data_MF9
#
_chem_comp.id MF9
_chem_comp.name "(3S)-3-[(4-chlorophenyl)sulfanyl]butanoic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C10 H11 Cl O2 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-05-05
_chem_comp.pdbx_modified_date 2023-06-09
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 230.711
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code MF9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7FWE
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MF9 C01 C1 C 0 1 N N N N N N 6.835 6.101 17.359 -3.421 0.793 0.481 C01 MF9 1
MF9 C02 C2 C 0 1 N N N N N N 6.189 5.911 16.011 -3.930 -0.600 0.211 C02 MF9 2
MF9 C05 C3 C 0 1 N N S N N N 7.004 7.547 17.789 -1.897 0.761 0.616 C05 MF9 3
MF9 C06 C4 C 0 1 Y N N N N N 6.259 7.450 20.507 0.547 0.096 -0.574 C06 MF9 4
MF9 C07 C5 C 0 1 Y N N N N N 4.263 6.863 22.419 3.230 -0.196 0.037 C07 MF9 5
MF9 O08 O1 O 0 1 N N N N N N 5.572 6.867 15.449 -5.246 -0.814 0.055 O08 MF9 6
MF9 C10 C6 C 0 1 Y N N N N N 6.483 7.648 21.872 1.016 -1.104 -0.055 C10 MF9 7
MF9 C11 C7 C 0 1 Y N N N N N 4.960 7.051 20.117 1.428 1.150 -0.786 C11 MF9 8
MF9 C13 C8 C 0 1 Y N N N N N 5.540 7.338 22.835 2.355 -1.247 0.249 C13 MF9 9
MF9 S03 S1 S 0 1 N N N N N N 7.602 7.773 19.440 -1.160 0.280 -0.970 S03 MF9 10
MF9 O04 O2 O 0 1 N N N N N N 6.258 4.774 15.444 -3.154 -1.523 0.133 O04 MF9 11
MF9 CL09 CL1 CL 0 0 N N N N N N 3.065 6.469 23.575 4.914 -0.380 0.421 CL09 MF9 12
MF9 C12 C9 C 0 1 Y N N N N N 3.984 6.720 21.062 2.766 1.001 -0.480 C12 MF9 13
MF9 C14 C10 C 0 1 N N N N N N 7.921 8.229 16.853 -1.391 2.149 1.014 C14 MF9 14
MF9 H15 H1 H 0 1 N N N N N N 6.214 5.592 18.110 -3.699 1.448 -0.344 H15 MF9 15
MF9 H16 H2 H 0 1 N N N N N N 7.831 5.635 17.329 -3.860 1.166 1.406 H16 MF9 16
MF9 H17 H3 H 0 1 N N N N N N 6.021 8.040 17.755 -1.615 0.038 1.382 H17 MF9 17
MF9 H1 H4 H 0 1 N N N N N N 5.221 6.572 14.617 -5.525 -1.724 -0.117 H1 MF9 18
MF9 H19 H5 H 0 1 N N N N N N 7.430 8.060 22.188 0.333 -1.925 0.112 H19 MF9 19
MF9 H20 H6 H 0 1 N N N N N N 4.716 7.001 19.066 1.067 2.084 -1.190 H20 MF9 20
MF9 H22 H7 H 0 1 N N N N N N 5.768 7.454 23.884 2.720 -2.180 0.653 H22 MF9 21
MF9 H21 H8 H 0 1 N N N N N N 3.019 6.356 20.741 3.452 1.819 -0.644 H21 MF9 22
MF9 H25 H9 H 0 1 N N N N N N 8.047 9.278 17.161 -1.913 2.483 1.911 H25 MF9 23
MF9 H24 H10 H 0 1 N N N N N N 8.898 7.724 16.864 -0.321 2.102 1.212 H24 MF9 24
MF9 H23 H11 H 0 1 N N N N N N 7.501 8.193 15.837 -1.580 2.851 0.201 H23 MF9 25
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MF9 C01 C02 SING N N 1
MF9 C02 O04 DOUB N N 2
MF9 C01 C05 SING N N 3
MF9 S03 C05 SING N N 4
MF9 S03 C06 SING N N 5
MF9 C02 O08 SING N N 6
MF9 C07 CL09 SING N N 7
MF9 C06 C10 DOUB Y N 8
MF9 C06 C11 SING Y N 9
MF9 C07 C12 SING Y N 10
MF9 C11 C12 DOUB Y N 11
MF9 C07 C13 DOUB Y N 12
MF9 C10 C13 SING Y N 13
MF9 C05 C14 SING N N 14
MF9 C01 H15 SING N N 15
MF9 C01 H16 SING N N 16
MF9 C05 H17 SING N N 17
MF9 O08 H1 SING N N 18
MF9 C10 H19 SING N N 19
MF9 C11 H20 SING N N 20
MF9 C13 H22 SING N N 21
MF9 C12 H21 SING N N 22
MF9 C14 H25 SING N N 23
MF9 C14 H24 SING N N 24
MF9 C14 H23 SING N N 25
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MF9 SMILES ACDLabs 12.01 Clc1ccc(SC(C)CC(=O)O)cc1
MF9 InChI InChI 1.06 InChI=1S/C10H11ClO2S/c1-7(6-10(12)13)14-9-4-2-8(11)3-5-9/h2-5,7H,6H2,1H3,(H,12,13)/t7-/m0/s1
MF9 InChIKey InChI 1.06 DSCJEDOCSCNYAI-ZETCQYMHSA-N
MF9 SMILES_CANONICAL CACTVS 3.385 C[C@@H](CC(O)=O)Sc1ccc(Cl)cc1
MF9 SMILES CACTVS 3.385 C[CH](CC(O)=O)Sc1ccc(Cl)cc1
MF9 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 C[C@@H](CC(=O)O)Sc1ccc(cc1)Cl
MF9 SMILES "OpenEye OEToolkits" 2.0.7 CC(CC(=O)O)Sc1ccc(cc1)Cl
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MF9 "SYSTEMATIC NAME" ACDLabs 12.01 "(3S)-3-[(4-chlorophenyl)sulfanyl]butanoic acid"
MF9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(3~{S})-3-(4-chlorophenyl)sulfanylbutanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MF9 'Create component' 2023-05-05 RCSB
MF9 'Initial release' 2023-06-14 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
MF9 C01 C 5.598 2.768 1
MF9 C02 C 6.897 3.518 2
MF9 C05 C 5.598 1.268 3
MF9 C06 C 4.299 -0.983 4
MF9 C07 C 4.299 -3.982 5
MF9 O08 O 8.196 2.768 6
MF9 C10 C 5.598 -1.732 7
MF9 C11 C 3.000 -1.732 8
MF9 C13 C 5.598 -3.232 9
MF9 S03 S 4.299 0.517 10
MF9 O04 O 6.897 5.018 11
MF9 CL09 Cl 4.299 -5.482 12
MF9 C12 C 3.000 -3.232 13
MF9 C14 C 6.897 0.517 14
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
MF9 C01 C02 SINGLE NONE 1
MF9 C02 O04 DOUBLE NONE 2
MF9 C01 C05 SINGLE NONE 3
MF9 S03 C05 SINGLE NONE 4
MF9 S03 C06 SINGLE NONE 5
MF9 C02 O08 SINGLE NONE 6
MF9 C07 CL09 SINGLE NONE 7
MF9 C06 C10 DOUBLE NONE 8
MF9 C06 C11 SINGLE NONE 9
MF9 C07 C12 SINGLE NONE 10
MF9 C11 C12 DOUBLE NONE 11
MF9 C07 C13 DOUBLE NONE 12
MF9 C10 C13 SINGLE NONE 13
MF9 C05 C14 SINGLE BEGINDASH 14
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
MF9 MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
MF9 phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
MF9 C06 S1 1
MF9 C07 S1 1
MF9 C10 S1 1
MF9 C11 S1 1
MF9 C13 S1 1
MF9 C12 S1 1
MF9 C06 F1 1
MF9 C10 F1 1
MF9 C13 F1 1
MF9 C07 F1 1
MF9 C12 F1 1
MF9 C11 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id MF9
_pdbe_chem_comp_rdkit_properties.exactmw 230.017
_pdbe_chem_comp_rdkit_properties.amw 230.716
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 14
_pdbe_chem_comp_rdkit_properties.NumAtoms 25
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.300
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 107.815
_pdbe_chem_comp_rdkit_properties.tpsa 37.300
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.187
_pdbe_chem_comp_rdkit_properties.CrippenMR 59.594
_pdbe_chem_comp_rdkit_properties.chi0v 8.175
_pdbe_chem_comp_rdkit_properties.chi1v 4.450
_pdbe_chem_comp_rdkit_properties.chi2v 1.895
_pdbe_chem_comp_rdkit_properties.chi3v 1.895
_pdbe_chem_comp_rdkit_properties.chi4v 1.194
_pdbe_chem_comp_rdkit_properties.chi0n 17.603
_pdbe_chem_comp_rdkit_properties.chi1n 8.664
_pdbe_chem_comp_rdkit_properties.chi2n 0.991
_pdbe_chem_comp_rdkit_properties.chi3n 0.991
_pdbe_chem_comp_rdkit_properties.chi4n 0.557
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.670
_pdbe_chem_comp_rdkit_properties.kappa1 3.424
_pdbe_chem_comp_rdkit_properties.kappa2 5.270
_pdbe_chem_comp_rdkit_properties.kappa3 4.026
_pdbe_chem_comp_rdkit_properties.Phi 1.289
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
MF9 UniChem PDBe MF9
MF9 UniChem ZINC ZINC000005211284
MF9 UniChem PubChem 7557327
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
MF9 C01 -2.415 0.662 -1.198 ETKDGv3 1
MF9 C02 -3.309 1.424 -0.264 ETKDGv3 2
MF9 C05 -1.171 0.075 -0.504 ETKDGv3 3
MF9 C06 1.413 0.463 0.143 ETKDGv3 4
MF9 C07 3.816 -1.016 0.133 ETKDGv3 5
MF9 O08 -4.328 0.762 0.415 ETKDGv3 6
MF9 C10 1.832 -0.146 1.262 ETKDGv3 7
MF9 C11 2.222 0.369 -1.093 ETKDGv3 8
MF9 C13 3.088 -0.925 1.255 ETKDGv3 9
MF9 S03 -0.105 1.422 0.144 ETKDGv3 10
MF9 O04 -3.128 2.657 -0.079 ETKDGv3 11
MF9 CL09 5.307 -1.940 0.119 ETKDGv3 12
MF9 C12 3.361 -0.335 -1.098 ETKDGv3 13
MF9 C14 -1.547 -0.907 0.612 ETKDGv3 14
MF9 H15 -2.090 1.333 -2.023 ETKDGv3 15
MF9 H16 -3.000 -0.161 -1.663 ETKDGv3 16
MF9 H17 -0.606 -0.487 -1.280 ETKDGv3 17
MF9 H1 -4.933 1.260 1.057 ETKDGv3 18
MF9 H19 1.256 -0.073 2.175 ETKDGv3 19
MF9 H20 1.890 0.867 -1.996 ETKDGv3 20
MF9 H22 3.414 -1.418 2.162 ETKDGv3 21
MF9 H21 3.949 -0.405 -2.004 ETKDGv3 22
MF9 H25 -1.994 -0.370 1.476 ETKDGv3 23
MF9 H24 -2.275 -1.657 0.236 ETKDGv3 24
MF9 H23 -0.647 -1.453 0.962 ETKDGv3 25
#