data_MFO
#
_chem_comp.id MFO
_chem_comp.name
"[(2~{R},3~{S},5~{R})-5-[2-azanyl-8-[ethanoyl(naphthalen-2-yl)amino]-6-oxidanylidene-3~{H}-purin-9-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate"
_chem_comp.type "DNA linking"
_chem_comp.pdbx_type ATOMN
_chem_comp.formula "C22 H23 N6 O8 P"
_chem_comp.mon_nstd_parent_comp_id DG
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2016-04-06
_chem_comp.pdbx_modified_date 2019-05-07
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 530.427
_chem_comp.one_letter_code G
_chem_comp.three_letter_code MFO
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5G33
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MFO C6 C1 C 0 1 N N N N N N 24.559 54.356 -28.776 0.394 -4.217 -0.064 C6 MFO 1
MFO C5 C2 C 0 1 Y N N N N N 23.754 55.443 -29.363 0.655 -2.812 0.259 C5 MFO 2
MFO C4 C3 C 0 1 Y N N N N N 22.979 56.302 -28.432 -0.253 -1.858 -0.182 C4 MFO 3
MFO C8 C4 C 0 1 Y N N N N N 22.694 56.917 -30.440 1.379 -0.877 0.926 C8 MFO 4
MFO N4 N1 N 0 1 N N N N N N 22.216 57.631 -31.501 2.167 0.102 1.520 N4 MFO 5
MFO C2 C5 C 0 1 N N N N N N 23.825 55.025 -26.651 -1.543 -3.585 -1.168 C2 MFO 6
MFO C21 C6 C 0 1 Y N N N N N 25.402 55.476 -34.447 6.541 -0.276 -0.538 C21 MFO 7
MFO C10 C7 C 0 1 N N N N N N 19.901 58.267 -31.372 0.834 -0.184 3.584 C10 MFO 8
MFO C9 C8 C 0 1 N N N N N N 21.358 58.631 -31.280 1.905 0.505 2.779 C9 MFO 9
MFO C12 C9 C 0 1 Y N N N N N 22.614 57.252 -32.797 3.232 0.670 0.810 C12 MFO 10
MFO C20 C10 C 0 1 Y N N N N N 25.801 55.076 -35.721 7.557 0.310 -1.228 C20 MFO 11
MFO N3 N2 N 0 1 N N N N N N 23.058 56.042 -27.110 -1.349 -2.268 -0.896 N3 MFO 12
MFO C15 C11 C 0 1 Y N N N N N 23.393 56.457 -35.352 5.325 1.835 -0.600 C15 MFO 13
MFO C14 C12 C 0 1 Y N N N N N 22.197 57.145 -35.175 4.185 2.589 -0.272 C14 MFO 14
MFO C13 C13 C 0 1 Y N N N N N 21.805 57.537 -33.897 3.166 2.012 0.418 C13 MFO 15
MFO N1 N3 N 0 1 N N N N N N 24.544 54.211 -27.445 -0.707 -4.520 -0.768 N1 MFO 16
MFO C19 C14 C 0 1 Y N N N N N 24.992 55.371 -36.815 7.483 1.647 -1.614 C19 MFO 17
MFO C18 C15 C 0 1 Y N N N N N 23.792 56.059 -36.629 6.394 2.405 -1.312 C18 MFO 18
MFO N2 N4 N 0 1 N N N N N N 23.858 54.823 -25.319 -2.651 -3.954 -1.884 N2 MFO 19
MFO C17 C16 C 0 1 Y N N N N N 23.810 56.559 -32.982 4.331 -0.100 0.499 C17 MFO 20
MFO C16 C17 C 0 1 Y N N N N N 24.202 56.165 -34.258 5.400 0.475 -0.207 C16 MFO 21
MFO P P1 P 0 1 N N N N N N 23.995 60.717 -24.235 -6.232 1.201 0.267 P MFO 22
MFO OP1 O1 O 0 1 N Y N N N N 24.019 62.141 -23.741 -6.870 2.197 -0.623 OP1 MFO 23
MFO "O5'" O2 O 0 1 N N N N N N 22.888 60.505 -25.408 -4.639 1.432 0.276 "O5'" MFO 24
MFO "C5'" C18 C 0 1 N N N N N N 21.872 59.491 -25.324 -3.848 1.451 -0.914 "C5'" MFO 25
MFO "C4'" C19 C 0 1 N N R N N N 21.104 59.290 -26.636 -2.382 1.692 -0.548 "C4'" MFO 26
MFO "C3'" C20 C 0 1 N N S N N N 20.311 57.993 -26.656 -1.521 1.803 -1.826 "C3'" MFO 27
MFO "O3'" O3 O 0 1 N N N N N N 19.011 58.125 -26.081 -1.287 3.174 -2.155 "O3'" MFO 28
MFO "C2'" C21 C 0 1 N N N N N N 20.217 57.621 -28.124 -0.196 1.104 -1.448 "C2'" MFO 29
MFO "C1'" C22 C 0 1 N N R N N N 21.414 58.295 -28.756 -0.414 0.653 0.014 "C1'" MFO 30
MFO "O4'" O4 O 0 1 N N N N N N 21.966 59.180 -27.771 -1.848 0.553 0.162 "O4'" MFO 31
MFO N9 N5 N 0 1 Y N N N N N 22.341 57.211 -29.184 0.215 -0.650 0.245 N9 MFO 32
MFO N7 N6 N 0 1 Y N N N N N 23.533 55.876 -30.619 1.636 -2.160 0.932 N7 MFO 33
MFO O6 O5 O 0 1 N N N N N N 25.235 53.611 -29.522 1.164 -5.093 0.296 O6 MFO 34
MFO OP2 O6 O 0 1 N Y N N N N 23.831 59.712 -23.123 -6.808 1.371 1.761 OP2 MFO 35
MFO O11 O7 O 0 1 N N N N N N 21.736 59.761 -31.006 2.532 1.423 3.264 O11 MFO 36
MFO O1 O8 O 0 1 N Y N N N N 25.377 60.437 -24.958 -6.556 -0.282 -0.268 O1 MFO 37
MFO H1 H1 H 0 1 N N N N N N 26.028 55.251 -33.596 6.610 -1.315 -0.249 H1 MFO 38
MFO H2 H2 H 0 1 N N N N N N 19.287 59.154 -31.159 0.321 -0.914 2.957 H2 MFO 39
MFO H3 H3 H 0 1 N N N N N N 19.678 57.901 -32.385 1.288 -0.691 4.435 H3 MFO 40
MFO H4 H4 H 0 1 N N N N N N 19.673 57.479 -30.639 0.116 0.554 3.941 H4 MFO 41
MFO H5 H5 H 0 1 N N N N N N 26.730 54.542 -35.858 8.433 -0.269 -1.480 H5 MFO 42
MFO H6 H6 H 0 1 N N N N N N 22.545 56.606 -26.463 -1.992 -1.613 -1.210 H6 MFO 43
MFO H7 H7 H 0 1 N N N N N N 21.574 57.375 -36.027 4.119 3.626 -0.567 H7 MFO 44
MFO H8 H8 H 0 1 N N N N N N 20.872 58.063 -33.757 2.293 2.597 0.667 H8 MFO 45
MFO H9 H9 H 0 1 N N N N N N 25.293 55.068 -37.807 8.303 2.089 -2.161 H9 MFO 46
MFO H10 H10 H 0 1 N N N N N N 23.167 56.285 -37.480 6.351 3.440 -1.618 H10 MFO 47
MFO H11 H11 H 0 1 N N N N N N 24.409 54.080 -24.939 -3.279 -3.280 -2.187 H11 MFO 48
MFO H12 H12 H 0 1 N N N N N N 23.331 55.416 -24.710 -2.807 -4.890 -2.088 H12 MFO 49
MFO H13 H13 H 0 1 N N N N N N 24.434 56.327 -32.132 4.375 -1.135 0.805 H13 MFO 50
MFO H14 H14 H 0 1 N N N N N N 21.155 59.779 -24.541 -3.942 0.495 -1.428 H14 MFO 51
MFO H15 H15 H 0 1 N N N N N N 22.351 58.539 -25.051 -4.196 2.251 -1.568 H15 MFO 52
MFO H16 H16 H 0 1 N N N N N N 20.410 60.133 -26.770 -2.285 2.595 0.054 H16 MFO 53
MFO H17 H17 H 0 1 N N N N N N 20.883 57.217 -26.127 -2.003 1.288 -2.657 H17 MFO 54
MFO H18 H18 H 0 1 N N N N N N 19.092 58.358 -25.164 -0.751 3.302 -2.949 H18 MFO 55
MFO H19 H19 H 0 1 N N N N N N 19.281 57.997 -28.562 -0.022 0.242 -2.091 H19 MFO 56
MFO H20 H20 H 0 1 N N N N N N 20.270 56.530 -28.254 0.637 1.803 -1.514 H20 MFO 57
MFO H21 H21 H 0 1 N N N N N N 21.084 58.865 -29.637 -0.013 1.396 0.704 H21 MFO 58
MFO H22 H22 H 0 1 N N N N N N 23.771 60.167 -22.291 -7.764 1.245 1.831 H22 MFO 59
MFO H23 H23 H 0 1 N N N N N N 25.916 61.218 -24.924 -6.169 -0.988 0.269 H23 MFO 60
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MFO C19 C18 DOUB Y N 1
MFO C19 C20 SING Y N 2
MFO C18 C15 SING Y N 3
MFO C20 C21 DOUB Y N 4
MFO C15 C14 DOUB Y N 5
MFO C15 C16 SING Y N 6
MFO C14 C13 SING Y N 7
MFO C21 C16 SING Y N 8
MFO C16 C17 DOUB Y N 9
MFO C13 C12 DOUB Y N 10
MFO C17 C12 SING Y N 11
MFO C12 N4 SING N N 12
MFO N4 C9 SING N N 13
MFO N4 C8 SING N N 14
MFO C10 C9 SING N N 15
MFO C9 O11 DOUB N N 16
MFO N7 C8 DOUB Y N 17
MFO N7 C5 SING Y N 18
MFO C8 N9 SING Y N 19
MFO O6 C6 DOUB N N 20
MFO C5 C6 SING N N 21
MFO C5 C4 DOUB Y N 22
MFO N9 "C1'" SING N N 23
MFO N9 C4 SING Y N 24
MFO C6 N1 SING N N 25
MFO "C1'" "C2'" SING N N 26
MFO "C1'" "O4'" SING N N 27
MFO C4 N3 SING N N 28
MFO "C2'" "C3'" SING N N 29
MFO "O4'" "C4'" SING N N 30
MFO N1 C2 DOUB N N 31
MFO N3 C2 SING N N 32
MFO "C3'" "C4'" SING N N 33
MFO "C3'" "O3'" SING N N 34
MFO C2 N2 SING N N 35
MFO "C4'" "C5'" SING N N 36
MFO "O5'" "C5'" SING N N 37
MFO "O5'" P SING N N 38
MFO P OP1 DOUB N N 39
MFO P OP2 SING N N 40
MFO P O1 SING N N 41
MFO C21 H1 SING N N 42
MFO C10 H2 SING N N 43
MFO C10 H3 SING N N 44
MFO C10 H4 SING N N 45
MFO C20 H5 SING N N 46
MFO N3 H6 SING N N 47
MFO C14 H7 SING N N 48
MFO C13 H8 SING N N 49
MFO C19 H9 SING N N 50
MFO C18 H10 SING N N 51
MFO N2 H11 SING N N 52
MFO N2 H12 SING N N 53
MFO C17 H13 SING N N 54
MFO "C5'" H14 SING N N 55
MFO "C5'" H15 SING N N 56
MFO "C4'" H16 SING N N 57
MFO "C3'" H17 SING N N 58
MFO "O3'" H18 SING N N 59
MFO "C2'" H19 SING N N 60
MFO "C2'" H20 SING N N 61
MFO "C1'" H21 SING N N 62
MFO OP2 H22 SING N N 63
MFO O1 H23 SING N N 64
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MFO InChI InChI 1.03 InChI=1S/C22H23N6O8P/c1-11(29)27(14-7-6-12-4-2-3-5-13(12)8-14)22-24-18-19(25-21(23)26-20(18)31)28(22)17-9-15(30)16(36-17)10-35-37(32,33)34/h2-8,15-17,30H,9-10H2,1H3,(H2,32,33,34)(H3,23,25,26,31)/t15-,16+,17+/m0/s1
MFO InChIKey InChI 1.03 AEEKNUIQRYLODW-GVDBMIGSSA-N
MFO SMILES_CANONICAL CACTVS 3.385 CC(=O)N(c1ccc2ccccc2c1)c3nc4C(=O)N=C(N)Nc4n3[C@H]5C[C@H](O)[C@@H](CO[P](O)(O)=O)O5
MFO SMILES CACTVS 3.385 CC(=O)N(c1ccc2ccccc2c1)c3nc4C(=O)N=C(N)Nc4n3[CH]5C[CH](O)[CH](CO[P](O)(O)=O)O5
MFO SMILES_CANONICAL "OpenEye OEToolkits" 2.0.5 CC(=O)N(c1ccc2ccccc2c1)c3nc4c(n3[C@H]5C[C@@H]([C@H](O5)COP(=O)(O)O)O)NC(=NC4=O)N
MFO SMILES "OpenEye OEToolkits" 2.0.5 CC(=O)N(c1ccc2ccccc2c1)c3nc4c(n3C5CC(C(O5)COP(=O)(O)O)O)NC(=NC4=O)N
#
_pdbx_chem_comp_identifier.comp_id MFO
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.5
_pdbx_chem_comp_identifier.identifier
"[(2~{R},3~{S},5~{R})-5-[2-azanyl-8-[ethanoyl(naphthalen-2-yl)amino]-6-oxidanylidene-3~{H}-purin-9-yl]-3-oxidanyl-oxolan-2-yl]methyl dihydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MFO 'Create component' 2016-04-06 EBI
MFO 'Other modification' 2016-04-21 EBI
MFO 'Other modification' 2016-04-22 EBI
MFO 'Initial release' 2016-06-01 RCSB
MFO 'Other modification' 2016-06-02 RCSB
MFO 'Modify one letter code' 2019-05-07 EBI
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
MFO C6 C 9.152 4.990 1
MFO C5 C 9.902 3.691 2
MFO C4 C 9.152 2.392 3
MFO C8 C 11.514 1.894 4
MFO N4 N 12.813 1.144 5
MFO C2 C 6.902 3.691 6
MFO C21 C 18.051 1.092 7
MFO C10 C 11.849 -1.505 8
MFO C9 C 12.813 -0.356 9
MFO C12 C 14.112 1.894 10
MFO C20 C 19.410 1.863 11
MFO N3 N 7.652 2.392 12
MFO C15 C 16.710 3.394 13
MFO C14 C 15.412 4.144 14
MFO C13 C 14.112 3.394 15
MFO N1 N 7.652 4.990 16
MFO C19 C 19.410 3.425 17
MFO C18 C 18.051 4.196 18
MFO N2 N 5.402 3.691 19
MFO C17 C 15.412 1.144 20
MFO C16 C 16.710 1.894 21
MFO P P 4.518 -4.165 22
MFO OP1 O 3.128 -4.729 23
MFO "O5'" O 5.907 -3.601 24
MFO "C5'" C 6.114 -2.115 25
MFO "C4'" C 7.503 -1.551 26
MFO "C3'" C 8.777 -2.343 27
MFO "O3'" O 8.884 -3.839 28
MFO "C2'" C 9.924 -1.377 29
MFO "C1'" C 9.360 0.013 30
MFO "O4'" O 7.864 -0.095 31
MFO N9 N 10.153 1.286 32
MFO N7 N 11.360 3.377 33
MFO O6 O 9.902 6.289 34
MFO OP2 O 5.082 -5.555 35
MFO O11 O 14.112 -1.106 36
MFO O1 O 3.953 -2.775 37
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
MFO C19 C18 DOUBLE NONE 1
MFO C19 C20 SINGLE NONE 2
MFO C18 C15 SINGLE NONE 3
MFO C20 C21 DOUBLE NONE 4
MFO C15 C14 SINGLE NONE 5
MFO C15 C16 DOUBLE NONE 6
MFO C14 C13 DOUBLE NONE 7
MFO C21 C16 SINGLE NONE 8
MFO C16 C17 SINGLE NONE 9
MFO C13 C12 SINGLE NONE 10
MFO C17 C12 DOUBLE NONE 11
MFO C12 N4 SINGLE NONE 12
MFO N4 C9 SINGLE NONE 13
MFO N4 C8 SINGLE NONE 14
MFO C10 C9 SINGLE NONE 15
MFO C9 O11 DOUBLE NONE 16
MFO N7 C8 DOUBLE NONE 17
MFO N7 C5 SINGLE NONE 18
MFO C8 N9 SINGLE NONE 19
MFO O6 C6 DOUBLE NONE 20
MFO C5 C6 SINGLE NONE 21
MFO C5 C4 DOUBLE NONE 22
MFO "C1'" N9 SINGLE BEGINWEDGE 23
MFO N9 C4 SINGLE NONE 24
MFO C6 N1 SINGLE NONE 25
MFO "C1'" "C2'" SINGLE NONE 26
MFO "C1'" "O4'" SINGLE NONE 27
MFO C4 N3 SINGLE NONE 28
MFO "C2'" "C3'" SINGLE NONE 29
MFO "O4'" "C4'" SINGLE NONE 30
MFO N1 C2 DOUBLE NONE 31
MFO N3 C2 SINGLE NONE 32
MFO "C3'" "C4'" SINGLE NONE 33
MFO "C3'" "O3'" SINGLE BEGINDASH 34
MFO C2 N2 SINGLE NONE 35
MFO "C4'" "C5'" SINGLE BEGINWEDGE 36
MFO "O5'" "C5'" SINGLE NONE 37
MFO "O5'" P SINGLE NONE 38
MFO P OP1 DOUBLE NONE 39
MFO P OP2 SINGLE NONE 40
MFO P O1 SINGLE NONE 41
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
MFO MurckoScaffold S1 scaffold 'O=c1nc[nH]c2c1nc(Nc1ccc3ccccc3c1)n2[C@H]1CCCO1' InChI=1S/C19H17N5O2/c25-18-16-17(20-11-21-18)24(15-6-3-9-26-15)19(23-16)22-14-8-7-12-4-1-2-5-13(12)10-14/h1-2,4-5,7-8,10-11,15H,3,6,9H2,(H,22,23)(H,20,21,25)/t15-/m1/s1 MXUIZSGVGUUHOU-OAHLLOKOSA-N
MFO amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
MFO deoxyribose F2 fragment 'OCC1OC[CH2]C1O' InChI=1S/C5H10O3/c6-3-5-4(7)1-2-8-5/h4-7H,1-3H2 NSMOSDAEGJTOIQ-UHFFFAOYSA-N
MFO imidazole F3 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
MFO napthalene F4 fragment c1ccc2ccccc2c1 InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H UFWIBTONFRDIAS-UHFFFAOYSA-N
MFO phenyl F5 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
MFO phosphate F6 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
MFO purine F7 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
MFO pyrimidine F8 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
MFO C6 S1 1
MFO C5 S1 1
MFO C4 S1 1
MFO C8 S1 1
MFO N4 S1 1
MFO C2 S1 1
MFO C21 S1 1
MFO C12 S1 1
MFO C20 S1 1
MFO N3 S1 1
MFO C15 S1 1
MFO C14 S1 1
MFO C13 S1 1
MFO N1 S1 1
MFO C19 S1 1
MFO C18 S1 1
MFO C17 S1 1
MFO C16 S1 1
MFO "C4'" S1 1
MFO "C3'" S1 1
MFO "C2'" S1 1
MFO "C1'" S1 1
MFO "O4'" S1 1
MFO N9 S1 1
MFO N7 S1 1
MFO O6 S1 1
MFO N4 F1 1
MFO C9 F1 1
MFO O11 F1 1
MFO C10 F1 1
MFO "C1'" F2 1
MFO "C2'" F2 1
MFO "C3'" F2 1
MFO "O3'" F2 1
MFO "C4'" F2 1
MFO "O4'" F2 1
MFO "C5'" F2 1
MFO "O5'" F2 1
MFO C5 F3 1
MFO C4 F3 1
MFO N9 F3 1
MFO C8 F3 1
MFO N7 F3 1
MFO C12 F4 1
MFO C13 F4 1
MFO C14 F4 1
MFO C15 F4 1
MFO C16 F4 1
MFO C17 F4 1
MFO C21 F4 1
MFO C20 F4 1
MFO C19 F4 1
MFO C18 F4 1
MFO C21 F5 1
MFO C20 F5 1
MFO C19 F5 1
MFO C18 F5 1
MFO C15 F5 1
MFO C16 F5 1
MFO C12 F5 2
MFO C13 F5 2
MFO C14 F5 2
MFO C15 F5 2
MFO C16 F5 2
MFO C17 F5 2
MFO "O5'" F6 1
MFO P F6 1
MFO OP1 F6 1
MFO OP2 F6 1
MFO O1 F6 1
MFO N7 F7 1
MFO C8 F7 1
MFO N9 F7 1
MFO C4 F7 1
MFO C5 F7 1
MFO C6 F7 1
MFO N1 F7 1
MFO C2 F7 1
MFO N3 F7 1
MFO C5 F8 1
MFO C6 F8 1
MFO N1 F8 1
MFO C2 F8 1
MFO N3 F8 1
MFO C4 F8 1
#
_pdbe_chem_comp_rdkit_properties.comp_id MFO
_pdbe_chem_comp_rdkit_properties.exactmw 530.131
_pdbe_chem_comp_rdkit_properties.amw 530.434
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 14
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 12
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 37
_pdbe_chem_comp_rdkit_properties.NumAtoms 60
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 15
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.273
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 240.809
_pdbe_chem_comp_rdkit_properties.tpsa 206.120
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.199
_pdbe_chem_comp_rdkit_properties.CrippenMR 125.083
_pdbe_chem_comp_rdkit_properties.chi0v 18.291
_pdbe_chem_comp_rdkit_properties.chi1v 10.823
_pdbe_chem_comp_rdkit_properties.chi2v 4.702
_pdbe_chem_comp_rdkit_properties.chi3v 4.702
_pdbe_chem_comp_rdkit_properties.chi4v 3.206
_pdbe_chem_comp_rdkit_properties.chi0n 40.396
_pdbe_chem_comp_rdkit_properties.chi1n 20.428
_pdbe_chem_comp_rdkit_properties.chi2n 4.388
_pdbe_chem_comp_rdkit_properties.chi3n 4.388
_pdbe_chem_comp_rdkit_properties.chi4n 3.012
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.650
_pdbe_chem_comp_rdkit_properties.kappa1 9.583
_pdbe_chem_comp_rdkit_properties.kappa2 9.338
_pdbe_chem_comp_rdkit_properties.kappa3 4.854
_pdbe_chem_comp_rdkit_properties.Phi 2.419
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
MFO UniChem PDBe MFO
MFO UniChem ZINC ZINC000584905623
MFO UniChem PubChem 137349744
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
MFO C6 -0.431 -4.157 0.020 ETKDGv3 1
MFO C5 -0.659 -2.772 -0.385 ETKDGv3 2
MFO C4 0.321 -2.064 -0.877 ETKDGv3 3
MFO C8 -1.432 -0.780 -0.544 ETKDGv3 4
MFO N4 -2.303 0.359 -0.454 ETKDGv3 5
MFO C2 1.866 -3.979 -0.643 ETKDGv3 6
MFO C21 -6.436 1.643 2.043 ETKDGv3 7
MFO C10 -2.212 0.759 -2.985 ETKDGv3 8
MFO C9 -2.470 1.236 -1.588 ETKDGv3 9
MFO C12 -3.007 0.602 0.781 ETKDGv3 10
MFO C20 -7.080 1.851 3.198 ETKDGv3 11
MFO N3 1.640 -2.604 -1.021 ETKDGv3 12
MFO C15 -4.376 1.040 3.227 ETKDGv3 13
MFO C14 -2.960 0.614 3.235 ETKDGv3 14
MFO C13 -2.314 0.406 2.082 ETKDGv3 15
MFO N1 0.889 -4.701 -0.155 ETKDGv3 16
MFO C19 -6.378 1.657 4.484 ETKDGv3 17
MFO C18 -5.096 1.273 4.500 ETKDGv3 18
MFO N2 3.163 -4.555 -0.795 ETKDGv3 19
MFO C17 -4.299 0.984 0.777 ETKDGv3 20
MFO C16 -5.017 1.218 2.050 ETKDGv3 21
MFO P 6.763 0.526 -2.041 ETKDGv3 22
MFO OP1 6.927 -0.921 -1.636 ETKDGv3 23
MFO "O5'" 5.339 1.165 -1.353 ETKDGv3 24
MFO "C5'" 4.234 0.499 -1.918 ETKDGv3 25
MFO "C4'" 2.945 1.011 -1.268 ETKDGv3 26
MFO "C3'" 2.883 0.709 0.224 ETKDGv3 27
MFO "O3'" 3.443 1.759 0.968 ETKDGv3 28
MFO "C2'" 1.401 0.576 0.483 ETKDGv3 29
MFO "C1'" 0.792 0.468 -0.916 ETKDGv3 30
MFO "O4'" 1.829 0.400 -1.867 ETKDGv3 31
MFO N9 -0.079 -0.707 -1.033 ETKDGv3 32
MFO N7 -1.802 -1.964 -0.152 ETKDGv3 33
MFO O6 -1.354 -4.854 0.517 ETKDGv3 34
MFO OP2 6.705 0.635 -3.730 ETKDGv3 35
MFO O11 -2.808 2.438 -1.409 ETKDGv3 36
MFO O1 8.092 1.407 -1.475 ETKDGv3 37
MFO H1 -6.956 1.786 1.104 ETKDGv3 38
MFO H2 -2.801 1.361 -3.709 ETKDGv3 39
MFO H3 -1.134 0.862 -3.226 ETKDGv3 40
MFO H4 -2.514 -0.304 -3.089 ETKDGv3 41
MFO H5 -8.116 2.162 3.193 ETKDGv3 42
MFO H6 2.419 -2.027 -1.402 ETKDGv3 43
MFO H7 -2.441 0.471 4.174 ETKDGv3 44
MFO H8 -1.276 0.101 2.101 ETKDGv3 45
MFO H9 -6.905 1.828 5.414 ETKDGv3 46
MFO H10 -4.588 1.133 5.446 ETKDGv3 47
MFO H11 3.951 -3.987 -1.178 ETKDGv3 48
MFO H12 3.338 -5.548 -0.523 ETKDGv3 49
MFO H13 -4.830 1.106 -0.159 ETKDGv3 50
MFO H14 4.305 -0.601 -1.763 ETKDGv3 51
MFO H15 4.172 0.710 -3.009 ETKDGv3 52
MFO H16 2.876 2.112 -1.438 ETKDGv3 53
MFO H17 3.395 -0.256 0.454 ETKDGv3 54
MFO H18 3.519 1.432 1.902 ETKDGv3 55
MFO H19 0.997 1.472 1.004 ETKDGv3 56
MFO H20 1.197 -0.321 1.110 ETKDGv3 57
MFO H21 0.201 1.386 -1.124 ETKDGv3 58
MFO H22 6.580 1.599 -3.916 ETKDGv3 59
MFO H23 7.890 2.347 -1.713 ETKDGv3 60
#