data_MSB
#
_chem_comp.id MSB
_chem_comp.name 1-METHYLOXY-4-SULFONE-BENZENE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C7 H8 O3 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 1999-07-08
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 172.202
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code MSB
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2"
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1BM6
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MSB S S S 0 1 N N N N N N -1.847 2.164 0.070 1.746 -1.107 4.421 S MSB 1
MSB OB1 OB1 O 0 1 N N N N N N -1.434 3.192 0.966 2.579 -2.207 4.866 OB1 MSB 2
MSB OB2 OB2 O 0 1 N N N N N N -3.203 2.171 -0.354 0.356 -0.981 4.818 OB2 MSB 3
MSB CG CG C 0 1 Y N N N N N -0.849 2.184 -1.369 1.800 -1.079 2.676 CG MSB 4
MSB CD1 CD1 C 0 1 Y N N N N N -1.451 1.984 -2.606 0.764 -0.484 1.955 CD1 MSB 5
MSB CD2 CD2 C 0 1 Y N N N N N 0.519 2.409 -1.269 2.878 -1.652 2.002 CD2 MSB 6
MSB CE1 CE1 C 0 1 Y N N N N N -0.680 2.017 -3.766 0.807 -0.463 0.561 CE1 MSB 7
MSB CE2 CE2 C 0 1 Y N N N N N 1.304 2.434 -2.428 2.921 -1.631 0.608 CE2 MSB 8
MSB CZ CZ C 0 1 Y N N N N N 0.699 2.242 -3.680 1.885 -1.036 -0.112 CZ MSB 9
MSB OH OH O 0 1 N N N N N N 1.455 2.285 -4.830 1.927 -1.016 -1.473 OH MSB 10
MSB CH CH C 0 1 N N N N N N 0.867 2.978 -5.922 0.834 -0.393 -2.146 CH MSB 11
MSB HD1 HD1 H 0 1 N N N N N N -2.516 1.800 -2.660 -0.081 -0.034 2.470 HD1 MSB 12
MSB HD2 HD2 H 0 1 N N N N N N 0.969 2.544 -0.295 3.690 -2.118 2.553 HD2 MSB 13
MSB HE1 HE1 H 0 1 N N N N N N -1.143 1.862 -4.730 -0.004 0.002 0.005 HE1 MSB 14
MSB HE2 HE2 H 0 1 N N N N N N 2.367 2.610 -2.359 3.764 -2.079 0.089 HE2 MSB 15
MSB HH1 1HH H 0 1 N N N N N N 1.639 3.297 -6.605 0.216 -1.157 -2.624 HH1 MSB 16
MSB HH2 2HH H 0 1 N N N N N N 0.179 2.321 -6.436 1.217 0.303 -2.897 HH2 MSB 17
MSB HH3 3HH H 0 1 N N N N N N 0.338 3.843 -5.557 0.233 0.156 -1.417 HH3 MSB 18
MSB HS1 HS1 H 0 1 N N N N N N -1.709 1.088 0.786 2.351 0.009 4.876 HS1 MSB 19
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MSB S OB1 DOUB N N 1
MSB S OB2 DOUB N N 2
MSB S CG SING N N 3
MSB CG CD1 DOUB Y N 4
MSB CG CD2 SING Y N 5
MSB CD1 CE1 SING Y N 6
MSB CD1 HD1 SING N N 7
MSB CD2 CE2 DOUB Y N 8
MSB CD2 HD2 SING N N 9
MSB CE1 CZ DOUB Y N 10
MSB CE1 HE1 SING N N 11
MSB CE2 CZ SING Y N 12
MSB CE2 HE2 SING N N 13
MSB CZ OH SING N N 14
MSB OH CH SING N N 15
MSB CH HH1 SING N N 16
MSB CH HH2 SING N N 17
MSB CH HH3 SING N N 18
MSB HS1 S SING N N 19
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MSB SMILES ACDLabs 10.04 "4-(dioxidosulfanyl)phenyl methyl ether"
MSB SMILES_CANONICAL CACTVS 3.341 COc1ccc(cc1)[SH](=O)=O
MSB SMILES CACTVS 3.341 COc1ccc(cc1)[SH](=O)=O
MSB SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 COc1ccc(cc1)S(=O)=O
MSB SMILES "OpenEye OEToolkits" 1.5.0 COc1ccc(cc1)S(=O)=O
MSB InChI InChI 1.03 InChI=1S/C7H8O3S/c1-10-6-2-4-7(5-3-6)11(8)9/h2-5,11H,1H3
MSB InChIKey InChI 1.03 XUNSZADDFLWFOL-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MSB "SYSTEMATIC NAME" ACDLabs 10.04 1-(dioxidosulfanyl)-4-methoxybenzene
MSB "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 1-methoxy-4-sulfino-benzene
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MSB 'Create component' 1999-07-08 RCSB
MSB 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
MSB S S 4.299 2.625 1
MSB OB1 O 4.299 4.125 2
MSB OB2 O 5.799 2.625 3
MSB CG C 4.299 1.125 4
MSB CD1 C 3.000 0.375 5
MSB CD2 C 5.598 0.375 6
MSB CE1 C 3.000 -1.125 7
MSB CE2 C 5.598 -1.125 8
MSB CZ C 4.299 -1.875 9
MSB OH O 4.299 -3.375 10
MSB CH C 3.000 -4.125 11
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
MSB S OB1 DOUBLE NONE 1
MSB S OB2 DOUBLE NONE 2
MSB S CG SINGLE NONE 3
MSB CG CD1 DOUBLE NONE 4
MSB CG CD2 SINGLE NONE 5
MSB CD1 CE1 SINGLE NONE 6
MSB CD2 CE2 DOUBLE NONE 7
MSB CE1 CZ DOUBLE NONE 8
MSB CE2 CZ SINGLE NONE 9
MSB CZ OH SINGLE NONE 10
MSB OH CH SINGLE NONE 11
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
MSB MurckoScaffold S1 scaffold c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
MSB phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
MSB CG S1 1
MSB CD1 S1 1
MSB CD2 S1 1
MSB CE1 S1 1
MSB CE2 S1 1
MSB CZ S1 1
MSB CG F1 1
MSB CD1 F1 1
MSB CE1 F1 1
MSB CZ F1 1
MSB CE2 F1 1
MSB CD2 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id MSB
_pdbe_chem_comp_rdkit_properties.exactmw 172.019
_pdbe_chem_comp_rdkit_properties.amw 172.205
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 0
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 3
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 11
_pdbe_chem_comp_rdkit_properties.NumAtoms 19
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.143
_pdbe_chem_comp_rdkit_properties.NumRings 1
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 77.488
_pdbe_chem_comp_rdkit_properties.tpsa 43.370
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.095
_pdbe_chem_comp_rdkit_properties.CrippenMR 41.535
_pdbe_chem_comp_rdkit_properties.chi0v 5.949
_pdbe_chem_comp_rdkit_properties.chi1v 3.521
_pdbe_chem_comp_rdkit_properties.chi2v 1.385
_pdbe_chem_comp_rdkit_properties.chi3v 1.385
_pdbe_chem_comp_rdkit_properties.chi4v 0.693
_pdbe_chem_comp_rdkit_properties.chi0n 13.133
_pdbe_chem_comp_rdkit_properties.chi1n 6.354
_pdbe_chem_comp_rdkit_properties.chi2n 0.848
_pdbe_chem_comp_rdkit_properties.chi3n 0.848
_pdbe_chem_comp_rdkit_properties.chi4n 0.424
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.030
_pdbe_chem_comp_rdkit_properties.kappa1 2.484
_pdbe_chem_comp_rdkit_properties.kappa2 3.387
_pdbe_chem_comp_rdkit_properties.kappa3 1.945
_pdbe_chem_comp_rdkit_properties.Phi 0.765
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
MSB UniChem PDBe MSB
MSB UniChem ZINC ZINC000150339282
MSB UniChem SureChEMBL SCHEMBL13838953
MSB UniChem 'Probes And Drugs' PD007443
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
MSB S -3.371 -0.356 0.166 ETKDGv3 1
MSB OB1 -3.777 -0.864 -1.189 ETKDGv3 2
MSB OB2 -3.688 -1.386 1.212 ETKDGv3 3
MSB CG -1.649 -0.011 0.177 ETKDGv3 4
MSB CD1 -1.205 1.228 0.430 ETKDGv3 5
MSB CD2 -0.680 -1.096 -0.095 ETKDGv3 6
MSB CE1 0.246 1.510 0.437 ETKDGv3 7
MSB CE2 0.634 -0.843 -0.089 ETKDGv3 8
MSB CZ 1.131 0.533 0.192 ETKDGv3 9
MSB OH 2.497 0.843 0.209 ETKDGv3 10
MSB CH 3.530 -0.104 -0.035 ETKDGv3 11
MSB HD1 -1.900 2.034 0.630 ETKDGv3 12
MSB HD2 -1.035 -2.098 -0.300 ETKDGv3 13
MSB HE1 0.589 2.516 0.643 ETKDGv3 14
MSB HE2 1.325 -1.650 -0.290 ETKDGv3 15
MSB HH1 3.424 -0.529 -1.056 ETKDGv3 16
MSB HH2 3.490 -0.916 0.722 ETKDGv3 17
MSB HH3 4.513 0.403 0.038 ETKDGv3 18
MSB HS1 -4.077 0.786 0.440 ETKDGv3 19
#