data_MSR
#
_chem_comp.id MSR
_chem_comp.name 4-(1H-IMIDAZOL-1-YL)PHENOL
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H8 N2 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2007-02-06
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 160.173
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code MSR
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2"
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MSR C12 C12 C 0 1 Y N N N N N 69.975 -8.777 50.639 0.807 -0.463 0.561 C12 MSR 1
MSR C13 C13 C 0 1 Y N N N N N 70.758 -8.550 49.499 0.764 -0.484 1.955 C13 MSR 2
MSR C14 C14 C 0 1 Y N N N N N 70.143 -8.248 48.277 1.800 -1.079 2.676 C14 MSR 3
MSR O17 O17 O 0 1 N N N N N N 70.906 -8.059 47.173 1.758 -1.098 4.036 O17 MSR 4
MSR C15 C15 C 0 1 Y N N N N N 68.740 -8.164 48.192 2.878 -1.652 2.002 C15 MSR 5
MSR C16 C16 C 0 1 Y N N N N N 67.953 -8.391 49.332 2.921 -1.631 0.608 C16 MSR 6
MSR C11 C11 C 0 1 Y N N N N N 68.565 -8.705 50.567 1.885 -1.036 -0.112 C11 MSR 7
MSR N3 N3 N 0 1 Y N N N N N 67.819 -9.001 51.653 1.927 -1.015 -1.495 N3 MSR 8
MSR C4 C4 C 0 1 Y N N N N N 66.482 -8.999 51.736 0.989 -0.471 -2.333 C4 MSR 9
MSR C5 C5 C 0 1 Y N N N N N 66.143 -9.373 52.964 1.468 -0.695 -3.602 C5 MSR 10
MSR NFE NFE N 0 1 Y N N N N N 67.260 -9.606 53.651 2.669 -1.359 -3.568 NFE MSR 11
MSR C2 C2 C 0 1 Y N N N N N 68.285 -9.377 52.843 2.917 -1.536 -2.290 C2 MSR 12
MSR H12 H12 H 0 1 N N N N N N 70.452 -9.009 51.580 -0.007 0.005 0.012 H12 MSR 13
MSR H13 H13 H 0 1 N N N N N N 71.835 -8.608 49.562 -0.079 -0.035 2.474 H13 MSR 14
MSR HO17 HO17 H 0 0 N N N N N N 70.348 -8.015 46.406 1.063 -0.504 4.360 HO17 MSR 15
MSR H15 H15 H 0 1 N N N N N N 68.269 -7.925 47.250 3.688 -2.117 2.558 H15 MSR 16
MSR H16 H16 H 0 1 N N N N N N 66.877 -8.326 49.265 3.767 -2.082 0.096 H16 MSR 17
MSR H4 H4 H 0 1 N N N N N N 65.798 -8.738 50.942 0.093 0.013 -1.968 H4 MSR 18
MSR H5 H5 H 0 1 N N N N N N 65.136 -9.471 53.341 1.009 -0.413 -4.539 H5 MSR 19
MSR H2 H2 H 0 1 N N N N N N 69.328 -9.479 53.106 3.789 -2.031 -1.882 H2 MSR 20
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MSR C12 C13 DOUB Y N 1
MSR C12 C11 SING Y N 2
MSR C12 H12 SING N N 3
MSR C13 C14 SING Y N 4
MSR C13 H13 SING N N 5
MSR C14 O17 SING N N 6
MSR C14 C15 DOUB Y N 7
MSR O17 HO17 SING N N 8
MSR C15 C16 SING Y N 9
MSR C15 H15 SING N N 10
MSR C16 C11 DOUB Y N 11
MSR C16 H16 SING N N 12
MSR C11 N3 SING Y N 13
MSR N3 C4 SING Y N 14
MSR N3 C2 SING Y N 15
MSR C4 C5 DOUB Y N 16
MSR C4 H4 SING N N 17
MSR C5 NFE SING Y N 18
MSR C5 H5 SING N N 19
MSR NFE C2 DOUB Y N 20
MSR C2 H2 SING N N 21
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MSR SMILES ACDLabs 10.04 n2ccn(c1ccc(O)cc1)c2
MSR SMILES_CANONICAL CACTVS 3.341 Oc1ccc(cc1)n2ccnc2
MSR SMILES CACTVS 3.341 Oc1ccc(cc1)n2ccnc2
MSR SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 c1cc(ccc1n2ccnc2)O
MSR SMILES "OpenEye OEToolkits" 1.5.0 c1cc(ccc1n2ccnc2)O
MSR InChI InChI 1.03 InChI=1S/C9H8N2O/c12-9-3-1-8(2-4-9)11-6-5-10-7-11/h1-7,12H
MSR InChIKey InChI 1.03 CYKCUAPYWQDIKR-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MSR "SYSTEMATIC NAME" ACDLabs 10.04 4-(1H-imidazol-1-yl)phenol
MSR "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 4-imidazol-1-ylphenol
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MSR 'Create component' 2007-02-06 RCSB
MSR 'Modify aromatic_flag' 2011-06-04 RCSB
MSR 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id MSR
_pdbe_chem_comp_drugbank_details.drugbank_id DB08214
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 4-(1H-IMIDAZOL-1-YL)PHENOL
_pdbe_chem_comp_drugbank_details.description ?
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id MSR
_pdbe_chem_comp_drugbank_classification.drugbank_id DB08214
_pdbe_chem_comp_drugbank_classification.parent Phenylimidazoles
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class Azoles
_pdbe_chem_comp_drugbank_classification.superclass 'Organoheterocyclic compounds'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as phenylimidazoles. These are polycyclic aromatic compounds containing a benzene ring linked to an imidazole ring through a CC or CN bond.'
#
_pdbe_chem_comp_drugbank_targets.comp_id MSR
_pdbe_chem_comp_drugbank_targets.drugbank_id DB08214
_pdbe_chem_comp_drugbank_targets.name 'Nitric oxide synthase, inducible'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P35228
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
MSR C12 C 3.000 -0.172 1
MSR C13 C 3.000 -1.672 2
MSR C14 C 4.299 -2.422 3
MSR O17 O 4.299 -3.922 4
MSR C15 C 5.598 -1.672 5
MSR C16 C 5.598 -0.172 6
MSR C11 C 4.299 0.578 7
MSR N3 N 4.299 2.078 8
MSR C4 C 5.513 2.960 9
MSR C5 C 5.049 4.387 10
MSR NFE N 3.549 4.387 11
MSR C2 C 3.086 2.960 12
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
MSR C12 C13 DOUBLE NONE 1
MSR C12 C11 SINGLE NONE 2
MSR C13 C14 SINGLE NONE 3
MSR C14 O17 SINGLE NONE 4
MSR C14 C15 DOUBLE NONE 5
MSR C15 C16 SINGLE NONE 6
MSR C16 C11 DOUBLE NONE 7
MSR C11 N3 SINGLE NONE 8
MSR N3 C4 SINGLE NONE 9
MSR N3 C2 SINGLE NONE 10
MSR C4 C5 DOUBLE NONE 11
MSR C5 NFE SINGLE NONE 12
MSR NFE C2 DOUBLE NONE 13
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
MSR MurckoScaffold S1 scaffold c1ccc(-n2ccnc2)cc1 InChI=1S/C9H8N2/c1-2-4-9(5-3-1)11-7-6-10-8-11/h1-8H SEULWJSKCVACTH-UHFFFAOYSA-N
MSR imidazole F1 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
MSR phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
MSR Z56969320 F3 fragment Oc1ccc(-n2ccnc2)cc1 InChI=1S/C9H8N2O/c12-9-3-1-8(2-4-9)11-6-5-10-7-11/h1-7,12H CYKCUAPYWQDIKR-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
MSR C12 S1 1
MSR C13 S1 1
MSR C14 S1 1
MSR C15 S1 1
MSR C16 S1 1
MSR C11 S1 1
MSR N3 S1 1
MSR C4 S1 1
MSR C5 S1 1
MSR NFE S1 1
MSR C2 S1 1
MSR C4 F1 1
MSR C5 F1 1
MSR NFE F1 1
MSR C2 F1 1
MSR N3 F1 1
MSR C12 F2 1
MSR C13 F2 1
MSR C14 F2 1
MSR C15 F2 1
MSR C16 F2 1
MSR C11 F2 1
MSR O17 F3 1
MSR C14 F3 1
MSR C13 F3 1
MSR C12 F3 1
MSR C11 F3 1
MSR C16 F3 1
MSR C15 F3 1
MSR N3 F3 1
MSR C4 F3 1
MSR C5 F3 1
MSR NFE F3 1
MSR C2 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id MSR
_pdbe_chem_comp_rdkit_properties.exactmw 160.064
_pdbe_chem_comp_rdkit_properties.amw 160.176
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 3
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 12
_pdbe_chem_comp_rdkit_properties.NumAtoms 20
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 81.248
_pdbe_chem_comp_rdkit_properties.tpsa 38.050
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.925
_pdbe_chem_comp_rdkit_properties.CrippenMR 43.958
_pdbe_chem_comp_rdkit_properties.chi0v 5.803
_pdbe_chem_comp_rdkit_properties.chi1v 3.072
_pdbe_chem_comp_rdkit_properties.chi2v 1.180
_pdbe_chem_comp_rdkit_properties.chi3v 1.180
_pdbe_chem_comp_rdkit_properties.chi4v 0.687
_pdbe_chem_comp_rdkit_properties.chi0n 13.803
_pdbe_chem_comp_rdkit_properties.chi1n 6.980
_pdbe_chem_comp_rdkit_properties.chi2n 1.180
_pdbe_chem_comp_rdkit_properties.chi3n 1.180
_pdbe_chem_comp_rdkit_properties.chi4n 0.687
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.770
_pdbe_chem_comp_rdkit_properties.kappa1 2.357
_pdbe_chem_comp_rdkit_properties.kappa2 2.695
_pdbe_chem_comp_rdkit_properties.kappa3 1.163
_pdbe_chem_comp_rdkit_properties.Phi 0.529
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
MSR UniChem ChEMBL CHEMBL275339
MSR UniChem DrugBank DB08214
MSR UniChem PDBe MSR
MSR UniChem ZINC ZINC000000066090
MSR UniChem eMolecules 486316
MSR UniChem 'PubChem TPHARMA' 14940711
MSR UniChem NMRShiftDB 76839
MSR UniChem Nikkaji J241.240C
MSR UniChem ChemicalBook CB1391497
MSR UniChem 'Probes And Drugs' PD004637
MSR UniChem 'EPA CompTox Dashboard' DTXSID90143258
MSR UniChem SureChEMBL SCHEMBL328792
MSR UniChem PubChem 82315
MSR UniChem Mcule MCULE-1410419432
MSR UniChem ACTor 10041-02-8
MSR UniChem BindingDb 105193
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
MSR C12 0.658 -1.160 0.055 ETKDGv3 1
MSR C13 1.997 -1.183 0.085 ETKDGv3 2
MSR C14 2.762 0.083 0.109 ETKDGv3 3
MSR O17 4.154 0.066 0.142 ETKDGv3 4
MSR C15 2.110 1.252 0.099 ETKDGv3 5
MSR C16 0.633 1.281 0.066 ETKDGv3 6
MSR C11 -0.075 0.134 0.046 ETKDGv3 7
MSR N3 -1.515 0.153 0.020 ETKDGv3 8
MSR C4 -2.411 -0.921 0.270 ETKDGv3 9
MSR C5 -3.648 -0.478 0.126 ETKDGv3 10
MSR NFE -3.640 0.904 -0.230 ETKDGv3 11
MSR C2 -2.391 1.239 -0.282 ETKDGv3 12
MSR H12 0.120 -2.097 0.025 ETKDGv3 13
MSR H13 2.520 -2.131 0.088 ETKDGv3 14
MSR HO17 4.667 -0.807 0.150 ETKDGv3 15
MSR H15 2.662 2.183 0.117 ETKDGv3 16
MSR H16 0.141 2.243 0.076 ETKDGv3 17
MSR H4 -2.134 -1.927 0.550 ETKDGv3 18
MSR H5 -4.544 -1.069 0.261 ETKDGv3 19
MSR H2 -2.067 2.236 -0.545 ETKDGv3 20
#