data_MR3
#
_chem_comp.id MR3
_chem_comp.name 1-METHYL-1H-PYRROLE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C5 H7 N"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2007-02-13
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 81.116
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code MR3
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2"
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MR3 CAA CAA C 0 1 N N N N N N -16.105 24.768 -17.074 -0.231 -0.529 4.582 CAA MR3 1
MR3 NAF NAF N 0 1 Y N N N N N -15.310 24.042 -18.090 0.231 -0.213 3.249 NAF MR3 2
MR3 CAD CAD C 0 1 Y N N N N N -15.627 22.857 -18.597 1.457 0.317 2.943 CAD MR3 3
MR3 CAB CAB C 0 1 Y N N N N N -14.675 22.552 -19.471 1.520 0.473 1.576 CAB MR3 4
MR3 CAC CAC C 0 1 Y N N N N N -13.793 23.551 -19.497 0.289 0.020 1.041 CAC MR3 5
MR3 CAE CAE C 0 1 Y N N N N N -14.182 24.484 -18.631 -0.489 -0.399 2.098 CAE MR3 6
MR3 HAA1 1HAA H 0 0 N N N N N N -15.486 24.948 -16.183 0.589 -0.334 5.278 HAA1 MR3 7
MR3 HAA2 2HAA H 0 0 N N N N N N -16.439 25.731 -17.489 -1.095 0.096 4.825 HAA2 MR3 8
MR3 HAA3 3HAA H 0 0 N N N N N N -16.982 24.165 -16.795 -0.527 -1.581 4.622 HAA3 MR3 9
MR3 HAD HAD H 0 1 N N N N N N -16.490 22.258 -18.347 2.180 0.539 3.717 HAD MR3 10
MR3 HAB HAB H 0 1 N N N N N N -14.624 21.648 -20.060 2.362 0.869 1.025 HAB MR3 11
MR3 HAC HAC H 0 1 N N N N N N -12.910 23.596 -20.117 0.000 0.000 0.000 HAC MR3 12
MR3 HAE HAE H 0 1 N N N N N N -13.680 25.415 -18.412 -1.489 -0.811 2.125 HAE MR3 13
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MR3 CAA NAF SING N N 1
MR3 CAA HAA1 SING N N 2
MR3 CAA HAA2 SING N N 3
MR3 CAA HAA3 SING N N 4
MR3 NAF CAD SING Y N 5
MR3 NAF CAE SING Y N 6
MR3 CAD CAB DOUB Y N 7
MR3 CAD HAD SING N N 8
MR3 CAB CAC SING Y N 9
MR3 CAB HAB SING N N 10
MR3 CAC CAE DOUB Y N 11
MR3 CAC HAC SING N N 12
MR3 CAE HAE SING N N 13
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MR3 SMILES ACDLabs 10.04 c1cccn1C
MR3 SMILES_CANONICAL CACTVS 3.341 Cn1cccc1
MR3 SMILES CACTVS 3.341 Cn1cccc1
MR3 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 Cn1cccc1
MR3 SMILES "OpenEye OEToolkits" 1.5.0 Cn1cccc1
MR3 InChI InChI 1.03 InChI=1S/C5H7N/c1-6-4-2-3-5-6/h2-5H,1H3
MR3 InChIKey InChI 1.03 OXHNLMTVIGZXSG-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MR3 "SYSTEMATIC NAME" ACDLabs 10.04 1-methyl-1H-pyrrole
MR3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 1-methylpyrrole
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MR3 'Create component' 2007-02-13 RCSB
MR3 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
MR3 CAA C 4.213 -1.904 1
MR3 NAF N 4.213 -0.404 2
MR3 CAD C 5.427 0.478 3
MR3 CAB C 4.963 1.904 4
MR3 CAC C 3.463 1.904 5
MR3 CAE C 3.000 0.478 6
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
MR3 CAA NAF SINGLE NONE 1
MR3 NAF CAD SINGLE NONE 2
MR3 NAF CAE SINGLE NONE 3
MR3 CAD CAB DOUBLE NONE 4
MR3 CAB CAC SINGLE NONE 5
MR3 CAC CAE DOUBLE NONE 6
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
MR3 MurckoScaffold S1 scaffold 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
MR3 pyrrole F1 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
MR3 NAF S1 1
MR3 CAD S1 1
MR3 CAB S1 1
MR3 CAC S1 1
MR3 CAE S1 1
MR3 CAD F1 1
MR3 CAB F1 1
MR3 CAC F1 1
MR3 CAE F1 1
MR3 NAF F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id MR3
_pdbe_chem_comp_rdkit_properties.exactmw 81.058
_pdbe_chem_comp_rdkit_properties.amw 81.118
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 1
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 1
_pdbe_chem_comp_rdkit_properties.NumHBD 0
_pdbe_chem_comp_rdkit_properties.NumHBA 1
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 6
_pdbe_chem_comp_rdkit_properties.NumAtoms 13
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 1
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.200
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 47.050
_pdbe_chem_comp_rdkit_properties.tpsa 4.930
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.025
_pdbe_chem_comp_rdkit_properties.CrippenMR 25.413
_pdbe_chem_comp_rdkit_properties.chi0v 2.947
_pdbe_chem_comp_rdkit_properties.chi1v 1.421
_pdbe_chem_comp_rdkit_properties.chi2v 0.398
_pdbe_chem_comp_rdkit_properties.chi3v 0.398
_pdbe_chem_comp_rdkit_properties.chi4v 0.196
_pdbe_chem_comp_rdkit_properties.chi0n 9.947
_pdbe_chem_comp_rdkit_properties.chi1n 4.921
_pdbe_chem_comp_rdkit_properties.chi2n 0.398
_pdbe_chem_comp_rdkit_properties.chi3n 0.398
_pdbe_chem_comp_rdkit_properties.chi4n 0.196
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.720
_pdbe_chem_comp_rdkit_properties.kappa1 0.641
_pdbe_chem_comp_rdkit_properties.kappa2 1.168
_pdbe_chem_comp_rdkit_properties.kappa3 0.432
_pdbe_chem_comp_rdkit_properties.Phi 0.125
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
MR3 UniChem ChEMBL CHEMBL1234459
MR3 UniChem PDBe MR3
MR3 UniChem ChEBI 89012
MR3 UniChem ZINC ZINC000001692446
MR3 UniChem fdasrs NG5GPN98ZG
MR3 UniChem HMDB HMDB0033113
MR3 UniChem NMRShiftDB 10016216
MR3 UniChem Nikkaji J40.162E
MR3 UniChem 'EPA CompTox Dashboard' DTXSID3052648
MR3 UniChem ChemicalBook CB4302014
MR3 UniChem Nikkaji J2.431.884B
MR3 UniChem eMolecules 529149
MR3 UniChem SureChEMBL SCHEMBL1381
MR3 UniChem 'PubChem TPHARMA' 14842793
MR3 UniChem PubChem 7304
MR3 UniChem Mcule MCULE-4929965979
MR3 UniChem ACTor 96-54-8
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
MR3 CAA -1.866 -0.041 -0.377 ETKDGv3 1
MR3 NAF -0.501 -0.023 0.126 ETKDGv3 2
MR3 CAD 0.401 -1.122 0.112 ETKDGv3 3
MR3 CAB 1.646 -0.692 0.248 ETKDGv3 4
MR3 CAC 1.599 0.768 0.324 ETKDGv3 5
MR3 CAE 0.328 1.128 0.229 ETKDGv3 6
MR3 HAA1 -2.430 0.824 0.031 ETKDGv3 7
MR3 HAA2 -2.371 -0.978 -0.062 ETKDGv3 8
MR3 HAA3 -1.856 0.017 -1.485 ETKDGv3 9
MR3 HAD 0.108 -2.157 -0.015 ETKDGv3 10
MR3 HAB 2.532 -1.313 0.259 ETKDGv3 11
MR3 HAC 2.443 1.440 0.402 ETKDGv3 12
MR3 HAE -0.032 2.149 0.207 ETKDGv3 13
#