data_MEM
#
_chem_comp.id MEM
_chem_comp.name
"(4R,5S,6S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-6-[(1R)-1-hydroxyethyl]-4-methyl-7-oxo-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C17 H25 N3 O5 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "Meropenem (closed form)"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-04-30
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 383.463
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code MEM
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4EUZ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MEM C24 C24 C 0 1 N N N N N N -20.665 -12.245 28.993 7.494 -0.252 0.302 C24 MEM 1
MEM N23 N23 N 0 1 N N N N N N -21.034 -10.819 29.247 6.274 0.549 0.168 N23 MEM 2
MEM C25 C25 C 0 1 N N N N N N -22.469 -10.489 29.422 6.208 1.889 0.756 C25 MEM 3
MEM C22 C22 C 0 1 N N N N N N -20.044 -9.940 29.239 5.212 0.052 -0.497 C22 MEM 4
MEM O26 O26 O 0 1 N N N N N N -18.886 -10.355 29.057 5.266 -1.057 -0.985 O26 MEM 5
MEM C20 C20 C 0 1 N N S N N N -20.348 -8.464 29.469 3.957 0.876 -0.636 C20 MEM 6
MEM C21 C21 C 0 1 N N N N N N -21.092 -7.717 28.402 3.118 0.774 0.656 C21 MEM 7
MEM N19 N19 N 0 1 N N N N N N -19.089 -7.750 29.640 3.130 0.348 -1.736 N19 MEM 8
MEM C18 C18 C 0 1 N N N N N N -18.776 -7.133 28.383 1.833 -0.094 -1.181 C18 MEM 9
MEM C17 C17 C 0 1 N N S N N N -20.150 -6.640 27.873 1.662 0.725 0.123 C17 MEM 10
MEM S16 S16 S 0 1 N N N N N N -20.204 -6.737 26.039 0.574 -0.132 1.289 S16 MEM 11
MEM C2 C2 C 0 1 N N N N N N -19.162 -5.426 25.561 -0.952 -0.030 0.415 C2 MEM 12
MEM C1 C1 C 0 1 N N R N N N -19.174 -4.051 26.181 -1.688 1.245 0.076 C1 MEM 13
MEM C10 C10 C 0 1 N N N N N N -20.597 -3.447 26.145 -2.123 1.966 1.354 C10 MEM 14
MEM C5 C5 C 0 1 N N S N N N -18.033 -3.342 25.440 -2.914 0.784 -0.726 C5 MEM 15
MEM C6 C6 C 0 1 N N S N N N -18.342 -2.272 24.391 -4.204 0.677 0.098 C6 MEM 16
MEM C8 C8 C 0 1 N N R N N N -17.661 -0.909 24.468 -5.443 1.210 -0.626 C8 MEM 17
MEM C9 C9 C 0 1 N N N N N N -18.119 -0.144 25.704 -6.667 1.057 0.279 C9 MEM 18
MEM O13 O13 O 0 1 N N N N N N -16.232 -1.093 24.576 -5.253 2.591 -0.941 O13 MEM 19
MEM C7 C7 C 0 1 N N N N N N -17.921 -3.290 23.389 -4.038 -0.825 -0.005 C7 MEM 20
MEM O12 O12 O 0 1 N N N N N N -17.925 -3.361 22.157 -4.694 -1.773 0.372 O12 MEM 21
MEM N4 N4 N 0 1 N N N N N N -17.705 -4.235 24.345 -2.845 -0.691 -0.698 N4 MEM 22
MEM C3 C3 C 0 1 N N N N N N -18.248 -5.486 24.538 -1.651 -1.076 -0.066 C3 MEM 23
MEM C11 C11 C 0 1 N N N N N N -17.955 -6.684 23.689 -1.243 -2.423 0.080 C11 MEM 24
MEM O15 O15 O 0 1 N N N N N N -16.727 -6.775 23.340 -1.869 -3.312 -0.469 O15 MEM 25
MEM O14 O14 O 0 1 N N N N N N -18.825 -7.500 23.374 -0.160 -2.723 0.827 O14 MEM 26
MEM H1 H1 H 0 1 N N N N N N -21.570 -12.870 29.026 7.436 -0.852 1.210 H1 MEM 27
MEM H2 H2 H 0 1 N N N N N N -20.196 -12.331 28.002 7.594 -0.908 -0.562 H2 MEM 28
MEM H3 H3 H 0 1 N N N N N N -19.958 -12.584 29.764 8.358 0.410 0.358 H3 MEM 29
MEM H4 H4 H 0 1 N N N N N N -22.578 -9.409 29.600 6.552 2.623 0.028 H4 MEM 30
MEM H5 H5 H 0 1 N N N N N N -23.023 -10.769 28.514 5.180 2.111 1.039 H5 MEM 31
MEM H6 H6 H 0 1 N N N N N N -22.871 -11.045 30.282 6.845 1.929 1.640 H6 MEM 32
MEM H7 H7 H 0 1 N N N N N N -20.924 -8.384 30.403 4.216 1.916 -0.832 H7 MEM 33
MEM H8 H8 H 0 1 N N N N N N -21.996 -7.254 28.825 3.360 -0.137 1.202 H8 MEM 34
MEM H9 H9 H 0 1 N N N N N N -21.377 -8.402 27.590 3.272 1.651 1.285 H9 MEM 35
MEM H10 H10 H 0 1 N N N N N N -18.365 -8.390 29.897 3.598 -0.410 -2.209 H10 MEM 36
MEM H12 H12 H 0 1 N N N N N N -18.336 -7.861 27.686 1.026 0.130 -1.878 H12 MEM 37
MEM H13 H13 H 0 1 N N N N N N -18.082 -6.291 28.520 1.859 -1.161 -0.960 H13 MEM 38
MEM H14 H14 H 0 1 N N N N N N -20.404 -5.621 28.200 1.290 1.727 -0.090 H14 MEM 39
MEM H15 H15 H 0 1 N N N N N N -18.880 -4.149 27.236 -1.060 1.897 -0.531 H15 MEM 40
MEM H16 H16 H 0 1 N N N N N N -21.281 -4.084 26.726 -1.243 2.339 1.878 H16 MEM 41
MEM H17 H17 H 0 1 N N N N N N -20.578 -2.437 26.581 -2.774 2.801 1.097 H17 MEM 42
MEM H18 H18 H 0 1 N N N N N N -20.945 -3.390 25.103 -2.661 1.270 1.998 H18 MEM 43
MEM H19 H19 H 0 1 N N N N N N -17.186 -3.082 26.092 -3.018 1.245 -1.708 H19 MEM 44
MEM H20 H20 H 0 1 N N N N N N -19.431 -2.128 24.335 -4.109 1.062 1.114 H20 MEM 45
MEM H21 H21 H 0 1 N N N N N N -17.907 -0.327 23.567 -5.597 0.645 -1.545 H21 MEM 46
MEM H22 H22 H 0 1 N N N N N N -17.616 0.834 25.738 -6.513 1.622 1.198 H22 MEM 47
MEM H23 H23 H 0 1 N N N N N N -19.208 0.006 25.660 -7.549 1.436 -0.237 H23 MEM 48
MEM H24 H24 H 0 1 N N N N N N -17.864 -0.719 26.606 -6.812 0.004 0.519 H24 MEM 49
MEM H25 H25 H 0 1 N N N N N N -15.806 -0.245 24.624 -5.109 3.154 -0.169 H25 MEM 50
MEM H26 H26 H 0 1 N N N N N N -18.438 -8.187 22.844 0.086 -3.658 0.806 H26 MEM 51
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MEM O12 C7 DOUB N N 1
MEM O15 C11 DOUB N N 2
MEM O14 C11 SING N N 3
MEM C7 N4 SING N N 4
MEM C7 C6 SING N N 5
MEM C11 C3 SING N N 6
MEM N4 C3 SING N N 7
MEM N4 C5 SING N N 8
MEM C6 C8 SING N N 9
MEM C6 C5 SING N N 10
MEM C8 O13 SING N N 11
MEM C8 C9 SING N N 12
MEM C3 C2 DOUB N N 13
MEM C5 C1 SING N N 14
MEM C2 S16 SING N N 15
MEM C2 C1 SING N N 16
MEM S16 C17 SING N N 17
MEM C10 C1 SING N N 18
MEM C17 C18 SING N N 19
MEM C17 C21 SING N N 20
MEM C18 N19 SING N N 21
MEM C21 C20 SING N N 22
MEM C24 N23 SING N N 23
MEM O26 C22 DOUB N N 24
MEM C22 N23 SING N N 25
MEM C22 C20 SING N N 26
MEM N23 C25 SING N N 27
MEM C20 N19 SING N N 28
MEM C24 H1 SING N N 29
MEM C24 H2 SING N N 30
MEM C24 H3 SING N N 31
MEM C25 H4 SING N N 32
MEM C25 H5 SING N N 33
MEM C25 H6 SING N N 34
MEM C20 H7 SING N N 35
MEM C21 H8 SING N N 36
MEM C21 H9 SING N N 37
MEM N19 H10 SING N N 38
MEM C18 H12 SING N N 39
MEM C18 H13 SING N N 40
MEM C17 H14 SING N N 41
MEM C1 H15 SING N N 42
MEM C10 H16 SING N N 43
MEM C10 H17 SING N N 44
MEM C10 H18 SING N N 45
MEM C5 H19 SING N N 46
MEM C6 H20 SING N N 47
MEM C8 H21 SING N N 48
MEM C9 H22 SING N N 49
MEM C9 H23 SING N N 50
MEM C9 H24 SING N N 51
MEM O13 H25 SING N N 52
MEM O14 H26 SING N N 53
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MEM SMILES ACDLabs 12.01 O=C(N(C)C)C3NCC(SC2=C(C(=O)O)N1C(=O)C(C(O)C)C1C2C)C3
MEM InChI InChI 1.03 InChI=1S/C17H25N3O5S/c1-7-12-11(8(2)21)16(23)20(12)13(17(24)25)14(7)26-9-5-10(18-6-9)15(22)19(3)4/h7-12,18,21H,5-6H2,1-4H3,(H,24,25)/t7-,8-,9+,10+,11-,12-/m1/s1
MEM InChIKey InChI 1.03 DMJNNHOOLUXYBV-PQTSNVLCSA-N
MEM SMILES_CANONICAL CACTVS 3.370 C[C@@H](O)[C@@H]1[C@H]2[C@@H](C)C(=C(N2C1=O)C(O)=O)S[C@@H]3CN[C@@H](C3)C(=O)N(C)C
MEM SMILES CACTVS 3.370 C[CH](O)[CH]1[CH]2[CH](C)C(=C(N2C1=O)C(O)=O)S[CH]3CN[CH](C3)C(=O)N(C)C
MEM SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 C[C@@H]1[C@@H]2[C@H](C(=O)N2C(=C1S[C@H]3C[C@H](NC3)C(=O)N(C)C)C(=O)O)[C@@H](C)O
MEM SMILES "OpenEye OEToolkits" 1.7.6 CC1C2C(C(=O)N2C(=C1SC3CC(NC3)C(=O)N(C)C)C(=O)O)C(C)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MEM "SYSTEMATIC NAME" ACDLabs 12.01 "(4R,5S,6S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl}-6-[(1R)-1-hydroxyethyl]-4-methyl-7-oxo-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid"
MEM "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "(4R,5S,6S)-3-[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]sulfanyl-4-methyl-6-[(1R)-1-oxidanylethyl]-7-oxidanylidene-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MEM 'Create component' 2012-04-30 RCSB
MEM 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id MEM
_pdbx_chem_comp_synonyms.name "Meropenem (closed form)"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_drugbank_details.comp_id MEM
_pdbe_chem_comp_drugbank_details.drugbank_id DB00760
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name Meropenem
_pdbe_chem_comp_drugbank_details.description
'Meropenem is a broad-spectrum carbapenem antibiotic. It is active against Gram-positive and Gram-negative bacteria. Meropenem exerts its action by penetrating bacterial cells readily and interfering with the synthesis of vital cell wall components, which leads to cell death.  In August 2017, a combination antibacterial therapy under the market name vabomere was approved for treatment of adult patients with complicated urinary tract infections (cUTI). Vabomere consists of meropenem and [DB12107] and is intravenously admininstered. The treatment aims to resolve infection-related symptoms and achieve negative urine culture, where the infections are proven or strongly suspected to be caused by susceptible bacteria.'
_pdbe_chem_comp_drugbank_details.cas_number 96036-03-2
_pdbe_chem_comp_drugbank_details.mechanism_of_action
'The bactericidal activity of meropenem results from the inhibition of cell wall synthesis. Meropenem readily penetrates the cell wall of most Gram-positive and Gram-negative bacteria to reach penicillin-binding- protein (PBP) targets. Its strongest affinities are toward PBPs 2, 3 and 4 of <i>Escherichia coli</i> and <i>Pseudomonas aeruginosa</i>; and PBPs 1, 2 and 4 of <i>Staphylococcus aureus</i>.'
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
MEM ICI-194660 ChEMBL 'Research Code'
MEM Meropenem ChEMBL Tradename
MEM Merrem ChEMBL Tradename
MEM 'Merrem iv' ChEMBL Tradename
MEM 'Meropenem (closed form)' wwPDB ?
MEM '(4R,5S,6S)-3-{[(3S,5S)-5-(dimethylcarbamoyl)pyrrolidin-3-yl]thio}-6-[(1R)-1-hydroxyethyl]-4-methyl-7-oxo-1-azabicyclo[3.2.0]hept-2-ene-2-carboxylic acid' DrugBank ?
MEM Meropenem DrugBank ?
MEM 'Meropenem anhydrous' DrugBank ?
MEM Meropenemum DrugBank ?
MEM Aronem DrugBank 'International brand'
MEM Aropen DrugBank 'International brand'
MEM Carbanem DrugBank 'International brand'
MEM Erope DrugBank 'International brand'
MEM Fulspec DrugBank 'International brand'
MEM I-penam DrugBank 'International brand'
MEM Merenz DrugBank 'International brand'
MEM Merofit DrugBank 'International brand'
MEM Meronem DrugBank 'International brand'
MEM Meronis DrugBank 'International brand'
MEM Meropen DrugBank 'International brand'
MEM Merotec DrugBank 'International brand'
MEM 'Merrem I.V.' DrugBank 'International brand'
MEM Monan DrugBank 'International brand'
MEM Ropenem DrugBank 'International brand'
MEM Zeropenem DrugBank 'International brand'
#
_pdbe_chem_comp_drugbank_classification.comp_id MEM
_pdbe_chem_comp_drugbank_classification.drugbank_id DB00760
_pdbe_chem_comp_drugbank_classification.parent Thienamycins
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Lactams
_pdbe_chem_comp_drugbank_classification.superclass 'Organoheterocyclic compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as thienamycins. These are beta-lactam antibiotics that differ from penicillins in having the thiazolidine sulfur atom replaced by carbon, the sulfur then becoming the first atom in the side chain.'
#
_pdbe_chem_comp_drugbank_targets.comp_id MEM
_pdbe_chem_comp_drugbank_targets.drugbank_id DB00760
_pdbe_chem_comp_drugbank_targets.name 'D-alanyl-D-alanine carboxypeptidase DacB'
_pdbe_chem_comp_drugbank_targets.organism 'Escherichia coli (strain K12)'
_pdbe_chem_comp_drugbank_targets.uniprot_id P24228
_pdbe_chem_comp_drugbank_targets.pharmacologically_active yes
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
MEM C24 C 13.640 5.647 1
MEM N23 N 13.796 4.155 2
MEM C25 C 15.167 3.545 3
MEM C22 C 12.583 3.273 4
MEM O26 O 11.213 3.883 5
MEM C20 C 12.740 1.781 6
MEM C21 C 11.625 0.778 7
MEM N19 N 14.039 1.031 8
MEM C18 C 13.727 -0.436 9
MEM C17 C 12.235 -0.593 10
MEM S16 S 11.485 -1.892 11
MEM C2 C 9.985 -1.892 12
MEM C1 C 9.104 -0.678 13
MEM C10 C 9.567 0.748 14
MEM C5 C 7.677 -1.142 15
MEM C6 C 6.164 -1.135 16
MEM C8 C 5.106 -0.073 17
MEM C9 C 5.497 1.375 18
MEM O13 O 3.656 -0.458 19
MEM C7 C 6.164 -2.648 20
MEM O12 O 5.106 -3.711 21
MEM N4 N 7.677 -2.642 22
MEM C3 C 9.104 -3.105 23
MEM C11 C 9.567 -4.532 24
MEM O15 O 11.034 -4.844 25
MEM O14 O 8.563 -5.647 26
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
MEM O12 C7 DOUBLE NONE 1
MEM O15 C11 DOUBLE NONE 2
MEM O14 C11 SINGLE NONE 3
MEM C7 N4 SINGLE NONE 4
MEM C6 C7 SINGLE BEGINDASH 5
MEM C11 C3 SINGLE NONE 6
MEM N4 C3 SINGLE NONE 7
MEM N4 C5 SINGLE NONE 8
MEM C6 C8 SINGLE NONE 9
MEM C6 C5 SINGLE NONE 10
MEM C8 O13 SINGLE NONE 11
MEM C8 C9 SINGLE BEGINDASH 12
MEM C3 C2 DOUBLE NONE 13
MEM C5 C1 SINGLE NONE 14
MEM C2 S16 SINGLE NONE 15
MEM C2 C1 SINGLE NONE 16
MEM C17 S16 SINGLE BEGINWEDGE 17
MEM C1 C10 SINGLE BEGINWEDGE 18
MEM C17 C18 SINGLE NONE 19
MEM C17 C21 SINGLE NONE 20
MEM C18 N19 SINGLE NONE 21
MEM C21 C20 SINGLE NONE 22
MEM C24 N23 SINGLE NONE 23
MEM O26 C22 DOUBLE NONE 24
MEM C22 N23 SINGLE NONE 25
MEM C20 C22 SINGLE BEGINWEDGE 26
MEM N23 C25 SINGLE NONE 27
MEM C20 N19 SINGLE NONE 28
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
MEM MurckoScaffold S1 scaffold 'O=C1C[C@H]2CC(S[C@H]3CCNC3)=CN12' InChI=1S/C10H14N2OS/c13-10-4-7-3-9(6-12(7)10)14-8-1-2-11-5-8/h6-8,11H,1-5H2/t7-,8+/m1/s1 OQBCMTMHFNBXLC-SFYZADRCSA-N
MEM amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
MEM peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
MEM 2-pyrroline F3 fragment C1=CNCC1 InChI=1S/C4H7N/c1-2-4-5-3-1/h1,3,5H,2,4H2 RSEBUVRVKCANEP-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
MEM C20 S1 1
MEM C21 S1 1
MEM N19 S1 1
MEM C18 S1 1
MEM C17 S1 1
MEM S16 S1 1
MEM C2 S1 1
MEM C1 S1 1
MEM C5 S1 1
MEM C6 S1 1
MEM C7 S1 1
MEM O12 S1 1
MEM N4 S1 1
MEM C3 S1 1
MEM N23 F1 1
MEM C22 F1 1
MEM O26 F1 1
MEM C20 F1 1
MEM N4 F1 2
MEM C7 F1 2
MEM O12 F1 2
MEM C6 F1 2
MEM O26 F2 1
MEM C22 F2 1
MEM C20 F2 1
MEM N19 F2 1
MEM O15 F2 2
MEM C11 F2 2
MEM C3 F2 2
MEM N4 F2 2
MEM C5 F3 1
MEM C1 F3 1
MEM C2 F3 1
MEM C3 F3 1
MEM N4 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id MEM
_pdbe_chem_comp_rdkit_properties.exactmw 383.151
_pdbe_chem_comp_rdkit_properties.amw 383.470
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 10
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 26
_pdbe_chem_comp_rdkit_properties.NumAtoms 51
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.706
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 6
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 191.493
_pdbe_chem_comp_rdkit_properties.tpsa 110.180
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.308
_pdbe_chem_comp_rdkit_properties.CrippenMR 96.111
_pdbe_chem_comp_rdkit_properties.chi0v 13.108
_pdbe_chem_comp_rdkit_properties.chi1v 7.284
_pdbe_chem_comp_rdkit_properties.chi2v 4.310
_pdbe_chem_comp_rdkit_properties.chi3v 4.310
_pdbe_chem_comp_rdkit_properties.chi4v 3.180
_pdbe_chem_comp_rdkit_properties.chi0n 37.291
_pdbe_chem_comp_rdkit_properties.chi1n 18.731
_pdbe_chem_comp_rdkit_properties.chi2n 3.311
_pdbe_chem_comp_rdkit_properties.chi3n 3.311
_pdbe_chem_comp_rdkit_properties.chi4n 2.267
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.580
_pdbe_chem_comp_rdkit_properties.kappa1 5.066
_pdbe_chem_comp_rdkit_properties.kappa2 6.862
_pdbe_chem_comp_rdkit_properties.kappa3 2.913
_pdbe_chem_comp_rdkit_properties.Phi 1.337
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
MEM UniChem ChEMBL CHEMBL127
MEM UniChem DrugBank DB00760
MEM UniChem PDBe MEM
MEM UniChem 'Guide to Pharmacology' 10829
MEM UniChem 'PubChem DOTF' 12014124
MEM UniChem ChEBI 43968
MEM UniChem NIH SAM001246650
MEM UniChem ZINC ZINC000003808779
MEM UniChem eMolecules 29780974
MEM UniChem fdasrs YOP6PX0BAO
MEM UniChem HMDB HMDB0014898
MEM UniChem 'PubChem TPHARMA' 14780292
MEM UniChem PubChem 441130
MEM UniChem LINCS LSM-5208
MEM UniChem ACTor 96036-03-2
MEM UniChem BindingDb 50129062
MEM UniChem DrugCentral 1709
MEM UniChem BRENDA 917
MEM UniChem ChemicalBook CB0190233
MEM UniChem ChemicalBook CB7459533
MEM UniChem DailyMed MEROPENEM
MEM UniChem ClinicalTrials 'ICI 194,660'
MEM UniChem ClinicalTrials ICI-194660
MEM UniChem ClinicalTrials MERONEM
MEM UniChem ClinicalTrials MEROPENEM
MEM UniChem ClinicalTrials 'MEROPENEM TRIHYDRATE'
MEM UniChem ClinicalTrials MERREM
MEM UniChem ClinicalTrials 'MERREM I.V.'
MEM UniChem ClinicalTrials SM-7338
MEM UniChem rxnorm MEROPENEM
MEM UniChem rxnorm 'MEROPENEM ANHYDROUS'
MEM UniChem rxnorm MERREM
MEM UniChem MedChemExpress HY-13678
MEM UniChem 'Probes And Drugs' PD003103
MEM UniChem 'EPA CompTox Dashboard' DTXSID7045526
MEM UniChem eMolecules 31526867
MEM UniChem SureChEMBL SCHEMBL34442
MEM UniChem 'PubChem TPHARMA' 14902620
MEM UniChem PubChem 40466974
MEM UniChem Nikkaji J327.339C
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
MEM C24 6.538 -0.562 -0.882 ETKDGv3 1
MEM N23 5.961 0.447 0.014 ETKDGv3 2
MEM C25 6.756 1.616 0.402 ETKDGv3 3
MEM C22 4.601 0.337 0.494 ETKDGv3 4
MEM O26 4.079 1.320 1.090 ETKDGv3 5
MEM C20 3.748 -0.893 0.222 ETKDGv3 6
MEM C21 2.819 -0.671 -0.979 ETKDGv3 7
MEM N19 2.919 -1.275 1.379 ETKDGv3 8
MEM C18 1.608 -1.622 0.838 ETKDGv3 9
MEM C17 1.412 -0.805 -0.428 ETKDGv3 10
MEM S16 0.725 0.857 -0.056 ETKDGv3 11
MEM C2 -0.978 0.305 0.134 ETKDGv3 12
MEM C1 -1.922 0.073 -1.046 ETKDGv3 13
MEM C10 -2.099 1.351 -1.873 ETKDGv3 14
MEM C5 -3.225 -0.479 -0.378 ETKDGv3 15
MEM C6 -4.465 0.283 -0.304 ETKDGv3 16
MEM C8 -5.726 -0.536 -0.663 ETKDGv3 17
MEM C9 -7.007 0.270 -0.417 ETKDGv3 18
MEM O13 -5.674 -0.954 -2.005 ETKDGv3 19
MEM C7 -4.235 0.391 1.175 ETKDGv3 20
MEM O12 -4.852 0.908 2.143 ETKDGv3 21
MEM N4 -2.923 -0.272 1.006 ETKDGv3 22
MEM C3 -1.605 0.108 1.295 ETKDGv3 23
MEM C11 -1.117 0.369 2.660 ETKDGv3 24
MEM O15 0.034 0.841 2.861 ETKDGv3 25
MEM O14 -1.946 0.097 3.743 ETKDGv3 26
MEM H1 7.525 -0.243 -1.278 ETKDGv3 27
MEM H2 5.865 -0.724 -1.751 ETKDGv3 28
MEM H3 6.682 -1.515 -0.333 ETKDGv3 29
MEM H4 6.279 2.540 0.013 ETKDGv3 30
MEM H5 6.819 1.675 1.510 ETKDGv3 31
MEM H6 7.791 1.564 0.004 ETKDGv3 32
MEM H7 4.403 -1.761 0.005 ETKDGv3 33
MEM H8 2.996 -1.470 -1.733 ETKDGv3 34
MEM H9 2.980 0.308 -1.484 ETKDGv3 35
MEM H10 2.780 -0.470 2.034 ETKDGv3 36
MEM H12 1.603 -2.704 0.583 ETKDGv3 37
MEM H13 0.806 -1.451 1.585 ETKDGv3 38
MEM H14 0.761 -1.339 -1.154 ETKDGv3 39
MEM H15 -1.496 -0.716 -1.702 ETKDGv3 40
MEM H16 -2.381 2.209 -1.227 ETKDGv3 41
MEM H17 -1.145 1.600 -2.385 ETKDGv3 42
MEM H18 -2.876 1.195 -2.652 ETKDGv3 43
MEM H19 -3.359 -1.568 -0.576 ETKDGv3 44
MEM H20 -4.450 1.283 -0.783 ETKDGv3 45
MEM H21 -5.773 -1.448 -0.026 ETKDGv3 46
MEM H22 -7.107 0.520 0.660 ETKDGv3 47
MEM H23 -7.891 -0.330 -0.719 ETKDGv3 48
MEM H24 -6.996 1.211 -1.007 ETKDGv3 49
MEM H25 -5.607 -0.140 -2.570 ETKDGv3 50
MEM H26 -1.636 0.270 4.692 ETKDGv3 51
#