data_MI0
#
_chem_comp.id MI0
_chem_comp.name (3R,4S)-4-azanyl-5-cyclohexyl-2,2-difluoro-3-hydroxy-N-methyl-pentanamide
_chem_comp.type peptide-like
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H22 F2 N2 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2010-11-09
_chem_comp.pdbx_modified_date 2012-01-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 264.312
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code MI0
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1FQ8
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MI0 F1 F1 F 0 1 N N N N N N -15.800 67.308 39.273 2.053 -0.723 1.390 F1 MI0 1
MI0 F2 F2 F 0 1 N N N N N N -14.287 67.312 40.685 1.867 -1.722 -0.656 F2 MI0 2
MI0 N1 N1 N 0 1 N N N N N N -17.416 64.802 38.888 -0.324 -0.192 1.613 N1 MI0 3
MI0 N2 N2 N 0 1 N N N N N N -15.652 68.532 42.361 4.524 -0.317 0.242 N2 MI0 4
MI0 O1 O1 O 0 1 N N N N N N -14.739 64.715 40.095 1.223 1.747 0.217 O1 MI0 5
MI0 O2 O2 O 0 1 N N N N N N -17.210 68.522 40.784 3.463 0.883 -1.293 O2 MI0 6
MI0 C1 C1 C 0 1 N N S N N N -17.182 64.899 40.304 -0.384 -0.057 0.151 C1 MI0 7
MI0 C2 C2 C 0 1 N N N N N N -17.445 63.537 40.990 -1.499 0.921 -0.225 C2 MI0 8
MI0 C3 C3 C 0 1 N N N N N N -18.788 62.897 40.743 -2.852 0.331 0.176 C3 MI0 9
MI0 C4 C4 C 0 1 N N N N N N -19.975 63.730 41.202 -3.133 -0.918 -0.662 C4 MI0 10
MI0 C5 C5 C 0 1 N N N N N N -18.805 61.447 41.222 -3.953 1.366 -0.066 C5 MI0 11
MI0 C6 C6 C 0 1 N N N N N N -21.271 63.008 40.792 -4.487 -1.508 -0.261 C6 MI0 12
MI0 C7 C7 C 0 1 N N N N N N -20.124 60.749 40.920 -5.306 0.776 0.335 C7 MI0 13
MI0 C8 C8 C 0 1 N N N N N N -21.292 61.603 41.410 -5.587 -0.472 -0.503 C8 MI0 14
MI0 C9 C9 C 0 1 N N R N N N -15.823 65.413 40.723 0.954 0.471 -0.368 C9 MI0 15
MI0 C10 C10 C 0 1 N N N N N N -15.569 66.897 40.569 2.069 -0.507 0.008 C10 MI0 16
MI0 C11 C11 C 0 1 N N N N N N -16.389 67.852 41.475 3.401 0.070 -0.395 C11 MI0 17
MI0 C12 C12 C 0 1 N N N N N N -16.287 69.117 43.550 5.819 0.245 -0.149 C12 MI0 18
MI0 H1 H1 H 0 1 N N N N N N -18.339 64.454 38.725 -0.239 0.711 2.056 H1 MI0 19
MI0 H2 H2 H 0 1 N N N N N N -13.913 65.078 40.393 1.277 1.733 1.182 H2 MI0 20
MI0 H3 H3 H 0 1 N N N N N N -17.897 65.666 40.637 -0.589 -1.030 -0.295 H3 MI0 21
MI0 H4 H4 H 0 1 N N N N N N -16.681 62.837 40.621 -1.345 1.865 0.297 H4 MI0 22
MI0 H5 H5 H 0 1 N N N N N N -17.359 63.700 42.075 -1.483 1.094 -1.301 H5 MI0 23
MI0 H6 H6 H 0 1 N N N N N N -18.927 62.865 39.652 -2.833 0.062 1.233 H6 MI0 24
MI0 H7 H7 H 0 1 N N N N N N -19.945 63.848 42.295 -3.153 -0.649 -1.718 H7 MI0 25
MI0 H8 H8 H 0 1 N N N N N N -19.937 64.723 40.730 -2.350 -1.655 -0.489 H8 MI0 26
MI0 H9 H9 H 0 1 N N N N N N -17.997 60.902 40.712 -3.752 2.256 0.531 H9 MI0 27
MI0 H10 H10 H 0 1 N N N N N N -18.647 61.438 42.311 -3.972 1.635 -1.122 H10 MI0 28
MI0 H11 H11 H 0 1 N N N N N N -22.139 63.580 41.152 -4.687 -2.397 -0.858 H11 MI0 29
MI0 H12 H12 H 0 1 N N N N N N -21.314 62.927 39.696 -4.467 -1.776 0.795 H12 MI0 30
MI0 H13 H13 H 0 1 N N N N N N -20.215 60.598 39.834 -5.286 0.508 1.391 H13 MI0 31
MI0 H14 H14 H 0 1 N N N N N N -20.146 59.776 41.432 -6.089 1.514 0.162 H14 MI0 32
MI0 H15 H15 H 0 1 N N N N N N -21.225 61.698 42.504 -5.606 -0.204 -1.560 H15 MI0 33
MI0 H16 H16 H 0 1 N N N N N N -22.233 61.108 41.128 -6.551 -0.893 -0.218 H16 MI0 34
MI0 H17 H17 H 0 1 N N N N N N -15.856 65.209 41.803 0.909 0.571 -1.453 H17 MI0 35
MI0 H18 H18 H 0 1 N N N N N N -15.527 69.633 44.155 6.604 -0.184 0.473 H18 MI0 36
MI0 H19 H19 H 0 1 N N N N N N -17.058 69.837 43.237 6.016 0.010 -1.195 H19 MI0 37
MI0 H20 H20 H 0 1 N N N N N N -16.752 68.319 44.148 5.801 1.327 -0.018 H20 MI0 38
MI0 H21 H21 H 0 1 N N N N N N -14.669 68.642 42.214 4.474 -0.967 0.961 H21 MI0 39
MI0 H22 H22 H 0 1 N Y N N N N -17.323 65.707 38.472 -1.126 -0.693 1.964 H22 MI0 40
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MI0 F1 C10 SING N N 1
MI0 N1 C1 SING N N 2
MI0 N1 H1 SING N N 3
MI0 N2 C12 SING N N 4
MI0 N2 H21 SING N N 5
MI0 O1 C9 SING N N 6
MI0 O1 H2 SING N N 7
MI0 O2 C11 DOUB N N 8
MI0 C1 C9 SING N N 9
MI0 C1 C2 SING N N 10
MI0 C1 H3 SING N N 11
MI0 C2 H4 SING N N 12
MI0 C2 H5 SING N N 13
MI0 C3 C2 SING N N 14
MI0 C3 C4 SING N N 15
MI0 C3 C5 SING N N 16
MI0 C3 H6 SING N N 17
MI0 C4 H7 SING N N 18
MI0 C4 H8 SING N N 19
MI0 C5 H9 SING N N 20
MI0 C5 H10 SING N N 21
MI0 C6 C4 SING N N 22
MI0 C6 C8 SING N N 23
MI0 C6 H11 SING N N 24
MI0 C6 H12 SING N N 25
MI0 C7 C5 SING N N 26
MI0 C7 C8 SING N N 27
MI0 C7 H13 SING N N 28
MI0 C7 H14 SING N N 29
MI0 C8 H15 SING N N 30
MI0 C8 H16 SING N N 31
MI0 C9 H17 SING N N 32
MI0 C10 F2 SING N N 33
MI0 C10 C9 SING N N 34
MI0 C10 C11 SING N N 35
MI0 C11 N2 SING N N 36
MI0 C12 H18 SING N N 37
MI0 C12 H19 SING N N 38
MI0 C12 H20 SING N N 39
MI0 N1 H22 SING N N 40
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MI0 SMILES ACDLabs 12.01 O=C(NC)C(F)(F)C(O)C(N)CC1CCCCC1
MI0 SMILES_CANONICAL CACTVS 3.370 CNC(=O)C(F)(F)[C@H](O)[C@@H](N)CC1CCCCC1
MI0 SMILES CACTVS 3.370 CNC(=O)C(F)(F)[CH](O)[CH](N)CC1CCCCC1
MI0 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 CNC(=O)C([C@@H]([C@H](CC1CCCCC1)N)O)(F)F
MI0 SMILES "OpenEye OEToolkits" 1.7.0 CNC(=O)C(C(C(CC1CCCCC1)N)O)(F)F
MI0 InChI InChI 1.03 InChI=1S/C12H22F2N2O2/c1-16-11(18)12(13,14)10(17)9(15)7-8-5-3-2-4-6-8/h8-10,17H,2-7,15H2,1H3,(H,16,18)/t9-,10+/m0/s1
MI0 InChIKey InChI 1.03 ZJXKKRMJDAUFQJ-VHSXEESVSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MI0 "SYSTEMATIC NAME" ACDLabs 12.01 "(3R,4S)-4-amino-5-cyclohexyl-2,2-difluoro-3-hydroxy-N-methylpentanamide (non-preferred name)"
MI0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.0 (3R,4S)-4-azanyl-5-cyclohexyl-2,2-difluoro-3-hydroxy-N-methyl-pentanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MI0 'Create component' 2010-11-09 RCSB
MI0 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.09.6 'Core functionality.'
pdbeccdutils 0.8.6 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
MI0 F1 F 6.147 3.549 1
MI0 F2 F 7.647 0.951 2
MI0 N1 N 6.897 -0.750 3
MI0 N2 N 8.196 4.500 4
MI0 O1 O 4.299 2.250 5
MI0 O2 O 9.495 2.250 6
MI0 C1 C 5.598 0.000 7
MI0 C2 C 4.299 -0.750 8
MI0 C3 C 4.299 -2.250 9
MI0 C4 C 3.000 -3.000 10
MI0 C5 C 5.598 -3.000 11
MI0 C6 C 3.000 -4.500 12
MI0 C7 C 5.598 -4.500 13
MI0 C8 C 4.299 -5.250 14
MI0 C9 C 5.598 1.500 15
MI0 C10 C 6.897 2.250 16
MI0 C11 C 8.196 3.000 17
MI0 C12 C 9.495 5.250 18
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
MI0 F1 C10 SINGLE NONE 1
MI0 C1 N1 SINGLE BEGINWEDGE 2
MI0 N2 C12 SINGLE NONE 3
MI0 C9 O1 SINGLE BEGINWEDGE 4
MI0 O2 C11 DOUBLE NONE 5
MI0 C1 C9 SINGLE NONE 6
MI0 C1 C2 SINGLE NONE 7
MI0 C3 C2 SINGLE NONE 8
MI0 C3 C4 SINGLE NONE 9
MI0 C3 C5 SINGLE NONE 10
MI0 C6 C4 SINGLE NONE 11
MI0 C6 C8 SINGLE NONE 12
MI0 C7 C5 SINGLE NONE 13
MI0 C7 C8 SINGLE NONE 14
MI0 C10 F2 SINGLE NONE 15
MI0 C10 C9 SINGLE NONE 16
MI0 C10 C11 SINGLE NONE 17
MI0 C11 N2 SINGLE NONE 18
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
MI0 MurckoScaffold S1 scaffold C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
MI0 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
MI0 cyclohexane F2 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
MI0 C3 S1 1
MI0 C4 S1 1
MI0 C5 S1 1
MI0 C6 S1 1
MI0 C7 S1 1
MI0 C8 S1 1
MI0 N2 F1 1
MI0 C11 F1 1
MI0 O2 F1 1
MI0 C10 F1 1
MI0 C3 F2 1
MI0 C4 F2 1
MI0 C6 F2 1
MI0 C8 F2 1
MI0 C7 F2 1
MI0 C5 F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id MI0
_pdbe_chem_comp_rdkit_properties.exactmw 264.165
_pdbe_chem_comp_rdkit_properties.amw 264.316
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 18
_pdbe_chem_comp_rdkit_properties.NumAtoms 40
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.917
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 137.095
_pdbe_chem_comp_rdkit_properties.tpsa 75.350
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.026
_pdbe_chem_comp_rdkit_properties.CrippenMR 64.188
_pdbe_chem_comp_rdkit_properties.chi0v 8.467
_pdbe_chem_comp_rdkit_properties.chi1v 4.207
_pdbe_chem_comp_rdkit_properties.chi2v 1.614
_pdbe_chem_comp_rdkit_properties.chi3v 1.614
_pdbe_chem_comp_rdkit_properties.chi4v 0.804
_pdbe_chem_comp_rdkit_properties.chi0n 30.467
_pdbe_chem_comp_rdkit_properties.chi1n 14.957
_pdbe_chem_comp_rdkit_properties.chi2n 1.614
_pdbe_chem_comp_rdkit_properties.chi3n 1.614
_pdbe_chem_comp_rdkit_properties.chi4n 0.804
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.750
_pdbe_chem_comp_rdkit_properties.kappa1 2.957
_pdbe_chem_comp_rdkit_properties.kappa2 6.426
_pdbe_chem_comp_rdkit_properties.kappa3 3.619
_pdbe_chem_comp_rdkit_properties.Phi 1.056
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
MI0 UniChem ZINC ZINC000034163497
MI0 UniChem SureChEMBL SCHEMBL7284894
MI0 UniChem PubChem 13825247
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
MI0 F1 1.866 -1.638 -1.153 ETKDGv3 1
MI0 F2 1.927 0.601 -1.345 ETKDGv3 2
MI0 N1 0.003 -0.525 2.497 ETKDGv3 3
MI0 N2 4.618 0.710 -0.418 ETKDGv3 4
MI0 O1 2.626 -1.180 1.719 ETKDGv3 5
MI0 O2 4.476 -1.573 -0.895 ETKDGv3 6
MI0 C1 0.352 -0.608 1.074 ETKDGv3 7
MI0 C2 -0.537 0.371 0.266 ETKDGv3 8
MI0 C3 -2.060 0.196 0.505 ETKDGv3 9
MI0 C4 -2.618 -1.097 -0.162 ETKDGv3 10
MI0 C5 -2.813 1.469 0.035 ETKDGv3 11
MI0 C6 -3.293 -0.814 -1.509 ETKDGv3 12
MI0 C7 -4.295 1.181 -0.224 ETKDGv3 13
MI0 C8 -4.483 0.153 -1.357 ETKDGv3 14
MI0 C9 1.878 -0.334 0.877 ETKDGv3 15
MI0 C10 2.367 -0.473 -0.592 ETKDGv3 16
MI0 C11 3.872 -0.491 -0.659 ETKDGv3 17
MI0 C12 6.075 0.728 -0.451 ETKDGv3 18
MI0 H1 0.362 0.374 2.895 ETKDGv3 19
MI0 H2 2.453 -2.115 1.431 ETKDGv3 20
MI0 H3 0.143 -1.644 0.730 ETKDGv3 21
MI0 H4 -0.354 0.242 -0.820 ETKDGv3 22
MI0 H5 -0.241 1.409 0.539 ETKDGv3 23
MI0 H6 -2.245 0.110 1.598 ETKDGv3 24
MI0 H7 -3.371 -1.559 0.515 ETKDGv3 25
MI0 H8 -1.825 -1.856 -0.316 ETKDGv3 26
MI0 H9 -2.362 1.866 -0.902 ETKDGv3 27
MI0 H10 -2.722 2.261 0.810 ETKDGv3 28
MI0 H11 -3.647 -1.768 -1.956 ETKDGv3 29
MI0 H12 -2.543 -0.376 -2.204 ETKDGv3 30
MI0 H13 -4.817 2.126 -0.489 ETKDGv3 31
MI0 H14 -4.755 0.794 0.712 ETKDGv3 32
MI0 H15 -5.409 -0.430 -1.158 ETKDGv3 33
MI0 H16 -4.630 0.688 -2.320 ETKDGv3 34
MI0 H17 2.084 0.711 1.199 ETKDGv3 35
MI0 H18 6.477 0.033 0.315 ETKDGv3 36
MI0 H19 6.432 0.420 -1.457 ETKDGv3 37
MI0 H20 6.445 1.753 -0.236 ETKDGv3 38
MI0 H21 4.109 1.598 -0.206 ETKDGv3 39
MI0 H22 0.457 -1.312 3.015 ETKDGv3 40
#