data_ME2
#
_chem_comp.id ME2
_chem_comp.name 1-ETHOXY-2-(2-METHOXYETHOXY)ETHANE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H16 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2003-06-06
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 148.200
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ME2
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1PJX
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ME2 C7 C7 C 0 1 N N N N N N 3.135 -23.328 6.374 -1.592 -0.509 4.089 C7 ME2 1
ME2 C6 C6 C 0 1 N N N N N N 4.649 -23.543 6.389 -0.503 0.385 3.494 C6 ME2 2
ME2 O3 O3 O 0 1 N N N N N N 5.547 -22.768 7.261 -0.009 -0.202 2.289 O3 ME2 3
ME2 C5 C5 C 0 1 N N N N N N 5.521 -23.231 8.653 0.999 0.675 1.785 C5 ME2 4
ME2 C4 C4 C 0 1 N N N N N N 6.056 -24.711 8.707 1.572 0.101 0.487 C4 ME2 5
ME2 O2 O2 O 0 1 N N N N N N 6.072 -25.356 7.399 0.527 -0.027 -0.478 O2 ME2 6
ME2 C3 C3 C 0 1 N N N N N N 6.774 -26.614 7.351 1.123 -0.565 -1.661 C3 ME2 7
ME2 C2 C2 C 0 1 N N N N N N 7.950 -26.749 8.309 0.052 -0.730 -2.741 C2 ME2 8
ME2 O1 O1 O 0 1 N N N N N N 8.858 -27.814 8.491 -0.526 0.542 -3.036 O1 ME2 9
ME2 C1 C1 C 0 1 N N N N N N 10.259 -27.445 8.678 -1.513 0.323 -4.046 C1 ME2 10
ME2 H71 1H7 H 0 1 N N N N N N 2.454 -23.915 5.713 -1.969 -0.061 5.008 H71 ME2 11
ME2 H72 2H7 H 0 1 N N N N N N 2.768 -23.439 7.420 -2.408 -0.612 3.373 H72 ME2 12
ME2 H73 3H7 H 0 1 N N N N N N 2.949 -22.246 6.173 -1.175 -1.492 4.308 H73 ME2 13
ME2 H61 1H6 H 0 1 N N N N N N 4.834 -24.624 6.589 -0.920 1.368 3.275 H61 ME2 14
ME2 H62 2H6 H 0 1 N N N N N N 5.016 -23.431 5.342 0.312 0.487 4.209 H62 ME2 15
ME2 H51 1H5 H 0 1 N N N N N N 6.079 -22.551 9.338 0.563 1.654 1.587 H51 ME2 16
ME2 H52 2H5 H 0 1 N N N N N N 4.513 -23.125 9.117 1.796 0.774 2.522 H52 ME2 17
ME2 H41 1H4 H 0 1 N N N N N N 7.062 -24.754 9.185 2.341 0.771 0.103 H41 ME2 18
ME2 H42 2H4 H 0 1 N N N N N N 5.478 -25.317 9.443 2.008 -0.877 0.684 H42 ME2 19
ME2 H31 1H3 H 0 1 N N N N N N 6.058 -27.455 7.505 1.898 0.112 -2.018 H31 ME2 20
ME2 H32 2H3 H 0 1 N N N N N N 7.106 -26.825 6.307 1.564 -1.536 -1.436 H32 ME2 21
ME2 H21 1H2 H 0 1 N N N N N N 8.587 -25.856 8.111 0.506 -1.140 -3.643 H21 ME2 22
ME2 H22 2H2 H 0 1 N N N N N N 7.521 -26.558 9.320 -0.722 -1.408 -2.384 H22 ME2 23
ME2 H11 1H1 H 0 1 N N N N N N 10.976 -28.286 8.821 -1.985 1.271 -4.305 H11 ME2 24
ME2 H12 2H1 H 0 1 N N N N N N 10.595 -26.803 7.830 -1.039 -0.100 -4.931 H12 ME2 25
ME2 H13 3H1 H 0 1 N N N N N N 10.348 -26.724 9.524 -2.268 -0.368 -3.672 H13 ME2 26
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ME2 C7 C6 SING N N 1
ME2 C7 H71 SING N N 2
ME2 C7 H72 SING N N 3
ME2 C7 H73 SING N N 4
ME2 C6 O3 SING N N 5
ME2 C6 H61 SING N N 6
ME2 C6 H62 SING N N 7
ME2 O3 C5 SING N N 8
ME2 C5 C4 SING N N 9
ME2 C5 H51 SING N N 10
ME2 C5 H52 SING N N 11
ME2 C4 O2 SING N N 12
ME2 C4 H41 SING N N 13
ME2 C4 H42 SING N N 14
ME2 O2 C3 SING N N 15
ME2 C3 C2 SING N N 16
ME2 C3 H31 SING N N 17
ME2 C3 H32 SING N N 18
ME2 C2 O1 SING N N 19
ME2 C2 H21 SING N N 20
ME2 C2 H22 SING N N 21
ME2 O1 C1 SING N N 22
ME2 C1 H11 SING N N 23
ME2 C1 H12 SING N N 24
ME2 C1 H13 SING N N 25
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ME2 SMILES ACDLabs 10.04 O(CCOCCOCC)C
ME2 SMILES_CANONICAL CACTVS 3.341 CCOCCOCCOC
ME2 SMILES CACTVS 3.341 CCOCCOCCOC
ME2 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CCOCCOCCOC
ME2 SMILES "OpenEye OEToolkits" 1.5.0 CCOCCOCCOC
ME2 InChI InChI 1.03 InChI=1S/C7H16O3/c1-3-9-6-7-10-5-4-8-2/h3-7H2,1-2H3
ME2 InChIKey InChI 1.03 CNJRPYFBORAQAU-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ME2 "SYSTEMATIC NAME" ACDLabs 10.04 1-ethoxy-2-(2-methoxyethoxy)ethane
ME2 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 1-ethoxy-2-(2-methoxyethoxy)ethane
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ME2 'Create component' 2003-06-06 RCSB
ME2 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id ME2
_pdbe_chem_comp_drugbank_details.drugbank_id DB03508
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'Diethylene glycol ethyl methyl ether'
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number 1002-67-1
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_synonyms.comp_id ME2
_pdbe_chem_comp_synonyms.name 1-ethoxy-2-(2-methoxyethoxy)ethane
_pdbe_chem_comp_synonyms.provenance DrugBank
_pdbe_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_classification.comp_id ME2
_pdbe_chem_comp_drugbank_classification.drugbank_id DB03508
_pdbe_chem_comp_drugbank_classification.parent 'Dialkyl ethers'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Organooxygen compounds'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic oxygen compounds'
_pdbe_chem_comp_drugbank_classification.description
"This compound belongs to the class of organic compounds known as dialkyl ethers. These are organic compounds containing the dialkyl ether functional group, with the formula ROR', where R and R' are alkyl groups."
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
ME2 C7 C 3.000 -0.375 1
ME2 C6 C 4.299 0.375 2
ME2 O3 O 5.598 -0.375 3
ME2 C5 C 6.897 0.375 4
ME2 C4 C 8.196 -0.375 5
ME2 O2 O 9.495 0.375 6
ME2 C3 C 10.794 -0.375 7
ME2 C2 C 12.093 0.375 8
ME2 O1 O 13.392 -0.375 9
ME2 C1 C 14.691 0.375 10
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
ME2 C7 C6 SINGLE NONE 1
ME2 C6 O3 SINGLE NONE 2
ME2 O3 C5 SINGLE NONE 3
ME2 C5 C4 SINGLE NONE 4
ME2 C4 O2 SINGLE NONE 5
ME2 O2 C3 SINGLE NONE 6
ME2 C3 C2 SINGLE NONE 7
ME2 C2 O1 SINGLE NONE 8
ME2 O1 C1 SINGLE NONE 9
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id ME2
_pdbe_chem_comp_rdkit_properties.exactmw 148.110
_pdbe_chem_comp_rdkit_properties.amw 148.202
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 10
_pdbe_chem_comp_rdkit_properties.NumAtoms 26
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 1
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 84.749
_pdbe_chem_comp_rdkit_properties.tpsa 27.690
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.686
_pdbe_chem_comp_rdkit_properties.CrippenMR 39.188
_pdbe_chem_comp_rdkit_properties.chi0v 4.725
_pdbe_chem_comp_rdkit_properties.chi1v 1.975
_pdbe_chem_comp_rdkit_properties.chi2v 0.338
_pdbe_chem_comp_rdkit_properties.chi3v 0.338
_pdbe_chem_comp_rdkit_properties.chi4v 0.134
_pdbe_chem_comp_rdkit_properties.chi0n 20.725
_pdbe_chem_comp_rdkit_properties.chi1n 9.975
_pdbe_chem_comp_rdkit_properties.chi2n 0.338
_pdbe_chem_comp_rdkit_properties.chi3n 0.338
_pdbe_chem_comp_rdkit_properties.chi4n 0.134
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.120
_pdbe_chem_comp_rdkit_properties.kappa1 1.259
_pdbe_chem_comp_rdkit_properties.kappa2 8.880
_pdbe_chem_comp_rdkit_properties.kappa3 7.880
_pdbe_chem_comp_rdkit_properties.Phi 1.118
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
ME2 UniChem DrugBank DB03508
ME2 UniChem PDBe ME2
ME2 UniChem ZINC ZINC000002040081
ME2 UniChem eMolecules 36728500
ME2 UniChem fdasrs LF64ICW5Y3
ME2 UniChem SureChEMBL SCHEMBL94287
ME2 UniChem Nikkaji J49.868H
ME2 UniChem 'EPA CompTox Dashboard' DTXSID80883636
ME2 UniChem ChemicalBook CB7855379
ME2 UniChem 'Probes And Drugs' PD006854
ME2 UniChem PubChem 13847
ME2 UniChem ACTor 1002-67-1
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
ME2 C7 -4.417 1.007 0.296 ETKDGv3 1
ME2 C6 -3.446 0.541 -0.782 ETKDGv3 2
ME2 O3 -2.110 0.749 -0.362 ETKDGv3 3
ME2 C5 -1.570 -0.440 0.179 ETKDGv3 4
ME2 C4 -0.184 -0.152 0.752 ETKDGv3 5
ME2 O2 0.669 0.378 -0.247 ETKDGv3 6
ME2 C3 1.424 -0.642 -0.878 ETKDGv3 7
ME2 C2 2.781 -0.805 -0.197 ETKDGv3 8
ME2 O1 3.477 0.423 -0.240 ETKDGv3 9
ME2 C1 4.726 0.274 0.397 ETKDGv3 10
ME2 H71 -5.460 0.911 -0.074 ETKDGv3 11
ME2 H72 -4.305 0.389 1.211 ETKDGv3 12
ME2 H73 -4.222 2.071 0.549 ETKDGv3 13
ME2 H61 -3.618 1.155 -1.691 ETKDGv3 14
ME2 H62 -3.670 -0.515 -1.067 ETKDGv3 15
ME2 H51 -1.479 -1.218 -0.612 ETKDGv3 16
ME2 H52 -2.209 -0.832 1.002 ETKDGv3 17
ME2 H41 -0.289 0.611 1.553 ETKDGv3 18
ME2 H42 0.225 -1.065 1.245 ETKDGv3 19
ME2 H31 1.595 -0.339 -1.933 ETKDGv3 20
ME2 H32 0.895 -1.623 -0.919 ETKDGv3 21
ME2 H21 2.618 -1.134 0.855 ETKDGv3 22
ME2 H22 3.347 -1.595 -0.741 ETKDGv3 23
ME2 H11 5.264 1.243 0.351 ETKDGv3 24
ME2 H12 4.601 0.011 1.471 ETKDGv3 25
ME2 H13 5.355 -0.485 -0.119 ETKDGv3 26
#