data_ME9
#
_chem_comp.id ME9
_chem_comp.name "1,1'-butane-1,4-diylbis(1H-pyrrole-2,5-dione)"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H12 N2 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-03-04
_chem_comp.pdbx_modified_date 2011-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 248.235
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ME9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3QW0
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ME9 OAA OAA O 0 1 N N N N N N 9.936 -2.181 -20.008 -3.430 -2.247 0.216 OAA ME9 1
ME9 OAB OAB O 0 1 N N N N N N 11.512 -6.272 -20.178 -3.433 2.247 0.213 OAB ME9 2
ME9 OAC OAC O 0 1 N N N N N N 6.300 -7.585 -20.496 3.429 2.247 -0.212 OAC ME9 3
ME9 OAD OAD O 0 1 N N N N N N 5.001 -4.520 -23.457 3.432 -2.247 -0.211 OAD ME9 4
ME9 CAE CAE C 0 1 N N N N N N 11.275 -3.313 -18.532 -5.119 -0.673 -0.445 CAE ME9 5
ME9 CAF CAF C 0 1 N N N N N N 11.749 -4.586 -18.566 -5.121 0.670 -0.442 CAF ME9 6
ME9 CAG CAG C 0 1 N N N N N N 4.566 -6.083 -20.489 5.119 0.673 0.444 CAG ME9 7
ME9 CAH CAH C 0 1 N N N N N N 4.204 -5.135 -21.373 5.119 -0.670 0.448 CAH ME9 8
ME9 CAI CAI C 0 1 N N N N N N 8.981 -5.640 -21.799 -0.712 -0.001 -0.279 CAI ME9 9
ME9 CAJ CAJ C 0 1 N N N N N N 8.186 -5.638 -23.130 0.714 0.001 0.276 CAJ ME9 10
ME9 CAK CAK C 0 1 N N N N N N 9.846 -4.348 -21.724 -1.711 0.002 0.880 CAK ME9 11
ME9 CAL CAL C 0 1 N N N N N N 7.040 -6.627 -23.121 1.712 -0.002 -0.884 CAL ME9 12
ME9 CAM CAM C 0 1 N N N N N N 10.550 -3.166 -19.652 -3.799 -1.099 0.070 CAM ME9 13
ME9 CAN CAN C 0 1 N N N N N N 11.307 -5.127 -19.751 -3.800 1.099 0.068 CAN ME9 14
ME9 CAO CAO C 0 1 N N N N N N 5.652 -6.684 -21.013 3.799 1.099 -0.070 CAO ME9 15
ME9 CAP CAP C 0 1 N N N N N N 5.045 -5.219 -22.440 3.800 -1.099 -0.069 CAP ME9 16
ME9 NAQ NAQ N 0 1 N N N N N N 10.573 -4.245 -20.412 -3.076 0.001 0.349 NAQ ME9 17
ME9 NAR NAR N 0 1 N N N N N N 5.929 -6.194 -22.226 3.077 -0.001 -0.353 NAR ME9 18
ME9 HAE HAE H 0 1 N N N N N N 11.446 -2.573 -17.764 -5.927 -1.317 -0.758 HAE ME9 19
ME9 HAF HAF H 0 1 N N N N N N 12.351 -5.075 -17.814 -5.931 1.314 -0.752 HAF ME9 20
ME9 HAG HAG H 0 1 N N N N N N 4.084 -6.315 -19.551 5.926 1.317 0.759 HAG ME9 21
ME9 HAH HAH H 0 1 N N N N N N 3.391 -4.433 -21.257 5.925 -1.314 0.767 HAH ME9 22
ME9 HAI HAI H 0 1 N N N N N N 8.281 -5.666 -20.951 -0.865 0.888 -0.892 HAI ME9 23
ME9 HAIA HAIA H 0 0 N N N N N N 9.634 -6.525 -21.760 -0.864 -0.892 -0.888 HAIA ME9 24
ME9 HAJ HAJ H 0 1 N N N N N N 7.775 -4.630 -23.289 0.866 0.892 0.884 HAJ ME9 25
ME9 HAJA HAJA H 0 0 N N N N N N 8.872 -5.907 -23.947 0.866 -0.888 0.888 HAJA ME9 26
ME9 HAK HAK H 0 1 N N N N N N 10.586 -4.369 -22.538 -1.558 -0.887 1.492 HAK ME9 27
ME9 HAKA HAKA H 0 0 N N N N N N 9.187 -3.474 -21.833 -1.558 0.893 1.489 HAKA ME9 28
ME9 HAL HAL H 0 1 N N N N N N 6.649 -6.720 -24.145 1.560 -0.893 -1.493 HAL ME9 29
ME9 HALA HALA H 0 0 N N N N N N 7.418 -7.597 -22.766 1.560 0.887 -1.496 HALA ME9 30
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ME9 OAA CAM DOUB N N 1
ME9 OAB CAN DOUB N N 2
ME9 CAO OAC DOUB N N 3
ME9 OAD CAP DOUB N N 4
ME9 CAM CAE SING N N 5
ME9 CAF CAE DOUB N N 6
ME9 CAE HAE SING N N 7
ME9 CAN CAF SING N N 8
ME9 CAF HAF SING N N 9
ME9 CAH CAG DOUB N N 10
ME9 CAO CAG SING N N 11
ME9 CAG HAG SING N N 12
ME9 CAP CAH SING N N 13
ME9 CAH HAH SING N N 14
ME9 CAJ CAI SING N N 15
ME9 CAI CAK SING N N 16
ME9 CAI HAI SING N N 17
ME9 CAI HAIA SING N N 18
ME9 CAJ CAL SING N N 19
ME9 CAJ HAJ SING N N 20
ME9 CAJ HAJA SING N N 21
ME9 CAK NAQ SING N N 22
ME9 CAK HAK SING N N 23
ME9 CAK HAKA SING N N 24
ME9 CAL NAR SING N N 25
ME9 CAL HAL SING N N 26
ME9 CAL HALA SING N N 27
ME9 NAQ CAM SING N N 28
ME9 NAQ CAN SING N N 29
ME9 NAR CAO SING N N 30
ME9 CAP NAR SING N N 31
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ME9 SMILES ACDLabs 12.01 O=C1C=CC(=O)N1CCCCN2C(=O)C=CC2=O
ME9 SMILES_CANONICAL CACTVS 3.370 O=C1C=CC(=O)N1CCCCN2C(=O)C=CC2=O
ME9 SMILES CACTVS 3.370 O=C1C=CC(=O)N1CCCCN2C(=O)C=CC2=O
ME9 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 C1=CC(=O)N(C1=O)CCCCN2C(=O)C=CC2=O
ME9 SMILES "OpenEye OEToolkits" 1.7.0 C1=CC(=O)N(C1=O)CCCCN2C(=O)C=CC2=O
ME9 InChI InChI 1.03 InChI=1S/C12H12N2O4/c15-9-3-4-10(16)13(9)7-1-2-8-14-11(17)5-6-12(14)18/h3-6H,1-2,7-8H2
ME9 InChIKey InChI 1.03 WXXSHAKLDCERGU-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ME9 "SYSTEMATIC NAME" ACDLabs 12.01 "1,1'-butane-1,4-diylbis(1H-pyrrole-2,5-dione)"
ME9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 1-[4-(2,5-dioxopyrrol-1-yl)butyl]pyrrole-2,5-dione
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ME9 'Create component' 2011-03-04 RCSB
ME9 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
ME9 OAA O 10.878 3.418 1
ME9 OAB O 5.598 3.418 2
ME9 OAC O 3.000 -3.418 3
ME9 OAD O 8.280 -3.418 4
ME9 CAE C 8.988 5.308 5
ME9 CAF C 7.488 5.308 6
ME9 CAG C 4.890 -5.308 7
ME9 CAH C 6.390 -5.308 8
ME9 CAI C 6.939 0.750 9
ME9 CAJ C 6.939 -0.750 10
ME9 CAK C 8.238 1.500 11
ME9 CAL C 5.640 -1.500 12
ME9 CAM C 9.452 3.882 13
ME9 CAN C 7.025 3.882 14
ME9 CAO C 4.427 -3.882 15
ME9 CAP C 6.854 -3.882 16
ME9 NAQ N 8.238 3.000 17
ME9 NAR N 5.640 -3.000 18
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
ME9 OAA CAM DOUBLE NONE 1
ME9 OAB CAN DOUBLE NONE 2
ME9 CAO OAC DOUBLE NONE 3
ME9 OAD CAP DOUBLE NONE 4
ME9 CAM CAE SINGLE NONE 5
ME9 CAF CAE DOUBLE NONE 6
ME9 CAN CAF SINGLE NONE 7
ME9 CAH CAG DOUBLE NONE 8
ME9 CAO CAG SINGLE NONE 9
ME9 CAP CAH SINGLE NONE 10
ME9 CAJ CAI SINGLE NONE 11
ME9 CAI CAK SINGLE NONE 12
ME9 CAJ CAL SINGLE NONE 13
ME9 CAK NAQ SINGLE NONE 14
ME9 CAL NAR SINGLE NONE 15
ME9 NAQ CAM SINGLE NONE 16
ME9 NAQ CAN SINGLE NONE 17
ME9 NAR CAO SINGLE NONE 18
ME9 CAP NAR SINGLE NONE 19
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
ME9 MurckoScaffold S1 scaffold O=C1C=CC(=O)N1CCCCN1C(=O)C=CC1=O InChI=1S/C12H12N2O4/c15-9-3-4-10(16)13(9)7-1-2-8-14-11(17)5-6-12(14)18/h3-6H,1-2,7-8H2 WXXSHAKLDCERGU-UHFFFAOYSA-N
ME9 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
ME9 3-pyrroline F2 fragment C1=CCNC1 InChI=1S/C4H7N/c1-2-4-5-3-1/h1-2,5H,3-4H2 JVQIKJMSUIMUDI-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
ME9 OAA S1 1
ME9 OAB S1 1
ME9 OAC S1 1
ME9 OAD S1 1
ME9 CAE S1 1
ME9 CAF S1 1
ME9 CAG S1 1
ME9 CAH S1 1
ME9 CAI S1 1
ME9 CAJ S1 1
ME9 CAK S1 1
ME9 CAL S1 1
ME9 CAM S1 1
ME9 CAN S1 1
ME9 CAO S1 1
ME9 CAP S1 1
ME9 NAQ S1 1
ME9 NAR S1 1
ME9 NAQ F1 1
ME9 CAM F1 1
ME9 OAA F1 1
ME9 CAE F1 1
ME9 NAQ F1 2
ME9 CAN F1 2
ME9 OAB F1 2
ME9 CAF F1 2
ME9 NAR F1 3
ME9 CAO F1 3
ME9 OAC F1 3
ME9 CAG F1 3
ME9 NAR F1 4
ME9 CAP F1 4
ME9 OAD F1 4
ME9 CAH F1 4
ME9 CAM F2 1
ME9 NAQ F2 1
ME9 CAN F2 1
ME9 CAF F2 1
ME9 CAE F2 1
ME9 CAO F2 2
ME9 NAR F2 2
ME9 CAP F2 2
ME9 CAH F2 2
ME9 CAG F2 2
#
_pdbe_chem_comp_rdkit_properties.comp_id ME9
_pdbe_chem_comp_rdkit_properties.exactmw 248.080
_pdbe_chem_comp_rdkit_properties.amw 248.238
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 6
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 4
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 18
_pdbe_chem_comp_rdkit_properties.NumAtoms 30
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 4
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.333
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 120.388
_pdbe_chem_comp_rdkit_properties.tpsa 74.760
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.383
_pdbe_chem_comp_rdkit_properties.CrippenMR 60.954
_pdbe_chem_comp_rdkit_properties.chi0v 8.527
_pdbe_chem_comp_rdkit_properties.chi1v 4.408
_pdbe_chem_comp_rdkit_properties.chi2v 1.763
_pdbe_chem_comp_rdkit_properties.chi3v 1.763
_pdbe_chem_comp_rdkit_properties.chi4v 0.993
_pdbe_chem_comp_rdkit_properties.chi0n 20.527
_pdbe_chem_comp_rdkit_properties.chi1n 10.408
_pdbe_chem_comp_rdkit_properties.chi2n 1.763
_pdbe_chem_comp_rdkit_properties.chi3n 1.763
_pdbe_chem_comp_rdkit_properties.chi4n 0.993
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.240
_pdbe_chem_comp_rdkit_properties.kappa1 4.151
_pdbe_chem_comp_rdkit_properties.kappa2 4.950
_pdbe_chem_comp_rdkit_properties.kappa3 2.368
_pdbe_chem_comp_rdkit_properties.Phi 1.142
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
ME9 UniChem ChEMBL CHEMBL567436
ME9 UniChem PDBe ME9
ME9 UniChem ZINC ZINC000001677060
ME9 UniChem ACTor 28537-70-4
ME9 UniChem BindingDb 50300350
ME9 UniChem ChemicalBook CB4131366
ME9 UniChem 'Probes And Drugs' PD135130
ME9 UniChem 'EPA CompTox Dashboard' DTXSID80286325
ME9 UniChem eMolecules 531023
ME9 UniChem SureChEMBL SCHEMBL155748
ME9 UniChem 'PubChem TPHARMA' 14941673
ME9 UniChem PubChem 239576
ME9 UniChem Nikkaji J102.954A
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
ME9 OAA -3.649 0.968 -2.048 ETKDGv3 1
ME9 OAB -3.101 -1.293 1.946 ETKDGv3 2
ME9 OAC 3.029 -1.689 -2.008 ETKDGv3 3
ME9 OAD 3.696 1.026 1.674 ETKDGv3 4
ME9 CAE -5.047 0.714 -0.096 ETKDGv3 5
ME9 CAF -4.889 0.063 1.054 ETKDGv3 6
ME9 CAG 4.883 -0.319 -1.287 ETKDGv3 7
ME9 CAH 5.075 0.462 -0.228 ETKDGv3 8
ME9 CAI -0.729 0.588 0.035 ETKDGv3 9
ME9 CAJ 0.756 0.528 -0.355 ETKDGv3 10
ME9 CAK -1.539 -0.581 -0.539 ETKDGv3 11
ME9 CAL 1.510 -0.598 0.364 ETKDGv3 12
ME9 CAM -3.863 0.464 -0.915 ETKDGv3 13
ME9 CAN -3.600 -0.622 1.004 ETKDGv3 14
ME9 CAO 3.563 -0.930 -1.157 ETKDGv3 15
ME9 CAP 3.883 0.374 0.612 ETKDGv3 16
ME9 NAQ -2.959 -0.407 -0.247 ETKDGv3 17
ME9 NAR 2.937 -0.530 0.056 ETKDGv3 18
ME9 HAE -5.897 1.329 -0.358 ETKDGv3 19
ME9 HAF -5.591 0.063 1.878 ETKDGv3 20
ME9 HAG 5.581 -0.455 -2.103 ETKDGv3 21
ME9 HAH 5.955 1.064 -0.042 ETKDGv3 22
ME9 HAI -1.151 1.539 -0.357 ETKDGv3 23
ME9 HAIA -0.829 0.609 1.143 ETKDGv3 24
ME9 HAJ 0.853 0.405 -1.456 ETKDGv3 25
ME9 HAJA 1.224 1.499 -0.083 ETKDGv3 26
ME9 HAK -1.396 -0.638 -1.640 ETKDGv3 27
ME9 HAKA -1.196 -1.540 -0.098 ETKDGv3 28
ME9 HAL 1.121 -1.587 0.044 ETKDGv3 29
ME9 HALA 1.369 -0.509 1.462 ETKDGv3 30
#