data_MJR
#
_chem_comp.id MJR
_chem_comp.name 2-(3-chlorophenyl)-N-(3-methyl-1H-pyrazol-4-yl)acetamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C12 H12 Cl N3 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2023-08-16
_chem_comp.pdbx_modified_date 2023-11-03
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 249.696
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code MJR
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7GDK
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MJR N1 N1 N 0 1 Y N N N N N 7.098 0.386 17.033 -4.140 -1.459 -1.270 N1 MJR 1
MJR C4 C1 C 0 1 N N N N N N 9.085 -0.060 20.968 -0.775 0.554 0.230 C4 MJR 2
MJR C5 C2 C 0 1 N N N N N N 9.494 -0.831 22.207 0.320 1.356 0.885 C5 MJR 3
MJR C6 C3 C 0 1 Y N N N N N 10.964 -0.630 22.484 1.638 1.039 0.226 C6 MJR 4
MJR C7 C4 C 0 1 Y N N N N N 11.386 0.278 23.444 2.062 1.779 -0.861 C7 MJR 5
MJR C8 C5 C 0 1 Y N N N N N 12.725 0.612 23.563 3.271 1.488 -1.466 C8 MJR 6
MJR C10 C6 C 0 1 Y N N N N N 13.249 -0.910 21.817 3.631 -0.283 0.105 C10 MJR 7
MJR CL CL1 CL 0 0 N N N N N N 14.434 -1.731 20.841 4.616 -1.578 0.712 CL MJR 8
MJR C9 C7 C 0 1 Y N N N N N 13.667 0.032 22.728 4.056 0.458 -0.983 C9 MJR 9
MJR C11 C8 C 0 1 Y N N N N N 11.918 -1.253 21.684 2.424 0.011 0.713 C11 MJR 10
MJR O O1 O 0 1 N N N N N N 9.798 0.809 20.470 -0.512 -0.201 -0.681 O MJR 11
MJR N2 N2 N 0 1 N N N N N N 7.874 -0.417 20.446 -2.047 0.676 0.658 N2 MJR 12
MJR C3 C9 C 0 1 Y N N N N N 7.379 0.110 19.237 -3.070 -0.074 0.047 C3 MJR 13
MJR C1 C10 C 0 1 Y N N N N N 6.370 1.026 19.056 -4.431 -0.047 0.388 C1 MJR 14
MJR C C11 C 0 1 N N N N N N 5.569 1.825 20.033 -5.051 0.792 1.475 C MJR 15
MJR C2 C12 C 0 1 Y N N N N N 7.804 -0.252 17.958 -2.915 -0.951 -0.977 C2 MJR 16
MJR N N3 N 0 1 Y N N N N N 6.217 1.164 17.728 -5.068 -0.875 -0.400 N MJR 17
MJR H1 H1 H 0 1 N N N N N N 7.191 0.313 16.040 -4.338 -2.109 -1.963 H1 MJR 18
MJR H2 H2 H 0 1 N N N N N N 8.910 -0.473 23.067 0.106 2.420 0.776 H2 MJR 19
MJR H3 H3 H 0 1 N N N N N N 9.297 -1.902 22.050 0.373 1.103 1.944 H3 MJR 20
MJR H4 H4 H 0 1 N N N N N N 10.662 0.730 24.106 1.449 2.584 -1.239 H4 MJR 21
MJR H5 H5 H 0 1 N N N N N N 13.036 1.327 24.310 3.603 2.066 -2.316 H5 MJR 22
MJR H6 H6 H 0 1 N N N N N N 14.708 0.314 22.791 4.998 0.228 -1.458 H6 MJR 23
MJR H7 H7 H 0 1 N N N N N N 11.619 -2.000 20.964 2.092 -0.567 1.563 H7 MJR 24
MJR H8 H8 H 0 1 N N N N N N 7.315 -1.081 20.943 -2.258 1.280 1.387 H8 MJR 25
MJR H9 H9 H 0 1 N N N N N N 4.886 2.493 19.488 -5.355 1.754 1.062 H9 MJR 26
MJR H10 H10 H 0 1 N N N N N N 4.985 1.145 20.671 -5.924 0.278 1.877 H10 MJR 27
MJR H11 H11 H 0 1 N N N N N N 6.246 2.424 20.659 -4.324 0.951 2.271 H11 MJR 28
MJR H12 H12 H 0 1 N N N N N N 8.598 -0.954 17.750 -1.987 -1.200 -1.470 H12 MJR 29
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MJR N1 N SING Y N 1
MJR N1 C2 SING Y N 2
MJR N C1 DOUB Y N 3
MJR C2 C3 DOUB Y N 4
MJR C1 C3 SING Y N 5
MJR C1 C SING N N 6
MJR C3 N2 SING N N 7
MJR N2 C4 SING N N 8
MJR O C4 DOUB N N 9
MJR CL C10 SING N N 10
MJR C4 C5 SING N N 11
MJR C11 C10 DOUB Y N 12
MJR C11 C6 SING Y N 13
MJR C10 C9 SING Y N 14
MJR C5 C6 SING N N 15
MJR C6 C7 DOUB Y N 16
MJR C9 C8 DOUB Y N 17
MJR C7 C8 SING Y N 18
MJR N1 H1 SING N N 19
MJR C5 H2 SING N N 20
MJR C5 H3 SING N N 21
MJR C7 H4 SING N N 22
MJR C8 H5 SING N N 23
MJR C9 H6 SING N N 24
MJR C11 H7 SING N N 25
MJR N2 H8 SING N N 26
MJR C H9 SING N N 27
MJR C H10 SING N N 28
MJR C H11 SING N N 29
MJR C2 H12 SING N N 30
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MJR SMILES ACDLabs 12.01 O=C(Nc1c[NH]nc1C)Cc1cccc(Cl)c1
MJR InChI InChI 1.06 InChI=1S/C12H12ClN3O/c1-8-11(7-14-16-8)15-12(17)6-9-3-2-4-10(13)5-9/h2-5,7H,6H2,1H3,(H,14,16)(H,15,17)
MJR InChIKey InChI 1.06 YSMRCXUJRFLNNU-UHFFFAOYSA-N
MJR SMILES_CANONICAL CACTVS 3.385 Cc1n[nH]cc1NC(=O)Cc2cccc(Cl)c2
MJR SMILES CACTVS 3.385 Cc1n[nH]cc1NC(=O)Cc2cccc(Cl)c2
MJR SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 Cc1c(c[nH]n1)NC(=O)Cc2cccc(c2)Cl
MJR SMILES "OpenEye OEToolkits" 2.0.7 Cc1c(c[nH]n1)NC(=O)Cc2cccc(c2)Cl
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MJR "SYSTEMATIC NAME" ACDLabs 12.01 2-(3-chlorophenyl)-N-(3-methyl-1H-pyrazol-4-yl)acetamide
MJR "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 2-(3-chlorophenyl)-~{N}-(3-methyl-1~{H}-pyrazol-4-yl)ethanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MJR 'Create component' 2023-08-16 RCSB
MJR 'Initial release' 2023-11-08 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
MJR N1 N 9.820 4.652 1
MJR C4 C 6.897 0.598 2
MJR C5 C 5.598 -0.152 3
MJR C6 C 5.598 -1.652 4
MJR C7 C 6.897 -2.402 5
MJR C8 C 6.897 -3.902 6
MJR C10 C 4.299 -3.902 7
MJR CL Cl 3.000 -4.652 8
MJR C9 C 5.598 -4.652 9
MJR C11 C 4.299 -2.402 10
MJR O O 8.196 -0.152 11
MJR N2 N 6.897 2.098 12
MJR C3 C 8.196 2.848 13
MJR C1 C 9.566 2.238 14
MJR C C 9.878 0.771 15
MJR C2 C 8.353 4.340 16
MJR N N 10.570 3.353 17
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
MJR N1 N SINGLE NONE 1
MJR N1 C2 SINGLE NONE 2
MJR N C1 DOUBLE NONE 3
MJR C2 C3 DOUBLE NONE 4
MJR C1 C3 SINGLE NONE 5
MJR C1 C SINGLE NONE 6
MJR C3 N2 SINGLE NONE 7
MJR N2 C4 SINGLE NONE 8
MJR O C4 DOUBLE NONE 9
MJR CL C10 SINGLE NONE 10
MJR C4 C5 SINGLE NONE 11
MJR C11 C10 DOUBLE NONE 12
MJR C11 C6 SINGLE NONE 13
MJR C10 C9 SINGLE NONE 14
MJR C5 C6 SINGLE NONE 15
MJR C6 C7 DOUBLE NONE 16
MJR C9 C8 DOUBLE NONE 17
MJR C7 C8 SINGLE NONE 18
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
MJR MurckoScaffold S1 scaffold 'O=C(Cc1ccccc1)Nc1cn[nH]c1' InChI=1S/C11H11N3O/c15-11(14-10-7-12-13-8-10)6-9-4-2-1-3-5-9/h1-5,7-8H,6H2,(H,12,13)(H,14,15) VMSKWYPGBFAQCH-UHFFFAOYSA-N
MJR amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
MJR phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
MJR pyrazole F3 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
MJR N1 S1 1
MJR C4 S1 1
MJR C5 S1 1
MJR C6 S1 1
MJR C7 S1 1
MJR C8 S1 1
MJR C10 S1 1
MJR C9 S1 1
MJR C11 S1 1
MJR O S1 1
MJR N2 S1 1
MJR C3 S1 1
MJR C1 S1 1
MJR C2 S1 1
MJR N S1 1
MJR N2 F1 1
MJR C4 F1 1
MJR O F1 1
MJR C5 F1 1
MJR C6 F2 1
MJR C11 F2 1
MJR C10 F2 1
MJR C9 F2 1
MJR C8 F2 1
MJR C7 F2 1
MJR C1 F3 1
MJR C3 F3 1
MJR C2 F3 1
MJR N1 F3 1
MJR N F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id MJR
_pdbe_chem_comp_rdkit_properties.exactmw 249.067
_pdbe_chem_comp_rdkit_properties.amw 249.701
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 17
_pdbe_chem_comp_rdkit_properties.NumAtoms 29
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 5
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.167
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 120.971
_pdbe_chem_comp_rdkit_properties.tpsa 57.780
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.063
_pdbe_chem_comp_rdkit_properties.CrippenMR 65.754
_pdbe_chem_comp_rdkit_properties.chi0v 8.884
_pdbe_chem_comp_rdkit_properties.chi1v 4.615
_pdbe_chem_comp_rdkit_properties.chi2v 1.759
_pdbe_chem_comp_rdkit_properties.chi3v 1.759
_pdbe_chem_comp_rdkit_properties.chi4v 1.062
_pdbe_chem_comp_rdkit_properties.chi0n 20.128
_pdbe_chem_comp_rdkit_properties.chi1n 10.132
_pdbe_chem_comp_rdkit_properties.chi2n 1.570
_pdbe_chem_comp_rdkit_properties.chi3n 1.570
_pdbe_chem_comp_rdkit_properties.chi4n 0.920
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.810
_pdbe_chem_comp_rdkit_properties.kappa1 3.849
_pdbe_chem_comp_rdkit_properties.kappa2 5.014
_pdbe_chem_comp_rdkit_properties.kappa3 3.074
_pdbe_chem_comp_rdkit_properties.Phi 1.135
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
MJR UniChem PDBe MJR
MJR UniChem PubChem 154858274
MJR UniChem BindingDb 496643
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
MJR N1 -3.642 1.266 1.397 ETKDGv3 1
MJR C4 -0.330 0.628 -1.515 ETKDGv3 2
MJR C5 0.960 0.144 -2.104 ETKDGv3 3
MJR C6 2.033 0.136 -1.051 ETKDGv3 4
MJR C7 2.272 -0.967 -0.319 ETKDGv3 5
MJR C8 3.302 -0.948 0.740 ETKDGv3 6
MJR C10 3.724 1.394 0.198 ETKDGv3 7
MJR CL 4.623 2.862 0.535 ETKDGv3 8
MJR C9 3.992 0.172 0.986 ETKDGv3 9
MJR C11 2.794 1.379 -0.766 ETKDGv3 10
MJR O -0.690 1.819 -1.713 ETKDGv3 11
MJR N2 -1.137 -0.264 -0.731 ETKDGv3 12
MJR C3 -2.255 0.144 0.074 ETKDGv3 13
MJR C1 -3.273 -0.740 0.643 ETKDGv3 14
MJR C -3.369 -2.217 0.448 ETKDGv3 15
MJR C2 -2.498 1.354 0.559 ETKDGv3 16
MJR N -4.062 -0.068 1.416 ETKDGv3 17
MJR H1 -4.071 2.036 1.955 ETKDGv3 18
MJR H2 0.817 -0.873 -2.530 ETKDGv3 19
MJR H3 1.264 0.806 -2.944 ETKDGv3 20
MJR H4 1.713 -1.878 -0.492 ETKDGv3 21
MJR H5 3.495 -1.842 1.319 ETKDGv3 22
MJR H6 4.745 0.184 1.764 ETKDGv3 23
MJR H7 2.593 2.275 -1.340 ETKDGv3 24
MJR H8 -0.914 -1.284 -0.766 ETKDGv3 25
MJR H9 -4.356 -2.589 0.796 ETKDGv3 26
MJR H10 -2.566 -2.719 1.026 ETKDGv3 27
MJR H11 -3.254 -2.461 -0.628 ETKDGv3 28
MJR H12 -1.910 2.249 0.417 ETKDGv3 29
#