data_MM9
#
_chem_comp.id MM9
_chem_comp.name
(2S)-N-[(4-carbamimidoylphenyl)methyl]-1-[(2R)-2-cyclohexyl-2-[[2-(dimethylamino)-2-oxidanylidene-ethyl]amino]ethanoyl]azetidine-2-carboxamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H36 N6 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-09-14
_chem_comp.pdbx_modified_date 2014-09-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 456.581
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code MM9
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4BAM
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MM9 C1 C1 C 0 1 N N N N N N 18.758 -14.410 24.235 -3.766 1.729 0.007 C1 MM9 1
MM9 C2 C2 C 0 1 N N N N N N 18.885 -15.767 24.961 -3.119 2.819 0.865 C2 MM9 2
MM9 C3 C3 C 0 1 N N N N N N 19.473 -15.588 26.370 -3.669 4.186 0.452 C3 MM9 3
MM9 C4 C4 C 0 1 N N N N N N 20.828 -14.860 26.312 -3.348 4.440 -1.022 C4 MM9 4
MM9 C5 C5 C 0 1 N N N N N N 20.684 -13.490 25.623 -3.994 3.351 -1.880 C5 MM9 5
MM9 C6 C6 C 0 1 N N N N N N 20.128 -13.697 24.201 -3.445 1.984 -1.468 C6 MM9 6
MM9 N7 N7 N 0 1 N N N N N N 16.934 -15.390 22.820 -3.934 -0.694 -0.307 N7 MM9 7
MM9 C8 C8 C 0 1 N N R N N N 18.200 -14.613 22.803 -3.216 0.362 0.419 C8 MM9 8
MM9 C9 C9 C 0 1 N N N N N N 17.912 -13.274 22.167 -1.748 0.290 0.088 C9 MM9 9
MM9 O0 O0 O 0 1 N N N N N N 16.869 -12.692 22.449 -1.386 -0.192 -0.964 O0 MM9 10
MM9 N11 N11 N 0 1 N N N N N N 18.737 -12.698 21.270 -0.836 0.761 0.962 N11 MM9 11
MM9 C12 C12 C 0 1 N N S N N N 18.555 -11.507 20.435 0.624 0.935 0.978 C12 MM9 12
MM9 C13 C13 C 0 1 N N N N N N 17.181 -11.654 19.801 1.370 -0.191 0.310 C13 MM9 13
MM9 O14 O14 O 0 1 N N N N N N 16.879 -12.696 19.243 0.759 -1.120 -0.174 O14 MM9 14
MM9 N15 N15 N 0 1 N N N N N N 16.259 -10.694 19.995 2.716 -0.166 0.250 N15 MM9 15
MM9 C16 C16 C 0 1 N N N N N N 14.902 -10.841 19.462 3.441 -1.260 -0.400 C16 MM9 16
MM9 C17 C17 C 0 1 Y N N N N N 13.944 -10.823 20.624 4.922 -0.992 -0.333 C17 MM9 17
MM9 C18 C18 C 0 1 Y N N N N N 13.334 -9.623 20.972 5.657 -1.452 0.745 C18 MM9 18
MM9 C19 C19 C 0 1 Y N N N N N 12.445 -9.574 22.026 7.014 -1.209 0.813 C19 MM9 19
MM9 C20 C20 C 0 1 Y N N N N N 12.215 -10.734 22.787 7.644 -0.498 -0.208 C20 MM9 20
MM9 C21 C21 C 0 1 Y N N N N N 12.842 -11.945 22.437 6.898 -0.037 -1.292 C21 MM9 21
MM9 C22 C22 C 0 1 Y N N N N N 13.701 -11.978 21.344 5.543 -0.291 -1.351 C22 MM9 22
MM9 C23 C23 C 0 1 N N N N N N 11.227 -10.689 23.895 9.099 -0.233 -0.141 C23 MM9 23
MM9 N24 N24 N 0 1 N N N N N N 10.934 -9.560 24.477 9.794 -0.665 0.873 N24 MM9 24
MM9 N25 N25 N 0 1 N N N N N N 10.536 -11.834 24.276 9.719 0.470 -1.151 N25 MM9 25
MM9 C26 C26 C 0 1 N N N N N N 19.744 -11.895 19.547 0.568 0.808 2.507 C26 MM9 26
MM9 C27 C27 C 0 1 N N N N N N 19.983 -13.031 20.550 -0.864 1.333 2.317 C27 MM9 27
MM9 C28 C28 C 0 1 N N N N N N 16.340 -15.677 21.482 -5.221 -0.993 0.335 C28 MM9 28
MM9 C10 C10 C 0 1 N N N N N N 14.610 -15.520 19.060 -7.694 -3.759 -0.609 C10 MM9 29
MM9 C29 C29 C 0 1 N N N N N N 14.820 -15.691 21.543 -5.868 -2.165 -0.357 C29 MM9 30
MM9 O30 O30 O 0 1 N N N N N N 14.273 -15.766 22.639 -5.312 -2.698 -1.293 O30 MM9 31
MM9 C30 C30 C 0 1 N N N N N N 12.563 -15.596 20.527 -7.737 -1.975 1.195 C30 MM9 32
MM9 N2 N2 N 0 1 N N N N N N 14.038 -15.608 20.416 -7.065 -2.620 0.064 N2 MM9 33
MM9 H22 H22 H 0 1 N N N N N N 18.697 -10.552 20.963 0.948 1.917 0.635 H22 MM9 34
MM9 H1 H1 H 0 1 N N N N N N 18.052 -13.780 24.796 -4.846 1.745 0.152 H1 MM9 35
MM9 H21C H21C H 0 0 N N N N N N 17.888 -16.225 25.043 -3.348 2.637 1.915 H21C MM9 36
MM9 H22C H22C H 0 0 N N N N N N 19.545 -16.426 24.378 -2.039 2.802 0.720 H22C MM9 37
MM9 H61C H61C H 0 0 N N N N N N 20.837 -14.309 23.624 -2.365 1.967 -1.612 H61C MM9 38
MM9 H62C H62C H 0 0 N N N N N N 20.010 -12.717 23.716 -3.905 1.207 -2.079 H62C MM9 39
MM9 H8 H8 H 0 1 N N N N N N 18.952 -15.146 22.203 -3.354 0.224 1.492 H8 MM9 40
MM9 H31C H31C H 0 0 N N N N N N 18.773 -14.998 26.980 -4.749 4.202 0.597 H31C MM9 41
MM9 H32C H32C H 0 0 N N N N N N 19.615 -16.577 26.829 -3.208 4.962 1.063 H32C MM9 42
MM9 H41C H41C H 0 0 N N N N N N 21.202 -14.711 27.336 -3.740 5.414 -1.316 H41C MM9 43
MM9 H42C H42C H 0 0 N N N N N N 21.544 -15.475 25.746 -2.268 4.424 -1.167 H42C MM9 44
MM9 H51C H51C H 0 0 N N N N N N 19.993 -12.858 26.200 -5.075 3.367 -1.735 H51C MM9 45
MM9 H52C H52C H 0 0 N N N N N N 21.668 -13.001 25.566 -3.766 3.532 -2.931 H52C MM9 46
MM9 H7 H7 H 0 1 N N N N N N 17.115 -16.264 23.271 -4.063 -0.443 -1.276 H7 MM9 47
MM9 H281 H281 H 0 0 N N N N N N 16.663 -14.901 20.773 -5.056 -1.237 1.385 H281 MM9 48
MM9 H282 H282 H 0 0 N N N N N N 16.694 -16.660 21.136 -5.874 -0.123 0.264 H282 MM9 49
MM9 H271 H271 H 0 0 N N N N N N 20.893 -12.906 21.155 -0.933 2.421 2.327 H271 MM9 50
MM9 H272 H272 H 0 0 N N N N N N 19.980 -14.033 20.096 -1.593 0.858 2.973 H272 MM9 51
MM9 H261 H261 H 0 0 N N N N N N 19.478 -12.221 18.531 0.627 -0.217 2.873 H261 MM9 52
MM9 H262 H262 H 0 0 N N N N N N 20.548 -11.146 19.493 1.227 1.496 3.037 H262 MM9 53
MM9 H15 H15 H 0 1 N N N N N N 16.502 -9.871 20.509 3.205 0.577 0.637 H15 MM9 54
MM9 H161 H161 H 0 0 N N N N N N 14.677 -10.009 18.779 3.218 -2.197 0.110 H161 MM9 55
MM9 H162 H162 H 0 0 N N N N N N 14.814 -11.794 18.920 3.132 -1.332 -1.443 H162 MM9 56
MM9 H18 H18 H 0 1 N N N N N N 13.557 -8.725 20.415 5.168 -2.003 1.535 H18 MM9 57
MM9 HA HA H 0 1 N N N N N N 14.177 -12.904 21.058 4.964 0.062 -2.192 HA MM9 58
MM9 H19 H19 H 0 1 N N N N N N 11.931 -8.654 22.264 7.587 -1.568 1.655 H19 MM9 59
MM9 H21 H21 H 0 1 N N N N N N 12.657 -12.840 23.012 7.380 0.515 -2.086 H21 MM9 60
MM9 H24 H24 H 0 1 N N N N N N 10.211 -9.667 25.160 10.747 -0.491 0.917 H24 MM9 61
MM9 H251 H251 H 0 0 N N N N N N 9.831 -11.780 24.983 9.202 0.791 -1.906 H251 MM9 62
MM9 H252 H252 H 0 0 N N N N N N 10.744 -12.711 23.843 10.672 0.643 -1.107 H252 MM9 63
MM9 H101 H101 H 0 0 N N N N N N 13.797 -15.463 18.321 -7.377 -4.685 -0.129 H101 MM9 64
MM9 H102 H102 H 0 0 N N N N N N 15.237 -14.620 18.984 -8.778 -3.667 -0.543 H102 MM9 65
MM9 H103 H103 H 0 0 N N N N N N 15.223 -16.412 18.862 -7.394 -3.772 -1.657 H103 MM9 66
MM9 H301 H301 H 0 0 N N N N N N 12.274 -15.667 21.586 -8.685 -2.477 1.388 H301 MM9 67
MM9 H302 H302 H 0 0 N N N N N N 12.171 -14.660 20.102 -7.103 -2.042 2.080 H302 MM9 68
MM9 H303 H303 H 0 0 N N N N N N 12.147 -16.452 19.975 -7.922 -0.927 0.959 H303 MM9 69
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MM9 C1 C2 SING N N 1
MM9 C1 C6 SING N N 2
MM9 C1 C8 SING N N 3
MM9 C2 C3 SING N N 4
MM9 C3 C4 SING N N 5
MM9 C4 C5 SING N N 6
MM9 C5 C6 SING N N 7
MM9 N7 C8 SING N N 8
MM9 N7 C28 SING N N 9
MM9 C8 C9 SING N N 10
MM9 C9 O0 DOUB N N 11
MM9 C9 N11 SING N N 12
MM9 N11 C12 SING N N 13
MM9 N11 C27 SING N N 14
MM9 C12 C13 SING N N 15
MM9 C12 C26 SING N N 16
MM9 C13 O14 DOUB N N 17
MM9 C13 N15 SING N N 18
MM9 N15 C16 SING N N 19
MM9 C16 C17 SING N N 20
MM9 C17 C18 SING Y N 21
MM9 C17 C22 DOUB Y N 22
MM9 C18 C19 DOUB Y N 23
MM9 C19 C20 SING Y N 24
MM9 C20 C21 DOUB Y N 25
MM9 C20 C23 SING N N 26
MM9 C21 C22 SING Y N 27
MM9 C23 N24 DOUB N N 28
MM9 C23 N25 SING N N 29
MM9 C26 C27 SING N N 30
MM9 C28 C29 SING N N 31
MM9 C10 N2 SING N N 32
MM9 C29 O30 DOUB N N 33
MM9 C29 N2 SING N N 34
MM9 C30 N2 SING N N 35
MM9 C12 H22 SING N N 36
MM9 C1 H1 SING N N 37
MM9 C2 H21C SING N N 38
MM9 C2 H22C SING N N 39
MM9 C6 H61C SING N N 40
MM9 C6 H62C SING N N 41
MM9 C8 H8 SING N N 42
MM9 C3 H31C SING N N 43
MM9 C3 H32C SING N N 44
MM9 C4 H41C SING N N 45
MM9 C4 H42C SING N N 46
MM9 C5 H51C SING N N 47
MM9 C5 H52C SING N N 48
MM9 N7 H7 SING N N 49
MM9 C28 H281 SING N N 50
MM9 C28 H282 SING N N 51
MM9 C27 H271 SING N N 52
MM9 C27 H272 SING N N 53
MM9 C26 H261 SING N N 54
MM9 C26 H262 SING N N 55
MM9 N15 H15 SING N N 56
MM9 C16 H161 SING N N 57
MM9 C16 H162 SING N N 58
MM9 C18 H18 SING N N 59
MM9 C22 HA SING N N 60
MM9 C19 H19 SING N N 61
MM9 C21 H21 SING N N 62
MM9 N24 H24 SING N N 63
MM9 N25 H251 SING N N 64
MM9 N25 H252 SING N N 65
MM9 C10 H101 SING N N 66
MM9 C10 H102 SING N N 67
MM9 C10 H103 SING N N 68
MM9 C30 H301 SING N N 69
MM9 C30 H302 SING N N 70
MM9 C30 H303 SING N N 71
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MM9 SMILES ACDLabs 12.01 O=C(NCc1ccc(C(=[N@H])N)cc1)C3N(C(=O)C(NCC(=O)N(C)C)C2CCCCC2)CC3
MM9 InChI InChI 1.03 InChI=1S/C24H36N6O3/c1-29(2)20(31)15-27-21(17-6-4-3-5-7-17)24(33)30-13-12-19(30)23(32)28-14-16-8-10-18(11-9-16)22(25)26/h8-11,17,19,21,27H,3-7,12-15H2,1-2H3,(H3,25,26)(H,28,32)/t19-,21+/m0/s1
MM9 InChIKey InChI 1.03 UBUHFANKPRTXGI-PZJWPPBQSA-N
MM9 SMILES_CANONICAL CACTVS 3.385 CN(C)C(=O)CN[C@H](C1CCCCC1)C(=O)N2CC[C@H]2C(=O)NCc3ccc(cc3)C(N)=N
MM9 SMILES CACTVS 3.385 CN(C)C(=O)CN[CH](C1CCCCC1)C(=O)N2CC[CH]2C(=O)NCc3ccc(cc3)C(N)=N
MM9 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "[H]/N=C(/c1ccc(cc1)CNC(=O)[C@@H]2CCN2C(=O)[C@@H](C3CCCCC3)NCC(=O)N(C)C)\N"
MM9 SMILES "OpenEye OEToolkits" 1.9.2 CN(C)C(=O)CNC(C1CCCCC1)C(=O)N2CCC2C(=O)NCc3ccc(cc3)C(=N)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MM9 "SYSTEMATIC NAME" ACDLabs 12.01 (2S)-N-(4-carbamimidoylbenzyl)-1-[(2R)-2-cyclohexyl-2-{[2-(dimethylamino)-2-oxoethyl]amino}acetyl]azetidine-2-carboxamide
MM9 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 (2S)-N-[(4-carbamimidoylphenyl)methyl]-1-[(2R)-2-cyclohexyl-2-[[2-(dimethylamino)-2-oxidanylidene-ethyl]amino]ethanoyl]azetidine-2-carboxamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MM9 'Create component' 2012-09-14 EBI
MM9 'Initial release' 2013-01-11 RCSB
MM9 'Modify descriptor' 2014-09-05 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
MM9 C1 C 7.500 -1.249 1
MM9 C2 C 8.250 0.050 2
MM9 C3 C 7.500 1.349 3
MM9 C4 C 6.000 1.349 4
MM9 C5 C 5.250 0.050 5
MM9 C6 C 6.000 -1.249 6
MM9 N7 N 7.500 -3.847 7
MM9 C8 C 8.250 -2.548 8
MM9 C9 C 9.750 -2.548 9
MM9 O0 O 10.500 -1.249 10
MM9 N11 N 10.500 -3.847 11
MM9 C12 C 11.949 -4.235 12
MM9 C13 C 13.248 -3.485 13
MM9 O14 O 14.547 -4.235 14
MM9 N15 N 13.248 -1.985 15
MM9 C16 C 14.547 -1.235 16
MM9 C17 C 14.547 0.265 17
MM9 C18 C 15.846 1.015 18
MM9 C19 C 15.846 2.515 19
MM9 C20 C 14.547 3.265 20
MM9 C21 C 13.248 2.515 21
MM9 C22 C 13.248 1.015 22
MM9 C23 C 14.547 4.765 23
MM9 N24 N 15.846 5.515 24
MM9 N25 N 13.248 5.515 25
MM9 C26 C 11.561 -5.684 26
MM9 C27 C 10.112 -5.296 27
MM9 C28 C 6.000 -3.847 28
MM9 C10 C 3.000 -6.445 29
MM9 C29 C 5.250 -5.146 30
MM9 O30 O 6.000 -6.445 31
MM9 C30 C 3.000 -3.847 32
MM9 N2 N 3.750 -5.146 33
MM9 H24 H 17.145 4.765 34
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
MM9 C1 C2 SINGLE NONE 1
MM9 C1 C6 SINGLE NONE 2
MM9 C1 C8 SINGLE NONE 3
MM9 C2 C3 SINGLE NONE 4
MM9 C3 C4 SINGLE NONE 5
MM9 C4 C5 SINGLE NONE 6
MM9 C5 C6 SINGLE NONE 7
MM9 C8 N7 SINGLE BEGINDASH 8
MM9 N7 C28 SINGLE NONE 9
MM9 C8 C9 SINGLE NONE 10
MM9 C9 O0 DOUBLE NONE 11
MM9 C9 N11 SINGLE NONE 12
MM9 N11 C12 SINGLE NONE 13
MM9 N11 C27 SINGLE NONE 14
MM9 C12 C13 SINGLE BEGINDASH 15
MM9 C12 C26 SINGLE NONE 16
MM9 C13 O14 DOUBLE NONE 17
MM9 C13 N15 SINGLE NONE 18
MM9 N15 C16 SINGLE NONE 19
MM9 C16 C17 SINGLE NONE 20
MM9 C17 C18 DOUBLE NONE 21
MM9 C17 C22 SINGLE NONE 22
MM9 C18 C19 SINGLE NONE 23
MM9 C19 C20 DOUBLE NONE 24
MM9 C20 C21 SINGLE NONE 25
MM9 C20 C23 SINGLE ENDUPRIGHT 26
MM9 C21 C22 DOUBLE NONE 27
MM9 C23 N24 DOUBLE NONE 28
MM9 C23 N25 SINGLE ENDUPRIGHT 29
MM9 C26 C27 SINGLE NONE 30
MM9 C28 C29 SINGLE NONE 31
MM9 C10 N2 SINGLE NONE 32
MM9 C29 O30 DOUBLE NONE 33
MM9 C29 N2 SINGLE NONE 34
MM9 C30 N2 SINGLE NONE 35
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
MM9 MurckoScaffold S1 scaffold 'O=C(NCc1ccccc1)[C@@H]1CCN1C(=O)CC1CCCCC1' InChI=1S/C19H26N2O2/c22-18(13-15-7-3-1-4-8-15)21-12-11-17(21)19(23)20-14-16-9-5-2-6-10-16/h2,5-6,9-10,15,17H,1,3-4,7-8,11-14H2,(H,20,23)/t17-/m0/s1 ZTNVZESMYYEUTP-KRWDZBQOSA-N
MM9 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
MM9 cyclohexane F2 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
MM9 peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
MM9 phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
MM9 Z2856434901 F5 fragment CNCCC1CCCCC1 InChI=1S/C9H19N/c1-10-8-7-9-5-3-2-4-6-9/h9-10H,2-8H2,1H3 KCYFTGSOYOWCJF-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
MM9 C1 S1 1
MM9 C2 S1 1
MM9 C3 S1 1
MM9 C4 S1 1
MM9 C5 S1 1
MM9 C6 S1 1
MM9 C8 S1 1
MM9 C9 S1 1
MM9 O0 S1 1
MM9 N11 S1 1
MM9 C12 S1 1
MM9 C13 S1 1
MM9 O14 S1 1
MM9 N15 S1 1
MM9 C16 S1 1
MM9 C17 S1 1
MM9 C18 S1 1
MM9 C19 S1 1
MM9 C20 S1 1
MM9 C21 S1 1
MM9 C22 S1 1
MM9 C26 S1 1
MM9 C27 S1 1
MM9 N11 F1 1
MM9 C9 F1 1
MM9 O0 F1 1
MM9 C8 F1 1
MM9 N15 F1 2
MM9 C13 F1 2
MM9 O14 F1 2
MM9 C12 F1 2
MM9 N2 F1 3
MM9 C29 F1 3
MM9 O30 F1 3
MM9 C28 F1 3
MM9 C1 F2 1
MM9 C2 F2 1
MM9 C3 F2 1
MM9 C4 F2 1
MM9 C5 F2 1
MM9 C6 F2 1
MM9 O0 F3 1
MM9 C9 F3 1
MM9 C8 F3 1
MM9 N7 F3 1
MM9 O14 F3 2
MM9 C13 F3 2
MM9 C12 F3 2
MM9 N11 F3 2
MM9 O30 F3 3
MM9 C29 F3 3
MM9 C28 F3 3
MM9 N7 F3 3
MM9 C17 F4 1
MM9 C18 F4 1
MM9 C19 F4 1
MM9 C20 F4 1
MM9 C21 F4 1
MM9 C22 F4 1
MM9 C12 F5 1
MM9 N11 F5 1
MM9 C9 F5 1
MM9 C8 F5 1
MM9 C1 F5 1
MM9 C2 F5 1
MM9 C3 F5 1
MM9 C4 F5 1
MM9 C5 F5 1
MM9 C6 F5 1
MM9 C27 F5 2
MM9 N11 F5 2
MM9 C9 F5 2
MM9 C8 F5 2
MM9 C1 F5 2
MM9 C2 F5 2
MM9 C3 F5 2
MM9 C4 F5 2
MM9 C5 F5 2
MM9 C6 F5 2
#
_pdbe_chem_comp_rdkit_properties.comp_id MM9
_pdbe_chem_comp_rdkit_properties.exactmw 456.285
_pdbe_chem_comp_rdkit_properties.amw 456.591
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 33
_pdbe_chem_comp_rdkit_properties.NumAtoms 69
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.583
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 245.987
_pdbe_chem_comp_rdkit_properties.tpsa 131.620
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.705
_pdbe_chem_comp_rdkit_properties.CrippenMR 125.951
_pdbe_chem_comp_rdkit_properties.chi0v 15.908
_pdbe_chem_comp_rdkit_properties.chi1v 8.296
_pdbe_chem_comp_rdkit_properties.chi2v 3.439
_pdbe_chem_comp_rdkit_properties.chi3v 3.439
_pdbe_chem_comp_rdkit_properties.chi4v 1.948
_pdbe_chem_comp_rdkit_properties.chi0n 51.908
_pdbe_chem_comp_rdkit_properties.chi1n 26.032
_pdbe_chem_comp_rdkit_properties.chi2n 3.439
_pdbe_chem_comp_rdkit_properties.chi3n 3.439
_pdbe_chem_comp_rdkit_properties.chi4n 1.948
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.940
_pdbe_chem_comp_rdkit_properties.kappa1 5.480
_pdbe_chem_comp_rdkit_properties.kappa2 11.269
_pdbe_chem_comp_rdkit_properties.kappa3 6.312
_pdbe_chem_comp_rdkit_properties.Phi 1.871
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
MM9 UniChem PDBe MM9
MM9 UniChem ZINC ZINC000095920499
MM9 UniChem PubChem 70680437
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
MM9 C1 -2.519 -1.714 0.383 ETKDGv3 1
MM9 C2 -1.267 -2.462 0.923 ETKDGv3 2
MM9 C3 -1.281 -3.981 0.654 ETKDGv3 3
MM9 C4 -2.706 -4.525 0.536 ETKDGv3 4
MM9 C5 -3.468 -3.863 -0.628 ETKDGv3 5
MM9 C6 -3.037 -2.406 -0.897 ETKDGv3 6
MM9 N7 -3.435 0.470 -0.352 ETKDGv3 7
MM9 C8 -2.219 -0.211 0.133 ETKDGv3 8
MM9 C9 -1.703 0.464 1.387 ETKDGv3 9
MM9 O0 -2.343 0.363 2.469 ETKDGv3 10
MM9 N11 -0.523 1.267 1.345 ETKDGv3 11
MM9 C12 0.495 1.681 0.360 ETKDGv3 12
MM9 C13 1.306 0.510 -0.132 ETKDGv3 13
MM9 O14 1.536 0.401 -1.366 ETKDGv3 14
MM9 N15 1.826 -0.464 0.787 ETKDGv3 15
MM9 C16 2.658 -1.583 0.353 ETKDGv3 16
MM9 C17 4.032 -1.097 -0.019 ETKDGv3 17
MM9 C18 4.875 -0.651 0.927 ETKDGv3 18
MM9 C19 6.214 -0.149 0.557 ETKDGv3 19
MM9 C20 6.609 -0.131 -0.732 ETKDGv3 20
MM9 C21 5.663 -0.606 -1.776 ETKDGv3 21
MM9 C22 4.451 -1.062 -1.439 ETKDGv3 22
MM9 C23 7.957 0.369 -1.106 ETKDGv3 23
MM9 N24 8.573 1.205 -0.329 ETKDGv3 24
MM9 N25 8.590 -0.067 -2.315 ETKDGv3 25
MM9 C26 1.252 2.584 1.287 ETKDGv3 26
MM9 C27 0.203 2.161 2.266 ETKDGv3 27
MM9 C28 -3.129 1.770 -0.962 ETKDGv3 28
MM9 C10 -4.803 3.685 0.649 ETKDGv3 29
MM9 C29 -4.391 2.392 -1.495 ETKDGv3 30
MM9 O30 -4.748 2.098 -2.669 ETKDGv3 31
MM9 C30 -6.507 3.713 -1.235 ETKDGv3 32
MM9 N2 -5.225 3.255 -0.689 ETKDGv3 33
MM9 H22 0.022 2.242 -0.478 ETKDGv3 34
MM9 H1 -3.324 -1.783 1.150 ETKDGv3 35
MM9 H21C -0.347 -2.048 0.460 ETKDGv3 36
MM9 H22C -1.192 -2.290 2.019 ETKDGv3 37
MM9 H61C -3.906 -1.856 -1.318 ETKDGv3 38
MM9 H62C -2.233 -2.396 -1.666 ETKDGv3 39
MM9 H8 -1.433 -0.163 -0.654 ETKDGv3 40
MM9 H31C -0.747 -4.509 1.473 ETKDGv3 41
MM9 H32C -0.736 -4.195 -0.293 ETKDGv3 42
MM9 H41C -2.674 -5.625 0.380 ETKDGv3 43
MM9 H42C -3.245 -4.337 1.490 ETKDGv3 44
MM9 H51C -4.556 -3.890 -0.398 ETKDGv3 45
MM9 H52C -3.312 -4.456 -1.555 ETKDGv3 46
MM9 H7 -4.102 0.606 0.444 ETKDGv3 47
MM9 H281 -2.636 2.446 -0.233 ETKDGv3 48
MM9 H282 -2.423 1.629 -1.810 ETKDGv3 49
MM9 H271 0.622 1.592 3.126 ETKDGv3 50
MM9 H272 -0.444 3.006 2.590 ETKDGv3 51
MM9 H261 2.270 2.230 1.564 ETKDGv3 52
MM9 H262 1.176 3.657 1.008 ETKDGv3 53
MM9 H15 1.594 -0.388 1.802 ETKDGv3 54
MM9 H161 2.172 -2.105 -0.499 ETKDGv3 55
MM9 H162 2.745 -2.321 1.181 ETKDGv3 56
MM9 H18 4.583 -0.653 1.970 ETKDGv3 57
MM9 HA 3.771 -1.394 -2.214 ETKDGv3 58
MM9 H19 6.872 0.189 1.348 ETKDGv3 59
MM9 H21 5.931 -0.563 -2.824 ETKDGv3 60
MM9 H24 9.522 1.574 -0.559 ETKDGv3 61
MM9 H251 9.507 0.335 -2.609 ETKDGv3 62
MM9 H252 8.195 -0.847 -2.886 ETKDGv3 63
MM9 H101 -4.629 2.802 1.296 ETKDGv3 64
MM9 H102 -3.871 4.284 0.575 ETKDGv3 65
MM9 H103 -5.573 4.316 1.140 ETKDGv3 66
MM9 H301 -7.051 4.368 -0.523 ETKDGv3 67
MM9 H302 -7.151 2.837 -1.461 ETKDGv3 68
MM9 H303 -6.332 4.289 -2.169 ETKDGv3 69
#