data_MJD
#
_chem_comp.id MJD
_chem_comp.name
"(3S,3aR,5R,7aS,8S)-hexahydro-4H-3,5-methanofuro[2,3-b]pyran-8-yl {(2S,3R)-1-(3,5-difluorophenyl)-3-hydroxy-4-[(2-methylpropyl)({2-[(propan-2-yl)amino]-1,3-benzoxazol-6-yl}sulfonyl)amino]butan-2-yl}carbamate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C33 H42 F2 N4 O8 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-04-04
_chem_comp.pdbx_modified_date 2020-04-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 692.770
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code MJD
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6OGP
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MJD CAE C1 C 0 1 N N R N N N -6.380 -16.714 20.745 6.360 3.197 -1.516 CAE MJD 1
MJD CAH C2 C 0 1 N N N N N N -7.071 -15.404 20.845 6.844 1.937 -2.251 CAH MJD 2
MJD CAG C3 C 0 1 N N R N N N -8.197 -15.687 19.889 5.614 1.000 -2.102 CAG MJD 3
MJD CAJ C4 C 0 1 N N N N N N -9.078 -16.829 20.430 4.570 1.588 -3.071 CAJ MJD 4
MJD OAI O1 O 0 1 N N N N N N -8.535 -17.451 21.578 4.166 2.854 -2.580 OAI MJD 5
MJD CAA C5 C 0 1 N N R N N N -7.216 -17.856 21.248 5.161 3.834 -2.264 CAA MJD 6
MJD OAB O2 O 0 1 N N N N N N -7.208 -18.903 20.163 4.538 4.581 -1.168 OAB MJD 7
MJD CAC C6 C 0 1 N N N N N N -6.538 -18.421 19.035 4.439 3.620 -0.094 CAC MJD 8
MJD CAD C7 C 0 1 N N S N N N -6.308 -16.944 19.221 5.630 2.653 -0.250 CAD MJD 9
MJD CAF C8 C 0 1 N N S N N N -7.452 -16.072 18.644 5.120 1.259 -0.660 CAF MJD 10
MJD OAK O3 O 0 1 N N N N N N -8.283 -16.793 17.805 3.668 1.234 -0.623 OAK MJD 11
MJD CAL C9 C 0 1 N N N N N N -8.447 -16.419 16.500 3.085 0.055 -0.337 CAL MJD 12
MJD OAM O4 O 0 1 N N N N N N -8.424 -15.258 16.205 3.770 -0.927 -0.125 OAM MJD 13
MJD NAN N1 N 0 1 N N N N N N -8.697 -17.426 15.642 1.741 -0.038 -0.287 NAN MJD 14
MJD CAO C10 C 0 1 N N S N N N -8.822 -17.428 14.205 1.106 -1.321 0.024 CAO MJD 15
MJD CAW C11 C 0 1 N N N N N N -7.754 -18.446 13.717 1.029 -1.498 1.541 CAW MJD 16
MJD CBH C12 C 0 1 Y N N N N N -6.502 -18.140 14.238 2.422 -1.595 2.108 CBH MJD 17
MJD CBI C13 C 0 1 Y N N N N N -5.775 -17.055 13.749 3.037 -2.827 2.222 CBI MJD 18
MJD CBJ C14 C 0 1 Y N N N N N -4.503 -16.752 14.273 4.317 -2.918 2.742 CBJ MJD 19
MJD FBV F1 F 0 1 N N N N N N -3.778 -15.743 13.856 4.917 -4.123 2.854 FBV MJD 20
MJD CBK C15 C 0 1 Y N N N N N -3.959 -17.530 15.275 4.981 -1.773 3.147 CBK MJD 21
MJD CBL C16 C 0 1 Y N N N N N -4.654 -18.622 15.755 4.365 -0.539 3.032 CBL MJD 22
MJD FBT F2 F 0 1 N N N N N N -4.099 -19.327 16.705 5.012 0.579 3.426 FBT MJD 23
MJD CBM C17 C 0 1 Y N N N N N -5.910 -18.935 15.216 3.087 -0.450 2.507 CBM MJD 24
MJD CAT C18 C 0 1 N N R N N N -10.278 -17.743 13.686 -0.305 -1.347 -0.566 CAT MJD 25
MJD OBO O5 O 0 1 N N N N N N -10.626 -19.067 13.756 -1.110 -0.361 0.082 OBO MJD 26
MJD CAP C19 C 0 1 N N N N N N -10.421 -17.379 12.201 -0.922 -2.731 -0.350 CAP MJD 27
MJD NAQ N2 N 0 1 N N N N N N -10.375 -15.957 12.099 -2.217 -2.800 -1.033 NAQ MJD 28
MJD CBP C20 C 0 1 N N N N N N -11.645 -15.409 11.796 -2.277 -2.752 -2.496 CBP MJD 29
MJD CBQ C21 C 0 1 N N N N N N -12.412 -14.998 13.054 -2.068 -4.159 -3.061 CBQ MJD 30
MJD CBS C22 C 0 1 N N N N N N -11.758 -13.848 13.799 -3.233 -5.056 -2.637 CBS MJD 31
MJD CBR C23 C 0 1 N N N N N N -13.725 -14.518 12.501 -2.007 -4.090 -4.588 CBR MJD 32
MJD SAR S1 S 0 1 N N N N N N -9.132 -15.335 11.077 -3.612 -2.933 -0.150 SAR MJD 33
MJD OAU O6 O 0 1 N N N N N N -7.880 -16.134 11.335 -4.623 -3.348 -1.059 OAU MJD 34
MJD OAV O7 O 0 1 N N N N N N -8.961 -13.980 11.433 -3.276 -3.659 1.024 OAV MJD 35
MJD CAS C24 C 0 1 Y N N N N N -9.582 -15.589 9.513 -4.052 -1.310 0.376 CAS MJD 36
MJD CAX C25 C 0 1 Y N N N N N -10.238 -14.623 8.800 -4.760 -0.483 -0.472 CAX MJD 37
MJD CBB C26 C 0 1 Y N N N N N -9.224 -16.788 8.904 -3.690 -0.876 1.642 CBB MJD 38
MJD CBA C27 C 0 1 Y N N N N N -9.602 -17.003 7.594 -4.028 0.391 2.067 CBA MJD 39
MJD CAZ C28 C 0 1 Y N N N N N -10.245 -16.058 6.955 -4.739 1.239 1.218 CAZ MJD 40
MJD NBE N3 N 0 1 Y N N N N N -10.743 -16.035 5.749 -5.211 2.510 1.339 NBE MJD 41
MJD CAY C29 C 0 1 Y N N N N N -10.552 -14.891 7.545 -5.108 0.793 -0.060 CAY MJD 42
MJD OBC O8 O 0 1 Y N N N N N -11.225 -14.133 6.608 -5.775 1.816 -0.643 OBC MJD 43
MJD CBD C30 C 0 1 Y N N N N N -11.300 -14.853 5.570 -5.825 2.837 0.230 CBD MJD 44
MJD NBF N4 N 0 1 N N N N N N -11.853 -14.552 4.396 -6.430 4.050 -0.008 NBF MJD 45
MJD CBG C31 C 0 1 N N N N N N -12.536 -13.309 3.991 -6.414 5.092 1.022 CBG MJD 46
MJD CBU C32 C 0 1 N N N N N N -11.586 -12.137 4.021 -6.556 6.464 0.361 CBU MJD 47
MJD CBN C33 C 0 1 N N N N N N -13.804 -13.024 4.814 -7.577 4.869 1.990 CBN MJD 48
MJD H1 H1 H 0 1 N N N N N N -5.379 -16.698 21.201 7.161 3.905 -1.304 H1 MJD 49
MJD H2 H2 H 0 1 N N N N N N -6.437 -14.572 20.507 7.048 2.150 -3.301 H2 MJD 50
MJD H3 H3 H 0 1 N N N N N N -7.431 -15.200 21.864 7.721 1.512 -1.764 H3 MJD 51
MJD H4 H4 H 0 1 N N N N N N -8.803 -14.785 19.720 5.844 -0.046 -2.305 H4 MJD 52
MJD H5 H5 H 0 1 N N N N N N -10.065 -16.418 20.688 5.011 1.702 -4.061 H5 MJD 53
MJD H6 H6 H 0 1 N N N N N N -9.192 -17.587 19.641 3.707 0.924 -3.128 H6 MJD 54
MJD H7 H7 H 0 1 N N N N N N -6.727 -18.278 22.139 5.456 4.441 -3.120 H7 MJD 55
MJD H8 H8 H 0 1 N N N N N N -7.149 -18.593 18.137 4.496 4.129 0.868 H8 MJD 56
MJD H9 H9 H 0 1 N N N N N N -5.573 -18.938 18.926 3.501 3.071 -0.171 H9 MJD 57
MJD H10 H10 H 0 1 N N N N N N -5.333 -16.632 18.819 6.271 2.631 0.631 H10 MJD 58
MJD H11 H11 H 0 1 N N N N N N -7.032 -15.181 18.154 5.524 0.503 0.013 H11 MJD 59
MJD H12 H12 H 0 1 N N N N N N -8.816 -18.321 16.072 1.195 0.745 -0.456 H12 MJD 60
MJD H13 H13 H 0 1 N N N N N N -8.541 -16.437 13.818 1.695 -2.131 -0.407 H13 MJD 61
MJD H14 H14 H 0 1 N N N N N N -8.043 -19.456 14.044 0.517 -0.642 1.981 H14 MJD 62
MJD H15 H15 H 0 1 N N N N N N -7.704 -18.417 12.619 0.478 -2.409 1.774 H15 MJD 63
MJD H16 H16 H 0 1 N N N N N N -6.190 -16.442 12.963 2.518 -3.720 1.906 H16 MJD 64
MJD H17 H17 H 0 1 N N N N N N -2.990 -17.285 15.683 5.979 -1.842 3.553 H17 MJD 65
MJD H18 H18 H 0 1 N N N N N N -6.431 -19.813 15.568 2.607 0.513 2.413 H18 MJD 66
MJD H19 H19 H 0 1 N N N N N N -10.982 -17.126 14.263 -0.257 -1.133 -1.633 H19 MJD 67
MJD H20 H20 H 0 1 N N N N N N -10.560 -19.365 14.656 -1.237 -0.516 1.028 H20 MJD 68
MJD H21 H21 H 0 1 N N N N N N -11.381 -17.752 11.814 -0.256 -3.493 -0.755 H21 MJD 69
MJD H22 H22 H 0 1 N N N N N N -9.596 -17.823 11.625 -1.064 -2.903 0.717 H22 MJD 70
MJD H23 H23 H 0 1 N N N N N N -11.506 -14.522 11.160 -3.251 -2.376 -2.807 H23 MJD 71
MJD H24 H24 H 0 1 N N N N N N -12.235 -16.161 11.252 -1.495 -2.091 -2.870 H24 MJD 72
MJD H25 H25 H 0 1 N N N N N N -12.557 -15.862 13.719 -1.135 -4.570 -2.678 H25 MJD 73
MJD H26 H26 H 0 1 N N N N N N -12.355 -13.601 14.690 -4.167 -4.645 -3.021 H26 MJD 74
MJD H27 H27 H 0 1 N N N N N N -10.743 -14.141 14.107 -3.085 -6.058 -3.040 H27 MJD 75
MJD H28 H28 H 0 1 N N N N N N -11.702 -12.969 13.140 -3.277 -5.105 -1.549 H28 MJD 76
MJD H29 H29 H 0 1 N N N N N N -14.373 -14.190 13.327 -1.177 -3.451 -4.890 H29 MJD 77
MJD H30 H30 H 0 1 N N N N N N -13.548 -13.675 11.817 -1.858 -5.092 -4.991 H30 MJD 78
MJD H31 H31 H 0 1 N N N N N N -14.214 -15.338 11.954 -2.941 -3.679 -4.972 H31 MJD 79
MJD H32 H32 H 0 1 N N N N N N -10.491 -13.673 9.248 -5.042 -0.830 -1.455 H32 MJD 80
MJD H33 H33 H 0 1 N N N N N N -8.662 -17.535 9.445 -3.139 -1.533 2.299 H33 MJD 81
MJD H34 H34 H 0 1 N N N N N N -9.371 -17.937 7.103 -3.743 0.725 3.054 H34 MJD 82
MJD H35 H35 H 0 1 N N N N N N -12.533 -15.270 4.248 -6.866 4.216 -0.859 H35 MJD 83
MJD H36 H36 H 0 1 N N N N N N -12.859 -13.435 2.947 -5.472 5.048 1.568 H36 MJD 84
MJD H37 H37 H 0 1 N N N N N N -12.119 -11.224 3.716 -7.498 6.509 -0.186 H37 MJD 85
MJD H38 H38 H 0 1 N N N N N N -11.194 -12.009 5.041 -6.544 7.240 1.128 H38 MJD 86
MJD H39 H39 H 0 1 N N N N N N -10.752 -12.323 3.329 -5.728 6.623 -0.329 H39 MJD 87
MJD H40 H40 H 0 1 N N N N N N -14.473 -13.896 4.771 -7.475 3.891 2.461 H40 MJD 88
MJD H41 H41 H 0 1 N N N N N N -13.526 -12.827 5.860 -7.565 5.644 2.757 H41 MJD 89
MJD H42 H42 H 0 1 N N N N N N -14.320 -12.145 4.400 -8.519 4.913 1.444 H42 MJD 90
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MJD CBG CBU SING N N 1
MJD CBG NBF SING N N 2
MJD CBG CBN SING N N 3
MJD NBF CBD SING N N 4
MJD CBD NBE DOUB Y N 5
MJD CBD OBC SING Y N 6
MJD NBE CAZ SING Y N 7
MJD OBC CAY SING Y N 8
MJD CAZ CAY DOUB Y N 9
MJD CAZ CBA SING Y N 10
MJD CAY CAX SING Y N 11
MJD CBA CBB DOUB Y N 12
MJD CAX CAS DOUB Y N 13
MJD CBB CAS SING Y N 14
MJD CAS SAR SING N N 15
MJD SAR OAU DOUB N N 16
MJD SAR OAV DOUB N N 17
MJD SAR NAQ SING N N 18
MJD CBP NAQ SING N N 19
MJD CBP CBQ SING N N 20
MJD NAQ CAP SING N N 21
MJD CAP CAT SING N N 22
MJD CBR CBQ SING N N 23
MJD CBQ CBS SING N N 24
MJD CAT OBO SING N N 25
MJD CAT CAO SING N N 26
MJD CAW CAO SING N N 27
MJD CAW CBH SING N N 28
MJD CBI CBH DOUB Y N 29
MJD CBI CBJ SING Y N 30
MJD FBV CBJ SING N N 31
MJD CAO NAN SING N N 32
MJD CBH CBM SING Y N 33
MJD CBJ CBK DOUB Y N 34
MJD CBM CBL DOUB Y N 35
MJD CBK CBL SING Y N 36
MJD NAN CAL SING N N 37
MJD CBL FBT SING N N 38
MJD OAM CAL DOUB N N 39
MJD CAL OAK SING N N 40
MJD OAK CAF SING N N 41
MJD CAF CAD SING N N 42
MJD CAF CAG SING N N 43
MJD CAC CAD SING N N 44
MJD CAC OAB SING N N 45
MJD CAD CAE SING N N 46
MJD CAG CAJ SING N N 47
MJD CAG CAH SING N N 48
MJD OAB CAA SING N N 49
MJD CAJ OAI SING N N 50
MJD CAE CAH SING N N 51
MJD CAE CAA SING N N 52
MJD CAA OAI SING N N 53
MJD CAE H1 SING N N 54
MJD CAH H2 SING N N 55
MJD CAH H3 SING N N 56
MJD CAG H4 SING N N 57
MJD CAJ H5 SING N N 58
MJD CAJ H6 SING N N 59
MJD CAA H7 SING N N 60
MJD CAC H8 SING N N 61
MJD CAC H9 SING N N 62
MJD CAD H10 SING N N 63
MJD CAF H11 SING N N 64
MJD NAN H12 SING N N 65
MJD CAO H13 SING N N 66
MJD CAW H14 SING N N 67
MJD CAW H15 SING N N 68
MJD CBI H16 SING N N 69
MJD CBK H17 SING N N 70
MJD CBM H18 SING N N 71
MJD CAT H19 SING N N 72
MJD OBO H20 SING N N 73
MJD CAP H21 SING N N 74
MJD CAP H22 SING N N 75
MJD CBP H23 SING N N 76
MJD CBP H24 SING N N 77
MJD CBQ H25 SING N N 78
MJD CBS H26 SING N N 79
MJD CBS H27 SING N N 80
MJD CBS H28 SING N N 81
MJD CBR H29 SING N N 82
MJD CBR H30 SING N N 83
MJD CBR H31 SING N N 84
MJD CAX H32 SING N N 85
MJD CBB H33 SING N N 86
MJD CBA H34 SING N N 87
MJD NBF H35 SING N N 88
MJD CBG H36 SING N N 89
MJD CBU H37 SING N N 90
MJD CBU H38 SING N N 91
MJD CBU H39 SING N N 92
MJD CBN H40 SING N N 93
MJD CBN H41 SING N N 94
MJD CBN H42 SING N N 95
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MJD SMILES ACDLabs 12.01 C12CC3COC1OCC2C3OC(=O)NC(Cc4cc(cc(c4)F)F)C(O)CN(CC(C)C)S(=O)(=O)c5cc6c(cc5)nc(o6)NC(C)C
MJD InChI InChI 1.03 InChI=1S/C33H42F2N4O8S/c1-17(2)13-39(48(42,43)23-5-6-26-29(12-23)46-32(37-26)36-18(3)4)14-28(40)27(9-19-7-21(34)11-22(35)8-19)38-33(41)47-30-20-10-24-25(30)16-45-31(24)44-15-20/h5-8,11-12,17-18,20,24-25,27-28,30-31,40H,9-10,13-16H2,1-4H3,(H,36,37)(H,38,41)/t20-,24-,25-,27+,28-,30+,31+/m1/s1
MJD InChIKey InChI 1.03 CWXXPJPGGDAFCZ-LZEUUTFHSA-N
MJD SMILES_CANONICAL CACTVS 3.385 CC(C)CN(C[C@@H](O)[C@H](Cc1cc(F)cc(F)c1)NC(=O)O[C@H]2[C@H]3CO[C@H]4OC[C@@H]2[C@H]4C3)[S](=O)(=O)c5ccc6nc(NC(C)C)oc6c5
MJD SMILES CACTVS 3.385 CC(C)CN(C[CH](O)[CH](Cc1cc(F)cc(F)c1)NC(=O)O[CH]2[CH]3CO[CH]4OC[CH]2[CH]4C3)[S](=O)(=O)c5ccc6nc(NC(C)C)oc6c5
MJD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CC(C)CN(C[C@H]([C@H](Cc1cc(cc(c1)F)F)NC(=O)O[C@H]2[C@@H]3C[C@@H]4[C@H]2CO[C@@H]4OC3)O)S(=O)(=O)c5ccc6c(c5)oc(n6)NC(C)C
MJD SMILES "OpenEye OEToolkits" 2.0.7 CC(C)CN(CC(C(Cc1cc(cc(c1)F)F)NC(=O)OC2C3CC4C2COC4OC3)O)S(=O)(=O)c5ccc6c(c5)oc(n6)NC(C)C
#
_pdbx_chem_comp_identifier.comp_id MJD
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program ACDLabs
_pdbx_chem_comp_identifier.program_version 12.01
_pdbx_chem_comp_identifier.identifier
"(3S,3aR,5R,7aS,8S)-hexahydro-4H-3,5-methanofuro[2,3-b]pyran-8-yl {(2S,3R)-1-(3,5-difluorophenyl)-3-hydroxy-4-[(2-methylpropyl)({2-[(propan-2-yl)amino]-1,3-benzoxazol-6-yl}sulfonyl)amino]butan-2-yl}carbamate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MJD 'Create component' 2019-04-04 RCSB
MJD 'Initial release' 2020-04-08 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
MJD CAE C 2.322 -4.385 1
MJD CAH C 1.523 -4.904 2
MJD CAG C 0.526 -4.731 3
MJD CAJ C 0.417 -6.108 4
MJD OAI O 2.309 -6.592 5
MJD CAA C 3.238 -5.026 6
MJD OAB O 4.387 -3.993 7
MJD CAC C 3.642 -2.637 8
MJD CAD C 2.210 -3.051 9
MJD CAF C 0.639 -3.115 10
MJD OAK O -1.925 -2.039 11
MJD CAL C -2.473 -0.430 12
MJD OAM O -1.487 0.620 13
MJD NAN N -4.134 0.069 14
MJD CAO C -4.400 1.703 15
MJD CAW C -5.828 2.484 16
MJD CBH C -7.164 1.819 17
MJD CBI C -8.452 2.591 18
MJD CBJ C -9.767 1.868 19
MJD FBV F -11.054 2.635 20
MJD CBK C -9.790 0.368 21
MJD CBL C -8.507 -0.408 22
MJD FBT F -8.528 -1.907 23
MJD CBM C -7.196 0.321 24
MJD CAT C -3.209 2.517 25
MJD OBO O -3.296 4.018 26
MJD CAP C -1.911 1.829 27
MJD NAQ N -0.657 2.580 28
MJD CBP C -0.671 4.078 29
MJD CBQ C 0.620 4.834 30
MJD CBS C 1.921 4.090 31
MJD CBR C 0.612 6.333 32
MJD SAR S 0.627 1.835 33
MJD OAU O 1.381 3.130 34
MJD OAV O -0.131 0.539 35
MJD CAS C 1.913 1.080 36
MJD CAX C 3.208 1.833 37
MJD CBB C 1.908 -0.419 38
MJD CBA C 3.209 -1.172 39
MJD CAZ C 4.506 -0.421 40
MJD NBE N 5.936 -0.887 41
MJD CAY C 4.510 1.079 42
MJD OBC O 5.936 1.543 43
MJD CBD C 6.816 0.327 44
MJD NBF N 8.317 0.326 45
MJD CBG C 9.067 -0.974 46
MJD CBU C 10.567 -0.975 47
MJD CBN C 8.316 -2.272 48
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
MJD CBG CBU SINGLE NONE 1
MJD CBG NBF SINGLE NONE 2
MJD CBG CBN SINGLE NONE 3
MJD NBF CBD SINGLE NONE 4
MJD CBD NBE DOUBLE NONE 5
MJD CBD OBC SINGLE NONE 6
MJD NBE CAZ SINGLE NONE 7
MJD OBC CAY SINGLE NONE 8
MJD CAZ CAY SINGLE NONE 9
MJD CAZ CBA DOUBLE NONE 10
MJD CAY CAX DOUBLE NONE 11
MJD CBA CBB SINGLE NONE 12
MJD CAX CAS SINGLE NONE 13
MJD CBB CAS DOUBLE NONE 14
MJD CAS SAR SINGLE NONE 15
MJD SAR OAU DOUBLE NONE 16
MJD SAR OAV DOUBLE NONE 17
MJD SAR NAQ SINGLE NONE 18
MJD CBP NAQ SINGLE NONE 19
MJD CBP CBQ SINGLE NONE 20
MJD NAQ CAP SINGLE NONE 21
MJD CAP CAT SINGLE NONE 22
MJD CBR CBQ SINGLE NONE 23
MJD CBQ CBS SINGLE NONE 24
MJD CAT OBO SINGLE BEGINDASH 25
MJD CAT CAO SINGLE NONE 26
MJD CAO CAW SINGLE BEGINWEDGE 27
MJD CAW CBH SINGLE NONE 28
MJD CBI CBH DOUBLE NONE 29
MJD CBI CBJ SINGLE NONE 30
MJD FBV CBJ SINGLE NONE 31
MJD CAO NAN SINGLE NONE 32
MJD CBH CBM SINGLE NONE 33
MJD CBJ CBK DOUBLE NONE 34
MJD CBM CBL DOUBLE NONE 35
MJD CBK CBL SINGLE NONE 36
MJD NAN CAL SINGLE NONE 37
MJD CBL FBT SINGLE NONE 38
MJD OAM CAL DOUBLE NONE 39
MJD CAL OAK SINGLE NONE 40
MJD CAF OAK SINGLE BEGINDASH 41
MJD CAF CAD SINGLE NONE 42
MJD CAF CAG SINGLE NONE 43
MJD CAC CAD SINGLE NONE 44
MJD CAC OAB SINGLE NONE 45
MJD CAD CAE SINGLE NONE 46
MJD CAG CAJ SINGLE NONE 47
MJD CAG CAH SINGLE NONE 48
MJD OAB CAA SINGLE NONE 49
MJD CAJ OAI SINGLE NONE 50
MJD CAE CAH SINGLE NONE 51
MJD CAE CAA SINGLE NONE 52
MJD CAA OAI SINGLE NONE 53
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
MJD MurckoScaffold S1 scaffold 'O=C(N[C@H](CCNS(=O)(=O)c1ccc2ncoc2c1)Cc1ccccc1)O[C@H]1[C@H]2CO[C@H]3OC[C@@H]1[C@H]3C2' InChI=1S/C26H29N3O7S/c30-26(36-24-17-11-20-21(24)14-34-25(20)33-13-17)29-18(10-16-4-2-1-3-5-16)8-9-28-37(31,32)19-6-7-22-23(12-19)35-15-27-22/h1-7,12,15,17-18,20-21,24-25,28H,8-11,13-14H2,(H,29,30)/t17-,18-,20-,21-,24+,25+/m1/s1 OIVCUKFQWZQUBV-COZKWSFWSA-N
MJD benzoxazole F1 fragment c1ccc2ocnc2c1 InChI=1S/C7H5NO/c1-2-4-7-6(3-1)8-5-9-7/h1-5H BCMCBBGGLRIHSE-UHFFFAOYSA-N
MJD cyclopentane F2 fragment C1CCCC1 InChI=1S/C5H10/c1-2-4-5-3-1/h1-5H2 RGSFGYAAUTVSQA-UHFFFAOYSA-N
MJD furanose F3 fragment OC1CCCO1 InChI=1S/C4H8O2/c5-4-2-1-3-6-4/h4-5H,1-3H2 JNODDICFTDYODH-UHFFFAOYSA-N
MJD oxazole F4 fragment c1cocn1 InChI=1S/C3H3NO/c1-2-5-3-4-1/h1-3H ZCQWOFVYLHDMMC-UHFFFAOYSA-N
MJD phenyl F5 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
MJD pyranose F6 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
MJD CAE S1 1
MJD CAH S1 1
MJD CAG S1 1
MJD CAJ S1 1
MJD OAI S1 1
MJD CAA S1 1
MJD OAB S1 1
MJD CAC S1 1
MJD CAD S1 1
MJD CAF S1 1
MJD OAK S1 1
MJD CAL S1 1
MJD OAM S1 1
MJD NAN S1 1
MJD CAO S1 1
MJD CAW S1 1
MJD CBH S1 1
MJD CBI S1 1
MJD CBJ S1 1
MJD CBK S1 1
MJD CBL S1 1
MJD CBM S1 1
MJD CAT S1 1
MJD CAP S1 1
MJD NAQ S1 1
MJD SAR S1 1
MJD OAU S1 1
MJD OAV S1 1
MJD CAS S1 1
MJD CAX S1 1
MJD CBB S1 1
MJD CBA S1 1
MJD CAZ S1 1
MJD NBE S1 1
MJD CAY S1 1
MJD OBC S1 1
MJD CBD S1 1
MJD CAY F1 1
MJD OBC F1 1
MJD CBD F1 1
MJD NBE F1 1
MJD CAZ F1 1
MJD CBA F1 1
MJD CBB F1 1
MJD CAS F1 1
MJD CAX F1 1
MJD CAE F2 1
MJD CAD F2 1
MJD CAF F2 1
MJD CAG F2 1
MJD CAH F2 1
MJD CAD F3 1
MJD CAC F3 1
MJD OAB F3 1
MJD CAA F3 1
MJD CAE F3 1
MJD OAI F3 1
MJD CAY F4 1
MJD CAZ F4 1
MJD NBE F4 1
MJD CBD F4 1
MJD OBC F4 1
MJD CBH F5 1
MJD CBI F5 1
MJD CBJ F5 1
MJD CBK F5 1
MJD CBL F5 1
MJD CBM F5 1
MJD CAS F5 2
MJD CAX F5 2
MJD CAY F5 2
MJD CAZ F5 2
MJD CBA F5 2
MJD CBB F5 2
MJD CAG F6 1
MJD CAJ F6 1
MJD OAI F6 1
MJD CAA F6 1
MJD CAE F6 1
MJD CAH F6 1
MJD OAB F6 1
#
_pdbe_chem_comp_rdkit_properties.comp_id MJD
_pdbe_chem_comp_rdkit_properties.exactmw 692.269
_pdbe_chem_comp_rdkit_properties.amw 692.782
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 12
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 18
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 10
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 48
_pdbe_chem_comp_rdkit_properties.NumAtoms 90
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 15
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.576
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 3
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 2
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 7
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 336.925
_pdbe_chem_comp_rdkit_properties.tpsa 152.460
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.307
_pdbe_chem_comp_rdkit_properties.CrippenMR 167.679
_pdbe_chem_comp_rdkit_properties.chi0v 23.536
_pdbe_chem_comp_rdkit_properties.chi1v 13.618
_pdbe_chem_comp_rdkit_properties.chi2v 6.833
_pdbe_chem_comp_rdkit_properties.chi3v 6.833
_pdbe_chem_comp_rdkit_properties.chi4v 4.638
_pdbe_chem_comp_rdkit_properties.chi0n 64.719
_pdbe_chem_comp_rdkit_properties.chi1n 32.981
_pdbe_chem_comp_rdkit_properties.chi2n 5.449
_pdbe_chem_comp_rdkit_properties.chi3n 5.449
_pdbe_chem_comp_rdkit_properties.chi4n 3.639
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.370
_pdbe_chem_comp_rdkit_properties.kappa1 10.119
_pdbe_chem_comp_rdkit_properties.kappa2 13.862
_pdbe_chem_comp_rdkit_properties.kappa3 7.443
_pdbe_chem_comp_rdkit_properties.Phi 2.922
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
MJD UniChem PDBe MJD
MJD UniChem PubChem 146018257
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
MJD CAE -8.138 -0.701 1.272 ETKDGv3 1
MJD CAH -8.870 0.628 1.162 ETKDGv3 2
MJD CAG -7.934 1.359 0.221 ETKDGv3 3
MJD CAJ -8.046 0.684 -1.185 ETKDGv3 4
MJD OAI -8.647 -0.609 -1.147 ETKDGv3 5
MJD CAA -8.123 -1.419 -0.098 ETKDGv3 6
MJD OAB -6.807 -1.814 -0.422 ETKDGv3 7
MJD CAC -5.982 -1.430 0.649 ETKDGv3 8
MJD CAD -6.684 -0.344 1.452 ETKDGv3 9
MJD CAF -6.572 1.098 0.886 ETKDGv3 10
MJD OAK -5.484 1.303 -0.018 ETKDGv3 11
MJD CAL -4.150 1.392 0.393 ETKDGv3 12
MJD OAM -3.849 1.280 1.613 ETKDGv3 13
MJD NAN -3.131 1.592 -0.593 ETKDGv3 14
MJD CAO -1.701 1.410 -0.318 ETKDGv3 15
MJD CAW -1.135 0.323 -1.264 ETKDGv3 16
MJD CBH -1.935 -0.955 -1.191 ETKDGv3 17
MJD CBI -1.707 -1.857 -0.219 ETKDGv3 18
MJD CBJ -2.513 -3.093 -0.144 ETKDGv3 19
MJD FBV -2.274 -3.996 0.839 ETKDGv3 20
MJD CBK -3.479 -3.320 -1.043 ETKDGv3 21
MJD CBL -3.745 -2.331 -2.107 ETKDGv3 22
MJD FBT -4.735 -2.555 -3.005 ETKDGv3 23
MJD CBM -3.017 -1.209 -2.177 ETKDGv3 24
MJD CAT -0.990 2.785 -0.447 ETKDGv3 25
MJD OBO -0.820 3.139 -1.794 ETKDGv3 26
MJD CAP 0.330 2.912 0.358 ETKDGv3 27
MJD NAQ 1.287 1.802 0.138 ETKDGv3 28
MJD CBP 2.200 1.633 1.298 ETKDGv3 29
MJD CBQ 2.294 0.143 1.689 ETKDGv3 30
MJD CBS 3.564 -0.128 2.504 ETKDGv3 31
MJD CBR 1.055 -0.291 2.482 ETKDGv3 32
MJD SAR 2.236 2.043 -1.324 ETKDGv3 33
MJD OAU 1.373 1.948 -2.549 ETKDGv3 34
MJD OAV 2.887 3.399 -1.300 ETKDGv3 35
MJD CAS 3.481 0.803 -1.457 ETKDGv3 36
MJD CAX 4.881 1.100 -1.030 ETKDGv3 37
MJD CBB 3.158 -0.438 -1.905 ETKDGv3 38
MJD CBA 4.189 -1.512 -1.968 ETKDGv3 39
MJD CAZ 5.421 -1.199 -1.568 ETKDGv3 40
MJD NBE 6.574 -2.023 -1.509 ETKDGv3 41
MJD CAY 5.762 0.104 -1.100 ETKDGv3 42
MJD OBC 7.097 0.078 -0.762 ETKDGv3 43
MJD CBD 7.506 -1.240 -1.037 ETKDGv3 44
MJD NBF 8.844 -1.699 -0.821 ETKDGv3 45
MJD CBG 9.877 -0.823 -0.264 ETKDGv3 46
MJD CBU 11.269 -1.402 -0.536 ETKDGv3 47
MJD CBN 9.658 -0.642 1.241 ETKDGv3 48
MJD H1 -8.526 -1.348 2.090 ETKDGv3 49
MJD H2 -8.925 1.134 2.152 ETKDGv3 50
MJD H3 -9.900 0.519 0.753 ETKDGv3 51
MJD H4 -8.159 2.447 0.169 ETKDGv3 52
MJD H5 -7.070 0.626 -1.711 ETKDGv3 53
MJD H6 -8.692 1.329 -1.817 ETKDGv3 54
MJD H7 -8.753 -2.331 -0.025 ETKDGv3 55
MJD H8 -4.992 -1.114 0.272 ETKDGv3 56
MJD H9 -5.814 -2.317 1.299 ETKDGv3 57
MJD H10 -6.379 -0.373 2.522 ETKDGv3 58
MJD H11 -6.470 1.811 1.737 ETKDGv3 59
MJD H12 -3.428 1.840 -1.564 ETKDGv3 60
MJD H13 -1.567 1.052 0.725 ETKDGv3 61
MJD H14 -0.084 0.090 -1.008 ETKDGv3 62
MJD H15 -1.140 0.689 -2.313 ETKDGv3 63
MJD H16 -0.930 -1.692 0.516 ETKDGv3 64
MJD H17 -4.073 -4.223 -0.988 ETKDGv3 65
MJD H18 -3.223 -0.484 -2.954 ETKDGv3 66
MJD H19 -1.682 3.534 0.011 ETKDGv3 67
MJD H20 -0.636 4.114 -1.819 ETKDGv3 68
MJD H21 0.809 3.895 0.158 ETKDGv3 69
MJD H22 0.011 2.936 1.424 ETKDGv3 70
MJD H23 1.877 2.208 2.194 ETKDGv3 71
MJD H24 3.213 2.036 1.078 ETKDGv3 72
MJD H25 2.345 -0.477 0.770 ETKDGv3 73
MJD H26 3.620 -1.203 2.781 ETKDGv3 74
MJD H27 4.465 0.117 1.901 ETKDGv3 75
MJD H28 3.574 0.484 3.431 ETKDGv3 76
MJD H29 0.135 -0.070 1.906 ETKDGv3 77
MJD H30 1.001 0.245 3.453 ETKDGv3 78
MJD H31 1.089 -1.384 2.676 ETKDGv3 79
MJD H32 5.173 2.075 -0.662 ETKDGv3 80
MJD H33 2.143 -0.668 -2.201 ETKDGv3 81
MJD H34 3.945 -2.507 -2.315 ETKDGv3 82
MJD H35 9.083 -2.678 -1.100 ETKDGv3 83
MJD H36 9.821 0.172 -0.760 ETKDGv3 84
MJD H37 11.419 -1.525 -1.630 ETKDGv3 85
MJD H38 12.053 -0.716 -0.151 ETKDGv3 86
MJD H39 11.384 -2.393 -0.046 ETKDGv3 87
MJD H40 9.696 -1.625 1.759 ETKDGv3 88
MJD H41 8.669 -0.177 1.433 ETKDGv3 89
MJD H42 10.441 0.022 1.666 ETKDGv3 90
#