data_MY8
#
_chem_comp.id MY8
_chem_comp.name "Mycinamicin VIII"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C29 H49 N O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-11-22
_chem_comp.pdbx_modified_date 2016-07-22
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 507.702
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code MY8
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5FOI
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MY8 O1 O1 O 0 1 N N N N N N 32.603 14.447 33.840 -4.819 -1.420 -0.409 O1 MY8 1
MY8 C1 C1 C 0 1 N N R N N N 32.351 14.015 32.533 -6.053 -1.222 0.326 C1 MY8 2
MY8 C2 C2 C 0 1 N N N N N N 30.851 14.282 32.554 -7.218 -1.842 -0.451 C2 MY8 3
MY8 C3 C3 C 0 1 N N N N N N 30.536 15.770 32.454 -7.032 -3.359 -0.526 C3 MY8 4
MY8 C4 C4 C 0 1 N N S N N N 32.372 12.515 32.552 -6.319 0.274 0.521 C4 MY8 5
MY8 C5 C5 C 0 1 N N N N N N 32.196 12.243 31.084 -7.381 0.460 1.607 C5 MY8 6
MY8 C6 C6 C 0 1 N N N N N N 33.764 12.001 32.698 -5.046 0.955 0.944 C6 MY8 7
MY8 C7 C7 C 0 1 N N N N N N 34.230 11.740 33.920 -4.361 1.706 0.087 C7 MY8 8
MY8 C8 C8 C 0 1 N N N N N N 35.621 11.521 34.225 -3.088 2.308 0.507 C8 MY8 9
MY8 C9 C9 C 0 1 N N N N N N 36.065 11.376 35.483 -2.397 3.055 -0.346 C9 MY8 10
MY8 C10 C10 C 0 1 N N S N N N 37.532 11.293 35.635 -1.061 3.628 0.039 C10 MY8 11
MY8 O2 O2 O 0 1 N N N N N N 38.263 11.362 34.658 -0.871 3.561 1.451 O2 MY8 12
MY8 C11 C11 C 0 1 N N R N N N 38.085 11.655 36.930 0.037 2.817 -0.668 C11 MY8 13
MY8 C12 C12 C 0 1 N N N N N N 37.924 10.387 37.772 0.267 3.417 -2.058 C12 MY8 14
MY8 C13 C13 C 0 1 N N N N N N 37.481 12.873 37.576 -0.412 1.362 -0.786 C13 MY8 15
MY8 C14 C14 C 0 1 N N S N N N 37.683 14.113 36.685 0.695 0.498 -1.386 C14 MY8 16
MY8 C15 C15 C 0 1 N N N N N N 39.167 14.456 36.644 0.305 0.035 -2.788 C15 MY8 17
MY8 C16 C16 C 0 1 N N S N N N 37.240 15.456 37.172 1.022 -0.674 -0.467 C16 MY8 18
MY8 O3 O3 O 0 1 N N N N N N 37.735 15.450 38.534 2.354 -1.130 -0.743 O3 MY8 19
MY8 C17 C17 C 0 1 N N S N N N 38.376 16.692 38.893 3.344 -0.606 0.144 C17 MY8 20
MY8 O4 O4 O 0 1 N N N N N N 39.717 16.704 38.336 3.537 0.784 -0.125 O4 MY8 21
MY8 C18 C18 C 0 1 N N R N N N 40.414 17.901 38.728 4.493 1.416 0.728 C18 MY8 22
MY8 C19 C19 C 0 1 N N N N N N 41.518 18.297 37.814 4.595 2.900 0.369 C19 MY8 23
MY8 C20 C20 C 0 1 N N N N N N 40.745 18.014 40.176 5.859 0.751 0.542 C20 MY8 24
MY8 C21 C21 C 0 1 N N S N N N 39.391 18.010 40.823 5.735 -0.745 0.845 C21 MY8 25
MY8 N1 N1 N 0 1 N N N N N N 39.479 17.954 42.292 7.024 -1.405 0.597 N1 MY8 26
MY8 C22 C22 C 0 1 N N N N N N 40.600 17.186 42.826 7.512 -1.114 -0.758 C22 MY8 27
MY8 C23 C23 C 0 1 N N N N N N 39.429 19.260 42.948 8.017 -1.019 1.608 C23 MY8 28
MY8 C24 C24 C 0 1 N N R N N N 38.754 16.729 40.350 4.664 -1.353 -0.065 C24 MY8 29
MY8 O5 O5 O 0 1 N N N N N N 37.542 16.637 41.033 4.489 -2.733 0.259 O5 MY8 30
MY8 C25 C25 C 0 1 N N S N N N 35.759 15.322 37.274 0.055 -1.845 -0.600 C25 MY8 31
MY8 C26 C26 C 0 1 N N N N N N 35.193 16.679 37.688 0.706 -3.087 0.038 C26 MY8 32
MY8 C27 C27 C 0 1 N N N N N N 35.308 15.388 35.869 -1.224 -1.554 0.144 C27 MY8 33
MY8 C28 C28 C 0 1 N N N N N N 34.278 14.715 35.380 -2.397 -1.676 -0.472 C28 MY8 34
MY8 C29 C29 C 0 1 N N N N N N 33.932 14.826 33.941 -3.647 -1.418 0.255 C29 MY8 35
MY8 O6 O6 O 0 1 N N N N N N 34.683 15.221 33.048 -3.613 -1.221 1.454 O6 MY8 36
MY8 HA HA H 0 1 N N N N N N 32.907 14.495 31.714 -5.979 -1.703 1.302 HA MY8 37
MY8 H21C H21C H 0 0 N N N N N N 30.386 13.762 31.704 -8.155 -1.615 0.058 H21C MY8 38
MY8 H22C H22C H 0 0 N N N N N N 30.434 13.893 33.494 -7.243 -1.429 -1.459 H22C MY8 39
MY8 H4 H4 H 0 1 N N N N N N 31.625 12.044 33.208 -6.670 0.709 -0.414 H4 MY8 40
MY8 H31C H31C H 0 0 N N N N N N 29.446 15.917 32.473 -7.007 -3.772 0.482 H31C MY8 41
MY8 H32C H32C H 0 0 N N N N N N 30.992 16.299 33.304 -7.862 -3.800 -1.079 H32C MY8 42
MY8 H33C H33C H 0 0 N N N N N N 30.943 16.168 31.513 -6.095 -3.585 -1.035 H33C MY8 43
MY8 H51C H51C H 0 0 N N N N N N 32.188 11.157 30.910 -7.023 0.028 2.542 H51C MY8 44
MY8 H52C H52C H 0 0 N N N N N N 31.244 12.676 30.743 -7.573 1.524 1.749 H52C MY8 45
MY8 H53C H53C H 0 0 N N N N N N 33.027 12.698 30.525 -8.302 -0.038 1.305 H53C MY8 46
MY8 H6 H6 H 0 1 N N N N N N 34.385 11.843 31.828 -4.677 0.843 1.953 H6 MY8 47
MY8 H7 H7 H 0 1 N N N N N N 33.520 11.690 34.732 -4.745 1.873 -0.908 H7 MY8 48
MY8 H8 H8 H 0 1 N N N N N N 36.331 11.472 33.413 -2.719 2.151 1.511 H8 MY8 49
MY8 H9 H9 H 0 1 N N N N N N 35.394 11.323 36.328 -2.813 3.259 -1.325 H9 MY8 50
MY8 H10 H10 H 0 1 N N N N N N 37.579 10.204 35.779 -1.000 4.666 -0.294 H10 MY8 51
MY8 H2 H2 H 0 1 N N N N N N 39.169 11.292 34.934 -1.534 4.046 1.961 H2 MY8 52
MY8 H11 H11 H 0 1 N N N N N N 39.163 11.838 36.810 0.958 2.874 -0.092 H11 MY8 53
MY8 H121 H121 H 0 0 N N N N N N 38.319 10.565 38.783 0.579 4.456 -1.958 H121 MY8 54
MY8 H122 H122 H 0 0 N N N N N N 36.858 10.123 37.837 1.044 2.852 -2.573 H122 MY8 55
MY8 H123 H123 H 0 0 N N N N N N 38.479 9.562 37.301 -0.659 3.369 -2.632 H123 MY8 56
MY8 H131 H131 H 0 0 N N N N N N 36.404 12.707 37.726 -0.669 0.988 0.208 H131 MY8 57
MY8 H132 H132 H 0 0 N N N N N N 37.965 13.044 38.549 -1.300 1.300 -1.415 H132 MY8 58
MY8 H14 H14 H 0 1 N N N N N N 37.304 13.919 35.671 1.606 1.115 -1.477 H14 MY8 59
MY8 H151 H151 H 0 0 N N N N N N 39.322 15.341 36.010 0.147 0.905 -3.426 H151 MY8 60
MY8 H152 H152 H 0 0 N N N N N N 39.522 14.669 37.663 1.104 -0.580 -3.203 H152 MY8 61
MY8 H153 H153 H 0 0 N N N N N N 39.728 13.605 36.230 -0.614 -0.549 -2.736 H153 MY8 62
MY8 H16 H16 H 0 1 N N N N N N 37.580 16.299 36.553 0.998 -0.321 0.574 H16 MY8 63
MY8 H25 H25 H 0 1 N N N N N N 35.394 14.465 37.859 -0.174 -2.091 -1.630 H25 MY8 64
MY8 H17 H17 H 0 1 N N N N N N 37.788 17.575 38.601 3.013 -0.734 1.174 H17 MY8 65
MY8 H24 H24 H 0 1 N N N N N N 39.412 15.879 40.584 4.975 -1.258 -1.106 H24 MY8 66
MY8 H18 H18 H 0 1 N N N N N N 39.668 18.696 38.579 4.177 1.315 1.766 H18 MY8 67
MY8 H191 H191 H 0 0 N N N N N N 41.992 19.216 38.188 3.622 3.374 0.500 H191 MY8 68
MY8 H192 H192 H 0 0 N N N N N N 42.265 17.491 37.771 5.324 3.382 1.019 H192 MY8 69
MY8 H193 H193 H 0 0 N N N N N N 41.114 18.477 36.807 4.911 3.002 -0.670 H193 MY8 70
MY8 H201 H201 H 0 0 N N N N N N 41.349 17.159 40.513 6.194 0.888 -0.486 H201 MY8 71
MY8 H202 H202 H 0 0 N N N N N N 41.284 18.949 40.388 6.580 1.203 1.224 H202 MY8 72
MY8 H21 H21 H 0 1 N N N N N N 38.802 18.879 40.495 5.450 -0.883 1.888 H21 MY8 73
MY8 H221 H221 H 0 0 N N N N N N 40.571 17.209 43.925 7.642 -0.038 -0.874 H221 MY8 74
MY8 H222 H222 H 0 0 N N N N N N 40.529 16.144 42.480 8.467 -1.615 -0.915 H222 MY8 75
MY8 H223 H223 H 0 0 N N N N N N 41.545 17.625 42.475 6.788 -1.474 -1.489 H223 MY8 76
MY8 H231 H231 H 0 0 N N N N N N 39.500 19.127 44.038 7.615 -1.209 2.603 H231 MY8 77
MY8 H232 H232 H 0 0 N N N N N N 40.269 19.878 42.599 8.926 -1.604 1.467 H232 MY8 78
MY8 H233 H233 H 0 0 N N N N N N 38.480 19.758 42.701 8.247 0.041 1.506 H233 MY8 79
MY8 H5 H5 H 0 1 N N N N N N 37.703 16.654 41.969 3.820 -3.181 -0.277 H5 MY8 80
MY8 H261 H261 H 0 0 N N N N N N 34.098 16.610 37.771 0.906 -2.892 1.091 H261 MY8 81
MY8 H262 H262 H 0 0 N N N N N N 35.617 16.972 38.660 0.032 -3.938 -0.052 H262 MY8 82
MY8 H263 H263 H 0 0 N N N N N N 35.456 17.432 36.931 1.642 -3.310 -0.475 H263 MY8 83
MY8 H27 H27 H 0 1 N N N N N N 35.856 16.029 35.194 -1.186 -1.249 1.182 H27 MY8 84
MY8 H28 H28 H 0 1 N N N N N N 33.689 14.084 36.029 -2.425 -1.970 -1.511 H28 MY8 85
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MY8 O1 C1 SING N N 1
MY8 O1 C29 SING N N 2
MY8 C1 C2 SING N N 3
MY8 C1 C4 SING N N 4
MY8 C2 C3 SING N N 5
MY8 C4 C5 SING N N 6
MY8 C4 C6 SING N N 7
MY8 C6 C7 DOUB N E 8
MY8 C7 C8 SING N N 9
MY8 C8 C9 DOUB N E 10
MY8 C9 C10 SING N N 11
MY8 C10 O2 SING N N 12
MY8 C10 C11 SING N N 13
MY8 C11 C12 SING N N 14
MY8 C11 C13 SING N N 15
MY8 C13 C14 SING N N 16
MY8 C14 C15 SING N N 17
MY8 C14 C16 SING N N 18
MY8 C16 O3 SING N N 19
MY8 C16 C25 SING N N 20
MY8 O3 C17 SING N N 21
MY8 C17 O4 SING N N 22
MY8 C17 C24 SING N N 23
MY8 O4 C18 SING N N 24
MY8 C18 C19 SING N N 25
MY8 C18 C20 SING N N 26
MY8 C20 C21 SING N N 27
MY8 C21 N1 SING N N 28
MY8 C21 C24 SING N N 29
MY8 N1 C22 SING N N 30
MY8 N1 C23 SING N N 31
MY8 C24 O5 SING N N 32
MY8 C25 C26 SING N N 33
MY8 C25 C27 SING N N 34
MY8 C27 C28 DOUB N E 35
MY8 C28 C29 SING N N 36
MY8 C29 O6 DOUB N N 37
MY8 C1 HA SING N N 38
MY8 C2 H21C SING N N 39
MY8 C2 H22C SING N N 40
MY8 C4 H4 SING N N 41
MY8 C3 H31C SING N N 42
MY8 C3 H32C SING N N 43
MY8 C3 H33C SING N N 44
MY8 C5 H51C SING N N 45
MY8 C5 H52C SING N N 46
MY8 C5 H53C SING N N 47
MY8 C6 H6 SING N N 48
MY8 C7 H7 SING N N 49
MY8 C8 H8 SING N N 50
MY8 C9 H9 SING N N 51
MY8 C10 H10 SING N N 52
MY8 O2 H2 SING N N 53
MY8 C11 H11 SING N N 54
MY8 C12 H121 SING N N 55
MY8 C12 H122 SING N N 56
MY8 C12 H123 SING N N 57
MY8 C13 H131 SING N N 58
MY8 C13 H132 SING N N 59
MY8 C14 H14 SING N N 60
MY8 C15 H151 SING N N 61
MY8 C15 H152 SING N N 62
MY8 C15 H153 SING N N 63
MY8 C16 H16 SING N N 64
MY8 C25 H25 SING N N 65
MY8 C17 H17 SING N N 66
MY8 C24 H24 SING N N 67
MY8 C18 H18 SING N N 68
MY8 C19 H191 SING N N 69
MY8 C19 H192 SING N N 70
MY8 C19 H193 SING N N 71
MY8 C20 H201 SING N N 72
MY8 C20 H202 SING N N 73
MY8 C21 H21 SING N N 74
MY8 C22 H221 SING N N 75
MY8 C22 H222 SING N N 76
MY8 C22 H223 SING N N 77
MY8 C23 H231 SING N N 78
MY8 C23 H232 SING N N 79
MY8 C23 H233 SING N N 80
MY8 O5 H5 SING N N 81
MY8 C26 H261 SING N N 82
MY8 C26 H262 SING N N 83
MY8 C26 H263 SING N N 84
MY8 C27 H27 SING N N 85
MY8 C28 H28 SING N N 86
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MY8 InChI InChI 1.03 InChI=1S/C29H49NO6/c1-9-25-18(2)12-10-11-13-24(31)20(4)16-21(5)28(19(3)14-15-26(32)35-25)36-29-27(33)23(30(7)8)17-22(6)34-29/h10-15,18-25,27-29,31,33H,9,16-17H2,1-8H3/b12-10+,13-11+,15-14+/t18-,19-,20+,21-,22+,23-,24+,25+,27+,28+,29-/m0/s1
MY8 InChIKey InChI 1.03 ZWHLYXQJICTUSD-JUFBBUGVSA-N
MY8 SMILES_CANONICAL CACTVS 3.385 CC[C@H]1OC(=O)/C=C/[C@H](C)[C@@H](O[C@@H]2O[C@H](C)C[C@@H]([C@H]2O)N(C)C)[C@@H](C)C[C@@H](C)[C@H](O)/C=C/C=C/[C@@H]1C
MY8 SMILES CACTVS 3.385 CC[CH]1OC(=O)C=C[CH](C)[CH](O[CH]2O[CH](C)C[CH]([CH]2O)N(C)C)[CH](C)C[CH](C)[CH](O)C=CC=C[CH]1C
MY8 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CC[C@@H]1[C@H](/C=C/C=C/[C@H]([C@@H](C[C@@H]([C@@H]([C@H](/C=C/C(=O)O1)C)O[C@H]2[C@@H]([C@H](C[C@H](O2)C)N(C)C)O)C)C)O)C
MY8 SMILES "OpenEye OEToolkits" 1.7.6 CCC1C(C=CC=CC(C(CC(C(C(C=CC(=O)O1)C)OC2C(C(CC(O2)C)N(C)C)O)C)C)O)C
#
_pdbx_chem_comp_identifier.comp_id MY8
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 1.7.6
_pdbx_chem_comp_identifier.identifier
(3E,5S,6S,7S,9R,10S,11E,13E,15S,16R)-6-[(2S,3R,4S,6R)-4-(dimethylamino)-6-methyl-3-oxidanyl-oxan-2-yl]oxy-16-ethyl-5,7,9,15-tetramethyl-10-oxidanyl-1-oxacyclohexadeca-3,11,13-trien-2-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MY8 'Create component' 2015-11-22 EBI
MY8 'Initial release' 2016-07-27 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
MY8 O1 O 6.897 4.125 1
MY8 C1 C 6.897 5.625 2
MY8 C2 C 5.598 6.375 3
MY8 C3 C 5.598 7.875 4
MY8 C4 C 8.196 6.375 5
MY8 C5 C 8.196 7.875 6
MY8 C6 C 9.495 5.625 7
MY8 C7 C 9.495 4.125 8
MY8 C8 C 10.794 3.375 9
MY8 C9 C 10.794 1.875 10
MY8 C10 C 12.093 1.125 11
MY8 O2 O 13.392 1.875 12
MY8 C11 C 12.093 -0.375 13
MY8 C12 C 13.392 -1.125 14
MY8 C13 C 10.794 -1.125 15
MY8 C14 C 9.495 -0.375 16
MY8 C15 C 8.745 0.924 17
MY8 C16 C 8.196 -1.125 18
MY8 O3 O 8.196 -2.625 19
MY8 C17 C 6.897 -3.375 20
MY8 O4 O 5.598 -2.625 21
MY8 C18 C 4.299 -3.375 22
MY8 C19 C 3.000 -2.625 23
MY8 C20 C 4.299 -4.875 24
MY8 C21 C 5.598 -5.625 25
MY8 N1 N 5.598 -7.125 26
MY8 C22 C 4.299 -7.875 27
MY8 C23 C 6.897 -7.875 28
MY8 C24 C 6.897 -4.875 29
MY8 O5 O 8.196 -5.625 30
MY8 C25 C 6.897 -0.375 31
MY8 C26 C 5.598 -1.125 32
MY8 C27 C 6.897 1.125 33
MY8 C28 C 5.598 1.875 34
MY8 C29 C 5.598 3.375 35
MY8 O6 O 4.299 4.125 36
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
MY8 O1 C1 SINGLE NONE 1
MY8 O1 C29 SINGLE NONE 2
MY8 C1 C2 SINGLE BEGINDASH 3
MY8 C1 C4 SINGLE NONE 4
MY8 C2 C3 SINGLE NONE 5
MY8 C4 C5 SINGLE BEGINWEDGE 6
MY8 C4 C6 SINGLE ENDUPRIGHT 7
MY8 C6 C7 DOUBLE NONE 8
MY8 C7 C8 SINGLE ENDUPRIGHT 9
MY8 C8 C9 DOUBLE NONE 10
MY8 C9 C10 SINGLE ENDUPRIGHT 11
MY8 C10 O2 SINGLE BEGINWEDGE 12
MY8 C10 C11 SINGLE NONE 13
MY8 C11 C12 SINGLE BEGINDASH 14
MY8 C11 C13 SINGLE NONE 15
MY8 C13 C14 SINGLE NONE 16
MY8 C14 C15 SINGLE BEGINWEDGE 17
MY8 C14 C16 SINGLE NONE 18
MY8 C16 O3 SINGLE BEGINDASH 19
MY8 C16 C25 SINGLE NONE 20
MY8 C17 O3 SINGLE BEGINWEDGE 21
MY8 C17 O4 SINGLE NONE 22
MY8 C17 C24 SINGLE NONE 23
MY8 O4 C18 SINGLE NONE 24
MY8 C18 C19 SINGLE BEGINWEDGE 25
MY8 C18 C20 SINGLE NONE 26
MY8 C20 C21 SINGLE NONE 27
MY8 C21 N1 SINGLE BEGINWEDGE 28
MY8 C21 C24 SINGLE NONE 29
MY8 N1 C22 SINGLE NONE 30
MY8 N1 C23 SINGLE NONE 31
MY8 C24 O5 SINGLE BEGINDASH 32
MY8 C25 C26 SINGLE BEGINWEDGE 33
MY8 C25 C27 SINGLE ENDUPRIGHT 34
MY8 C27 C28 DOUBLE NONE 35
MY8 C28 C29 SINGLE ENDUPRIGHT 36
MY8 C29 O6 DOUBLE NONE 37
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
MY8 MurckoScaffold S1 scaffold 'O=C1/C=C/C[C@@H](O[C@H]2CCCCO2)CCCC/C=C/C=C/CCO1' InChI=1S/C20H30O4/c21-19-14-11-13-18(24-20-15-8-10-17-23-20)12-7-5-3-1-2-4-6-9-16-22-19/h1-2,4,6,11,14,18,20H,3,5,7-10,12-13,15-17H2/b2-1+,6-4+,14-11+/t18-,20-/m0/s1 GSXDVAVPJFYGAR-VNUDZPMJSA-N
MY8 pyranose F1 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
MY8 O1 S1 1
MY8 C1 S1 1
MY8 C4 S1 1
MY8 C6 S1 1
MY8 C7 S1 1
MY8 C8 S1 1
MY8 C9 S1 1
MY8 C10 S1 1
MY8 C11 S1 1
MY8 C13 S1 1
MY8 C14 S1 1
MY8 C16 S1 1
MY8 O3 S1 1
MY8 C17 S1 1
MY8 O4 S1 1
MY8 C18 S1 1
MY8 C20 S1 1
MY8 C21 S1 1
MY8 C24 S1 1
MY8 C25 S1 1
MY8 C27 S1 1
MY8 C28 S1 1
MY8 C29 S1 1
MY8 O6 S1 1
MY8 C20 F1 1
MY8 C18 F1 1
MY8 O4 F1 1
MY8 C17 F1 1
MY8 C24 F1 1
MY8 C21 F1 1
MY8 O3 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id MY8
_pdbe_chem_comp_rdkit_properties.exactmw 507.356
_pdbe_chem_comp_rdkit_properties.amw 507.712
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 36
_pdbe_chem_comp_rdkit_properties.NumAtoms 85
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.759
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 11
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 286.745
_pdbe_chem_comp_rdkit_properties.tpsa 88.460
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.097
_pdbe_chem_comp_rdkit_properties.CrippenMR 142.178
_pdbe_chem_comp_rdkit_properties.chi0v 17.397
_pdbe_chem_comp_rdkit_properties.chi1v 8.758
_pdbe_chem_comp_rdkit_properties.chi2v 3.428
_pdbe_chem_comp_rdkit_properties.chi3v 3.428
_pdbe_chem_comp_rdkit_properties.chi4v 1.937
_pdbe_chem_comp_rdkit_properties.chi0n 66.397
_pdbe_chem_comp_rdkit_properties.chi1n 33.074
_pdbe_chem_comp_rdkit_properties.chi2n 3.428
_pdbe_chem_comp_rdkit_properties.chi3n 3.428
_pdbe_chem_comp_rdkit_properties.chi4n 1.937
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.510
_pdbe_chem_comp_rdkit_properties.kappa1 5.419
_pdbe_chem_comp_rdkit_properties.kappa2 14.434
_pdbe_chem_comp_rdkit_properties.kappa3 8.805
_pdbe_chem_comp_rdkit_properties.Phi 2.173
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
MY8 UniChem PDBe MY8
MY8 UniChem ZINC ZINC000584905785
MY8 UniChem PubChem 137349770
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
MY8 O1 -4.170 1.333 -0.725 ETKDGv3 1
MY8 C1 -5.539 1.095 -1.071 ETKDGv3 2
MY8 C2 -6.172 2.385 -1.640 ETKDGv3 3
MY8 C3 -6.126 3.573 -0.677 ETKDGv3 4
MY8 C4 -6.282 0.516 0.167 ETKDGv3 5
MY8 C5 -7.689 0.001 -0.173 ETKDGv3 6
MY8 C6 -5.456 -0.575 0.811 ETKDGv3 7
MY8 C7 -5.080 -1.675 0.140 ETKDGv3 8
MY8 C8 -4.041 -2.622 0.596 ETKDGv3 9
MY8 C9 -3.198 -2.388 1.612 ETKDGv3 10
MY8 C10 -1.976 -3.244 1.839 ETKDGv3 11
MY8 O2 -2.363 -4.590 1.968 ETKDGv3 12
MY8 C11 -0.948 -3.106 0.678 ETKDGv3 13
MY8 C12 0.315 -3.939 0.950 ETKDGv3 14
MY8 C13 -0.618 -1.636 0.253 ETKDGv3 15
MY8 C14 0.465 -0.865 1.063 ETKDGv3 16
MY8 C15 0.082 -0.644 2.535 ETKDGv3 17
MY8 C16 0.909 0.464 0.356 ETKDGv3 18
MY8 O3 2.219 0.773 0.820 ETKDGv3 19
MY8 C17 3.194 0.631 -0.198 ETKDGv3 20
MY8 O4 3.284 -0.736 -0.569 ETKDGv3 21
MY8 C18 4.425 -1.093 -1.347 ETKDGv3 22
MY8 C19 5.220 -2.157 -0.588 ETKDGv3 23
MY8 C20 5.332 0.070 -1.848 ETKDGv3 24
MY8 C21 5.531 1.232 -0.832 ETKDGv3 25
MY8 N1 6.930 1.441 -0.363 ETKDGv3 26
MY8 C22 7.780 2.022 -1.417 ETKDGv3 27
MY8 C23 7.583 0.257 0.225 ETKDGv3 28
MY8 C24 4.539 1.148 0.341 ETKDGv3 29
MY8 O5 4.383 2.428 0.902 ETKDGv3 30
MY8 C25 -0.003 1.704 0.623 ETKDGv3 31
MY8 C26 0.607 2.988 0.033 ETKDGv3 32
MY8 C27 -1.419 1.533 0.123 ETKDGv3 33
MY8 C28 -1.724 1.434 -1.178 ETKDGv3 34
MY8 C29 -3.114 1.308 -1.644 ETKDGv3 35
MY8 O6 -3.339 1.167 -2.876 ETKDGv3 36
MY8 HA -5.576 0.326 -1.875 ETKDGv3 37
MY8 H21C -7.223 2.199 -1.944 ETKDGv3 38
MY8 H22C -5.622 2.668 -2.563 ETKDGv3 39
MY8 H4 -6.392 1.316 0.929 ETKDGv3 40
MY8 H31C -6.820 3.419 0.173 ETKDGv3 41
MY8 H32C -6.445 4.492 -1.213 ETKDGv3 42
MY8 H33C -5.095 3.732 -0.295 ETKDGv3 43
MY8 H51C -7.659 -0.717 -1.020 ETKDGv3 44
MY8 H52C -8.133 -0.507 0.710 ETKDGv3 45
MY8 H53C -8.356 0.846 -0.442 ETKDGv3 46
MY8 H6 -5.097 -0.386 1.812 ETKDGv3 47
MY8 H7 -5.488 -1.854 -0.846 ETKDGv3 48
MY8 H8 -3.879 -3.493 -0.027 ETKDGv3 49
MY8 H9 -3.305 -1.518 2.242 ETKDGv3 50
MY8 H10 -1.502 -2.921 2.788 ETKDGv3 51
MY8 H2 -2.807 -4.680 2.852 ETKDGv3 52
MY8 H11 -1.425 -3.571 -0.214 ETKDGv3 53
MY8 H121 0.058 -5.018 1.004 ETKDGv3 54
MY8 H122 1.049 -3.806 0.126 ETKDGv3 55
MY8 H123 0.787 -3.647 1.911 ETKDGv3 56
MY8 H131 -1.550 -1.045 0.211 ETKDGv3 57
MY8 H132 -0.264 -1.693 -0.800 ETKDGv3 58
MY8 H14 1.370 -1.509 1.071 ETKDGv3 59
MY8 H151 -0.962 -0.277 2.624 ETKDGv3 60
MY8 H152 0.768 0.088 3.011 ETKDGv3 61
MY8 H153 0.199 -1.582 3.111 ETKDGv3 62
MY8 H16 0.885 0.284 -0.747 ETKDGv3 63
MY8 H25 -0.061 1.877 1.718 ETKDGv3 64
MY8 H17 2.904 1.247 -1.083 ETKDGv3 65
MY8 H24 4.898 0.436 1.115 ETKDGv3 66
MY8 H18 4.042 -1.599 -2.260 ETKDGv3 67
MY8 H191 4.577 -3.046 -0.415 ETKDGv3 68
MY8 H192 6.106 -2.481 -1.174 ETKDGv3 69
MY8 H193 5.546 -1.777 0.399 ETKDGv3 70
MY8 H201 4.835 0.495 -2.749 ETKDGv3 71
MY8 H202 6.294 -0.327 -2.230 ETKDGv3 72
MY8 H21 5.228 2.156 -1.381 ETKDGv3 73
MY8 H221 7.331 2.961 -1.806 ETKDGv3 74
MY8 H222 8.775 2.292 -1.000 ETKDGv3 75
MY8 H223 7.928 1.312 -2.259 ETKDGv3 76
MY8 H231 8.590 0.532 0.606 ETKDGv3 77
MY8 H232 7.711 -0.560 -0.514 ETKDGv3 78
MY8 H233 7.022 -0.111 1.105 ETKDGv3 79
MY8 H5 4.076 2.301 1.838 ETKDGv3 80
MY8 H261 0.813 2.869 -1.052 ETKDGv3 81
MY8 H262 1.559 3.237 0.547 ETKDGv3 82
MY8 H263 -0.085 3.845 0.175 ETKDGv3 83
MY8 H27 -2.211 1.519 0.863 ETKDGv3 84
MY8 H28 -0.935 1.441 -1.920 ETKDGv3 85
#