data_MBN
#
_chem_comp.id MBN
_chem_comp.name TOLUENE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H8"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 92.138
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code MBN
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1JLX
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MBN C C C 0 1 N N N N N N 48.787 87.978 27.427 0.000 0.001 2.432 C MBN 1
MBN C1 C1 C 0 1 Y N N N N N 48.336 86.589 27.713 0.000 0.001 0.925 C1 MBN 2
MBN C2 C2 C 0 1 Y N N N N N 49.158 85.719 28.393 1.197 -0.000 0.234 C2 MBN 3
MBN C3 C3 C 0 1 Y N N N N N 48.748 84.430 28.680 1.197 -0.000 -1.147 C3 MBN 4
MBN C4 C4 C 0 1 Y N N N N N 47.492 84.003 28.279 0.000 0.000 -1.838 C4 MBN 5
MBN C5 C5 C 0 1 Y N N N N N 46.667 84.868 27.599 -1.197 0.001 -1.147 C5 MBN 6
MBN C6 C6 C 0 1 Y N N N N N 47.092 86.156 27.319 -1.197 -0.003 0.234 C6 MBN 7
MBN H1 1H H 0 1 N N N N N N 48.121 88.682 26.876 0.889 -0.514 2.796 H1 MBN 8
MBN H2A 2H H 0 1 N N N N N N 49.084 88.455 28.389 0.001 1.028 2.796 H2A MBN 9
MBN H3A 3H H 0 1 N N N N N N 49.763 87.926 26.891 -0.890 -0.511 2.796 H3A MBN 10
MBN H2 H2 H 0 1 N N N N N N 50.157 86.059 28.711 2.132 -0.001 0.774 H2 MBN 11
MBN H3 H3 H 0 1 N N N N N N 49.419 83.746 29.225 2.132 -0.001 -1.687 H3 MBN 12
MBN H4 H4 H 0 1 N N N N N N 47.150 82.978 28.500 0.000 0.001 -2.918 H4 MBN 13
MBN H5 H5 H 0 1 N N N N N N 45.667 84.529 27.279 -2.132 0.002 -1.687 H5 MBN 14
MBN H6 H6 H 0 1 N N N N N N 46.428 86.848 26.773 -2.132 -0.002 0.774 H6 MBN 15
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MBN C C1 SING N N 1
MBN C H1 SING N N 2
MBN C H2A SING N N 3
MBN C H3A SING N N 4
MBN C1 C2 DOUB Y N 5
MBN C1 C6 SING Y N 6
MBN C2 C3 SING Y N 7
MBN C2 H2 SING N N 8
MBN C3 C4 DOUB Y N 9
MBN C3 H3 SING N N 10
MBN C4 C5 SING Y N 11
MBN C4 H4 SING N N 12
MBN C5 C6 DOUB Y N 13
MBN C5 H5 SING N N 14
MBN C6 H6 SING N N 15
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MBN SMILES ACDLabs 10.04 c1ccccc1C
MBN SMILES_CANONICAL CACTVS 3.341 Cc1ccccc1
MBN SMILES CACTVS 3.341 Cc1ccccc1
MBN SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 Cc1ccccc1
MBN SMILES "OpenEye OEToolkits" 1.5.0 Cc1ccccc1
MBN InChI InChI 1.03 InChI=1S/C7H8/c1-7-5-3-2-4-6-7/h2-6H,1H3
MBN InChIKey InChI 1.03 YXFVVABEGXRONW-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MBN "SYSTEMATIC NAME" ACDLabs 10.04 methylbenzene
MBN "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 methylbenzene
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MBN 'Create component' 1999-07-08 EBI
MBN 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id MBN
_pdbe_chem_comp_drugbank_details.drugbank_id DB11558
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Toluene
_pdbe_chem_comp_drugbank_details.description
'Toluene is a colorless, liquid that is immiscible in water. It is a mono-substituted benzene derivative used in veterinary medicine as a treatment for various parasites in dogs and cats.'
_pdbe_chem_comp_drugbank_details.cas_number 108-88-3
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id MBN
_pdbe_chem_comp_drugbank_classification.drugbank_id DB11558
_pdbe_chem_comp_drugbank_classification.parent Toluenes
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Benzene and substituted derivatives'
_pdbe_chem_comp_drugbank_classification.superclass Benzenoids
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as toluenes. These are compounds containing a benzene ring which bears a methane group.'
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
MBN C C 4.299 2.250 1
MBN C1 C 4.299 0.750 2
MBN C2 C 3.000 0.000 3
MBN C3 C 3.000 -1.500 4
MBN C4 C 4.299 -2.250 5
MBN C5 C 5.598 -1.500 6
MBN C6 C 5.598 0.000 7
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
MBN C C1 SINGLE NONE 1
MBN C1 C2 DOUBLE NONE 2
MBN C1 C6 SINGLE NONE 3
MBN C2 C3 SINGLE NONE 4
MBN C3 C4 DOUBLE NONE 5
MBN C4 C5 SINGLE NONE 6
MBN C5 C6 DOUBLE NONE 7
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
MBN MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
MBN phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
MBN C1 S1 1
MBN C2 S1 1
MBN C3 S1 1
MBN C4 S1 1
MBN C5 S1 1
MBN C6 S1 1
MBN C1 F1 1
MBN C2 F1 1
MBN C3 F1 1
MBN C4 F1 1
MBN C5 F1 1
MBN C6 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id MBN
_pdbe_chem_comp_rdkit_properties.exactmw 92.063
_pdbe_chem_comp_rdkit_properties.amw 92.141
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 0
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 1
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 0
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 7
_pdbe_chem_comp_rdkit_properties.NumAtoms 15
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 0
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.143
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 55.036
_pdbe_chem_comp_rdkit_properties.tpsa 0
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.940
_pdbe_chem_comp_rdkit_properties.CrippenMR 30.913
_pdbe_chem_comp_rdkit_properties.chi0v 3.500
_pdbe_chem_comp_rdkit_properties.chi1v 1.750
_pdbe_chem_comp_rdkit_properties.chi2v 0.500
_pdbe_chem_comp_rdkit_properties.chi3v 0.500
_pdbe_chem_comp_rdkit_properties.chi4v 0.250
_pdbe_chem_comp_rdkit_properties.chi0n 11.500
_pdbe_chem_comp_rdkit_properties.chi1n 5.750
_pdbe_chem_comp_rdkit_properties.chi2n 0.500
_pdbe_chem_comp_rdkit_properties.chi3n 0.500
_pdbe_chem_comp_rdkit_properties.chi4n 0.250
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.780
_pdbe_chem_comp_rdkit_properties.kappa1 0.838
_pdbe_chem_comp_rdkit_properties.kappa2 1.783
_pdbe_chem_comp_rdkit_properties.kappa3 1.038
_pdbe_chem_comp_rdkit_properties.Phi 0.214
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
MBN UniChem ChEMBL CHEMBL9113
MBN UniChem DrugBank DB11558
MBN UniChem PDBe MBN
MBN UniChem 'Guide to Pharmacology' 5481
MBN UniChem 'KEGG LIGAND' C01455
MBN UniChem ChEBI 17578
MBN UniChem ZINC ZINC000000967534
MBN UniChem eMolecules 483599
MBN UniChem fdasrs 3FPU23BG52
MBN UniChem SureChEMBL SCHEMBL1
MBN UniChem HMDB HMDB0034168
MBN UniChem NMRShiftDB 10008613
MBN UniChem ACTor 50643-04-4
MBN UniChem BindingDb 50008558
MBN UniChem 'EPA CompTox Dashboard' DTXSID7021360
MBN UniChem BRENDA 1335
MBN UniChem BRENDA 222086
MBN UniChem BRENDA 49454
MBN UniChem Rhea 17578
MBN UniChem DailyMed TOLUENE
MBN UniChem ClinicalTrials TOLUENE
MBN UniChem rxnorm TOLUENE
MBN UniChem 'Probes And Drugs' PD013752
MBN UniChem Nikkaji J2.868A
MBN UniChem 'PubChem TPHARMA' 15194222
MBN UniChem PubChem 1140
MBN UniChem Mcule MCULE-4817136027
MBN UniChem ACTor 108-88-3
MBN UniChem ACTor 3101-08-4
MBN UniChem Nikkaji J2.245.009C
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
MBN C 2.228 0.019 -0.080 ETKDGv3 1
MBN C1 0.731 -0.019 0.003 ETKDGv3 2
MBN C2 0.076 -1.193 -0.037 ETKDGv3 3
MBN C3 -1.401 -1.222 0.007 ETKDGv3 4
MBN C4 -2.093 -0.078 0.071 ETKDGv3 5
MBN C5 -1.381 1.216 0.094 ETKDGv3 6
MBN C6 -0.043 1.246 0.058 ETKDGv3 7
MBN H1 2.672 -0.804 0.519 ETKDGv3 8
MBN H2A 2.543 -0.089 -1.139 ETKDGv3 9
MBN H3A 2.618 0.982 0.314 ETKDGv3 10
MBN H2 0.620 -2.127 -0.103 ETKDGv3 11
MBN H3 -1.921 -2.171 -0.014 ETKDGv3 12
MBN H4 -3.175 -0.098 0.102 ETKDGv3 13
MBN H5 -1.945 2.139 0.137 ETKDGv3 14
MBN H6 0.471 2.199 0.070 ETKDGv3 15
#