data_MJ4
#
_chem_comp.id MJ4
_chem_comp.name (2R)-1-{[(5-methylthiophen-2-yl)methyl]amino}propan-2-ol
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H15 N O S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-04-04
_chem_comp.pdbx_modified_date 2020-04-24
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 185.286
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code MJ4
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5QQ2
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MJ4 N1 N1 N 0 1 N N N N N N -13.730 -14.537 -19.304 -1.331 -0.104 0.095 N1 MJ4 1
MJ4 C4 C1 C 0 1 N N N N N N -13.427 -14.890 -20.778 -0.341 -0.489 1.110 C4 MJ4 2
MJ4 C5 C2 C 0 1 Y N N N N N -14.076 -16.163 -21.229 1.034 -0.075 0.653 C5 MJ4 3
MJ4 C6 C3 C 0 1 Y N N N N N -14.366 -18.528 -21.844 3.339 0.206 -0.294 C6 MJ4 4
MJ4 C7 C4 C 0 1 Y N N N N N -15.498 -17.811 -22.028 2.879 1.257 0.386 C7 MJ4 5
MJ4 C8 C5 C 0 1 Y N N N N N -15.337 -16.434 -21.670 1.607 1.102 0.910 C8 MJ4 6
MJ4 C1 C6 C 0 1 N N N N N N -16.809 -14.418 -19.137 -5.099 -0.482 -0.142 C1 MJ4 7
MJ4 C2 C7 C 0 1 N N R N N N -16.007 -13.398 -19.867 -3.688 -0.077 -0.572 C2 MJ4 8
MJ4 C3 C8 C 0 1 N N N N N N -14.579 -13.249 -19.187 -2.686 -0.493 0.508 C3 MJ4 9
MJ4 O1 O1 O 0 1 N N N N N N -16.635 -12.179 -19.852 -3.633 1.339 -0.751 O1 MJ4 10
MJ4 S1 S1 S 0 1 Y N N N N N -13.132 -17.565 -21.261 2.130 -1.071 -0.295 S1 MJ4 11
MJ4 C9 C9 C 0 1 N N N N N N -14.166 -19.956 -22.065 4.689 0.125 -0.959 C9 MJ4 12
MJ4 H1 H1 H 0 1 N N N N N N -14.231 -15.295 -18.886 -1.283 0.884 -0.101 H1 MJ4 13
MJ4 H3 H3 H 0 1 N N N N N N -12.338 -14.993 -20.895 -0.576 0.007 2.053 H3 MJ4 14
MJ4 H4 H4 H 0 1 N N N N N N -13.789 -14.069 -21.415 -0.367 -1.569 1.252 H4 MJ4 15
MJ4 H5 H5 H 0 1 N N N N N N -16.420 -18.230 -22.403 3.455 2.162 0.517 H5 MJ4 16
MJ4 H6 H6 H 0 1 N N N N N N -16.123 -15.696 -21.741 1.117 1.875 1.483 H6 MJ4 17
MJ4 H7 H7 H 0 1 N N N N N N -16.285 -15.385 -19.163 -5.812 -0.186 -0.911 H7 MJ4 18
MJ4 H8 H8 H 0 1 N N N N N N -16.941 -14.101 -18.092 -5.141 -1.563 -0.004 H8 MJ4 19
MJ4 H9 H9 H 0 1 N N N N N N -17.794 -14.522 -19.616 -5.349 0.013 0.796 H9 MJ4 20
MJ4 H10 H10 H 0 1 N N N N N N -15.851 -13.740 -20.901 -3.437 -0.573 -1.510 H10 MJ4 21
MJ4 H11 H11 H 0 1 N N N N N N -14.039 -12.425 -19.677 -2.728 -1.574 0.645 H11 MJ4 22
MJ4 H12 H12 H 0 1 N N N N N N -14.718 -13.014 -18.121 -2.937 0.002 1.446 H12 MJ4 23
MJ4 H13 H13 H 0 1 N N N N N N -17.491 -12.258 -20.257 -4.243 1.674 -1.423 H13 MJ4 24
MJ4 H14 H14 H 0 1 N N N N N N -13.136 -20.229 -21.793 4.800 -0.848 -1.438 H14 MJ4 25
MJ4 H15 H15 H 0 1 N N N N N N -14.873 -20.526 -21.443 4.774 0.911 -1.709 H15 MJ4 26
MJ4 H16 H16 H 0 1 N N N N N N -14.339 -20.191 -23.126 5.471 0.252 -0.209 H16 MJ4 27
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MJ4 C9 C6 SING N N 1
MJ4 C7 C6 DOUB Y N 2
MJ4 C7 C8 SING Y N 3
MJ4 C6 S1 SING Y N 4
MJ4 C8 C5 DOUB Y N 5
MJ4 S1 C5 SING Y N 6
MJ4 C5 C4 SING N N 7
MJ4 C4 N1 SING N N 8
MJ4 C2 O1 SING N N 9
MJ4 C2 C3 SING N N 10
MJ4 C2 C1 SING N N 11
MJ4 N1 C3 SING N N 12
MJ4 N1 H1 SING N N 13
MJ4 C4 H3 SING N N 14
MJ4 C4 H4 SING N N 15
MJ4 C7 H5 SING N N 16
MJ4 C8 H6 SING N N 17
MJ4 C1 H7 SING N N 18
MJ4 C1 H8 SING N N 19
MJ4 C1 H9 SING N N 20
MJ4 C2 H10 SING N N 21
MJ4 C3 H11 SING N N 22
MJ4 C3 H12 SING N N 23
MJ4 O1 H13 SING N N 24
MJ4 C9 H14 SING N N 25
MJ4 C9 H15 SING N N 26
MJ4 C9 H16 SING N N 27
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MJ4 SMILES ACDLabs 12.01 N(CC(C)O)Cc1ccc(s1)C
MJ4 InChI InChI 1.03 InChI=1S/C9H15NOS/c1-7(11)5-10-6-9-4-3-8(2)12-9/h3-4,7,10-11H,5-6H2,1-2H3/t7-/m1/s1
MJ4 InChIKey InChI 1.03 JLVFMHMDKADIAM-SSDOTTSWSA-N
MJ4 SMILES_CANONICAL CACTVS 3.385 C[C@@H](O)CNCc1sc(C)cc1
MJ4 SMILES CACTVS 3.385 C[CH](O)CNCc1sc(C)cc1
MJ4 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 Cc1ccc(s1)CNC[C@@H](C)O
MJ4 SMILES "OpenEye OEToolkits" 2.0.6 Cc1ccc(s1)CNCC(C)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MJ4 "SYSTEMATIC NAME" ACDLabs 12.01 (2R)-1-{[(5-methylthiophen-2-yl)methyl]amino}propan-2-ol
MJ4 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 (2~{R})-1-[(5-methylthiophen-2-yl)methylamino]propan-2-ol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MJ4 'Create component' 2019-04-04 RCSB
MJ4 'Initial release' 2020-04-29 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
MJ4 N1 N 9.395 -0.293 1
MJ4 C4 C 8.280 -1.296 2
MJ4 C5 C 6.854 -0.833 3
MJ4 C6 C 4.427 -0.833 4
MJ4 C7 C 4.890 0.594 5
MJ4 C8 C 6.390 0.594 6
MJ4 C1 C 11.624 1.715 7
MJ4 C2 C 11.936 0.247 8
MJ4 C3 C 10.822 -0.756 9
MJ4 O1 O 13.363 -0.216 10
MJ4 S1 S 5.640 -1.715 11
MJ4 C9 C 3.000 -1.296 12
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
MJ4 C9 C6 SINGLE NONE 1
MJ4 C7 C6 DOUBLE NONE 2
MJ4 C7 C8 SINGLE NONE 3
MJ4 C6 S1 SINGLE NONE 4
MJ4 C8 C5 DOUBLE NONE 5
MJ4 S1 C5 SINGLE NONE 6
MJ4 C5 C4 SINGLE NONE 7
MJ4 C4 N1 SINGLE NONE 8
MJ4 C2 O1 SINGLE NONE 9
MJ4 C2 C3 SINGLE NONE 10
MJ4 C2 C1 SINGLE BEGINWEDGE 11
MJ4 N1 C3 SINGLE NONE 12
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
MJ4 MurckoScaffold S1 scaffold c1ccsc1 InChI=1S/C4H4S/c1-2-4-5-3-1/h1-4H YTPLMLYBLZKORZ-UHFFFAOYSA-N
MJ4 thiophen F1 fragment c1ccsc1 InChI=1S/C4H4S/c1-2-4-5-3-1/h1-4H YTPLMLYBLZKORZ-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
MJ4 C5 S1 1
MJ4 C6 S1 1
MJ4 C7 S1 1
MJ4 C8 S1 1
MJ4 S1 S1 1
MJ4 C5 F1 1
MJ4 C8 F1 1
MJ4 C7 F1 1
MJ4 C6 F1 1
MJ4 S1 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id MJ4
_pdbe_chem_comp_rdkit_properties.exactmw 185.087
_pdbe_chem_comp_rdkit_properties.amw 185.292
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 2
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 12
_pdbe_chem_comp_rdkit_properties.NumAtoms 27
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.556
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 98.460
_pdbe_chem_comp_rdkit_properties.tpsa 32.260
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.417
_pdbe_chem_comp_rdkit_properties.CrippenMR 51.912
_pdbe_chem_comp_rdkit_properties.chi0v 6.580
_pdbe_chem_comp_rdkit_properties.chi1v 3.626
_pdbe_chem_comp_rdkit_properties.chi2v 1.512
_pdbe_chem_comp_rdkit_properties.chi3v 1.512
_pdbe_chem_comp_rdkit_properties.chi4v 0.946
_pdbe_chem_comp_rdkit_properties.chi0n 20.764
_pdbe_chem_comp_rdkit_properties.chi1n 10.165
_pdbe_chem_comp_rdkit_properties.chi2n 0.809
_pdbe_chem_comp_rdkit_properties.chi3n 0.809
_pdbe_chem_comp_rdkit_properties.chi4n 0.447
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.380
_pdbe_chem_comp_rdkit_properties.kappa1 1.849
_pdbe_chem_comp_rdkit_properties.kappa2 4.598
_pdbe_chem_comp_rdkit_properties.kappa3 3.344
_pdbe_chem_comp_rdkit_properties.Phi 0.709
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
MJ4 UniChem PDBe MJ4
MJ4 UniChem ZINC ZINC000000360078
MJ4 UniChem PubChem 834206
MJ4 UniChem Mcule MCULE-5896109552
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
MJ4 N1 -0.734 0.346 -0.647 ETKDGv3 1
MJ4 C4 -0.148 0.240 0.694 ETKDGv3 2
MJ4 C5 1.338 0.111 0.578 ETKDGv3 3
MJ4 C6 3.772 -0.604 0.248 ETKDGv3 4
MJ4 C7 3.595 0.717 0.265 ETKDGv3 5
MJ4 C8 2.185 1.130 0.434 ETKDGv3 6
MJ4 C1 -4.547 0.275 -0.052 ETKDGv3 7
MJ4 C2 -3.107 -0.247 -0.039 ETKDGv3 8
MJ4 C3 -2.132 0.807 -0.616 ETKDGv3 9
MJ4 O1 -3.023 -1.460 -0.744 ETKDGv3 10
MJ4 S1 2.215 -1.434 0.477 ETKDGv3 11
MJ4 C9 5.096 -1.287 0.156 ETKDGv3 12
MJ4 H1 -0.679 -0.585 -1.123 ETKDGv3 13
MJ4 H3 -0.384 1.140 1.303 ETKDGv3 14
MJ4 H4 -0.540 -0.657 1.220 ETKDGv3 15
MJ4 H5 4.409 1.425 0.169 ETKDGv3 16
MJ4 H6 1.871 2.166 0.432 ETKDGv3 17
MJ4 H7 -4.870 0.508 -1.090 ETKDGv3 18
MJ4 H8 -4.628 1.195 0.566 ETKDGv3 19
MJ4 H9 -5.230 -0.493 0.370 ETKDGv3 20
MJ4 H10 -2.842 -0.444 1.021 ETKDGv3 21
MJ4 H11 -2.207 1.752 -0.033 ETKDGv3 22
MJ4 H12 -2.438 1.054 -1.656 ETKDGv3 23
MJ4 H13 -3.258 -1.273 -1.691 ETKDGv3 24
MJ4 H14 5.744 -0.769 -0.582 ETKDGv3 25
MJ4 H15 5.588 -1.275 1.150 ETKDGv3 26
MJ4 H16 4.955 -2.339 -0.168 ETKDGv3 27
#