C1T S1 1
MB9 C1H S1 1
MB9 C1P S1 1
MB9 C1F S1 1
MB9 C1G S1 1
MB9 C1S S1 1
MB9 C1R S1 1
MB9 C1U S1 1
MB9 N1N F1 1
MB9 C1O F1 1
MB9 O1C F1 1
MB9 C1Q F1 1
MB9 C1T F2 1
MB9 C1S F2 1
MB9 C1R F2 1
MB9 C1Q F2 1
MB9 N1V F2 1
MB9 C1G F2 1
MB9 C1F F2 1
MB9 C1P F2 1
MB9 C1H F2 1
MB9 C1T F3 1
MB9 C1H F3 1
MB9 C1P F3 1
MB9 C1F F3 1
MB9 C1G F3 1
MB9 C1S F3 1
MB9 C1Q F4 1
MB9 C1R F4 1
MB9 C1S F4 1
MB9 C1T F4 1
MB9 N1V F4 1
MB9 CL1D F5 1
MB9 C1Q F5 1
MB9 C1O F5 1
MB9 O1C F5 1
MB9 N1N F5 1
MB9 C1W F5 1
MB9 C1K F5 1
MB9 C1I F5 1
MB9 N1M F5 1
MB9 C1J F5 1
MB9 C1L F5 1
MB9 C1A F6 1
MB9 N1V F6 1
MB9 C1T F6 1
MB9 C1S F6 1
MB9 C1R F6 1
MB9 C1U F6 1
MB9 C1W F6 1
MB9 N1N F6 1
MB9 C1O F6 1
MB9 O1C F6 1
MB9 C1Q F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id MB9
_pdbe_chem_comp_rdkit_properties.exactmw 328.109
_pdbe_chem_comp_rdkit_properties.amw 328.803
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 5
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 1
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 23
_pdbe_chem_comp_rdkit_properties.NumAtoms 40
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.412
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 1
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 162.763
_pdbe_chem_comp_rdkit_properties.tpsa 69.850
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.767
_pdbe_chem_comp_rdkit_properties.CrippenMR 85.846
_pdbe_chem_comp_rdkit_properties.chi0v 11.831
_pdbe_chem_comp_rdkit_properties.chi1v 6.560
_pdbe_chem_comp_rdkit_properties.chi2v 3.666
_pdbe_chem_comp_rdkit_properties.chi3v 3.666
_pdbe_chem_comp_rdkit_properties.chi4v 2.684
_pdbe_chem_comp_rdkit_properties.chi0n 28.075
_pdbe_chem_comp_rdkit_properties.chi1n 14.576
_pdbe_chem_comp_rdkit_properties.chi2n 3.477
_pdbe_chem_comp_rdkit_properties.chi3n 3.477
_pdbe_chem_comp_rdkit_properties.chi4n 2.548
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.030
_pdbe_chem_comp_rdkit_properties.kappa1 4.982
_pdbe_chem_comp_rdkit_properties.kappa2 4.985
_pdbe_chem_comp_rdkit_properties.kappa3 1.919
_pdbe_chem_comp_rdkit_properties.Phi 1.080
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
MB9 UniChem DrugBank DB08166
MB9 UniChem PDBe MB9
MB9 UniChem ZINC ZINC000024980601
MB9 UniChem PubChem 24851689
MB9 UniChem 'Probes And Drugs' PD004683
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
MB9 C1K -3.106 -0.267 -0.979 ETKDGv3 1
MB9 C1I -3.822 1.087 -0.871 ETKDGv3 2
MB9 N1M -4.202 1.413 0.519 ETKDGv3 3
MB9 C1J -3.337 0.797 1.544 ETKDGv3 4
MB9 C1L -1.886 0.673 1.066 ETKDGv3 5
MB9 C1W -1.759 -0.269 -0.178 ETKDGv3 6
MB9 N1N -1.473 -1.639 0.306 ETKDGv3 7
MB9 C1O -0.153 -1.994 0.751 ETKDGv3 8
MB9 O1C 0.043 -3.085 1.347 ETKDGv3 9
MB9 C1Q 0.950 -1.061 0.469 ETKDGv3 10
MB9 N1V 2.316 -1.170 0.917 ETKDGv3 11
MB9 C1A 2.946 -2.346 1.509 ETKDGv3 12
MB9 C1T 2.981 -0.100 0.245 ETKDGv3 13
MB9 C1H 4.283 0.208 0.242 ETKDGv3 14
MB9 C1P 4.719 1.370 -0.582 ETKDGv3 15
MB9 CL1D 6.413 1.823 -0.609 ETKDGv3 16
MB9 C1F 3.819 2.070 -1.308 ETKDGv3 17
MB9 C1G 2.381 1.689 -1.296 ETKDGv3 18
MB9 C1S 2.025 0.654 -0.533 ETKDGv3 19
MB9 C1R 0.744 -0.007 -0.329 ETKDGv3 20
MB9 C1U -0.552 0.222 -1.065 ETKDGv3 21
MB9 C1E -0.460 -0.500 -2.348 ETKDGv3 22
MB9 N1B -0.386 -1.066 -3.354 ETKDGv3 23
MB9 H1K -2.968 -0.521 -2.049 ETKDGv3 24
MB9 H1KA -3.799 -1.036 -0.575 ETKDGv3 25
MB9 H1I -3.160 1.888 -1.263 ETKDGv3 26
MB9 H1IA -4.730 1.072 -1.514 ETKDGv3 27
MB9 HN1M -5.181 1.081 0.684 ETKDGv3 28
MB9 H1J -3.365 1.428 2.458 ETKDGv3 29
MB9 H1JA -3.722 -0.211 1.821 ETKDGv3 30
MB9 H1L -1.527 1.699 0.827 ETKDGv3 31
MB9 H1LA -1.258 0.307 1.907 ETKDGv3 32
MB9 HN1N -2.242 -2.335 0.428 ETKDGv3 33
MB9 H1A 3.943 -2.089 1.920 ETKDGv3 34
MB9 H1AA 3.058 -3.138 0.739 ETKDGv3 35
MB9 H1AB 2.330 -2.725 2.350 ETKDGv3 36
MB9 H1H 5.003 -0.362 0.812 ETKDGv3 37
MB9 H1F 4.138 2.912 -1.909 ETKDGv3 38
MB9 H1G 1.655 2.227 -1.891 ETKDGv3 39
MB9 H1U -0.661 1.304 -1.294 ETKDGv3 40
#