data_MYL
#
_chem_comp.id MYL
_chem_comp.name "Mycalamide A"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAD
_chem_comp.formula "C24 H41 N O10"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms
(2S)-N-{(4R,4aS,6R,8S,8aR)-6-[(2S)-2,3-dihydroxypropyl]-8-methoxy-7,7-dimethylhexahydropyrano[3,2-d][1,3]dioxin-4-yl}-2-hydroxy-2-[(2R,5R,6R)-2-methoxy-5,6-dimethyl-4-methylidenetetrahydro-2H-pyran-2-yl]ethanamide
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2009-08-21
_chem_comp.pdbx_modified_date 2021-03-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 503.583
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code MYL
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3I55
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MYL CAA CAA C 0 1 N N N N N N 83.703 79.568 67.026 -6.141 1.636 -0.423 CAA MYL 1
MYL CAB CAB C 0 1 N N N N N N 80.851 81.492 64.885 -3.955 -2.843 -0.588 CAB MYL 2
MYL CAC CAC C 0 1 N N N N N N 84.493 83.690 66.471 -2.345 0.186 -3.092 CAC MYL 3
MYL CAD CAD C 0 1 N N N N N N 83.367 82.115 68.570 -2.997 2.466 -1.490 CAD MYL 4
MYL CAE CAE C 0 1 N N N N N N 88.908 84.293 58.994 3.384 2.172 -1.925 CAE MYL 5
MYL CAF CAF C 0 1 N N N N N N 87.010 83.190 57.762 5.218 0.479 -1.789 CAF MYL 6
MYL CAG CAG C 0 1 N N N N N N 89.883 80.402 59.146 5.488 0.502 2.096 CAG MYL 7
MYL OAG OAG O 0 1 N N N N N N 84.628 84.444 63.715 -1.646 0.352 2.902 OAG MYL 8
MYL OAH OAH O 0 1 N N N N N N 86.086 88.083 60.589 2.211 -4.993 -0.524 OAH MYL 9
MYL OAI OAI O 0 1 N N N N N N 84.007 85.074 60.657 1.182 -2.330 -0.195 OAI MYL 10
MYL OAJ OAJ O 0 1 N N N N N N 84.135 81.223 62.243 -3.555 -1.410 2.639 OAJ MYL 11
MYL OAK OAK O 0 1 N N N N N N 89.091 81.466 58.611 4.651 0.163 0.988 OAK MYL 12
MYL CAL CAL C 0 1 N N N N N N 84.909 87.293 60.405 3.039 -3.876 -0.194 CAL MYL 13
MYL CAM CAM C 0 1 N N N N N N 88.234 80.259 61.720 0.987 3.272 0.795 CAM MYL 14
MYL CAN CAN C 0 1 N N N N N N 84.044 81.101 65.027 -4.244 0.618 0.775 CAN MYL 15
MYL CAO CAO C 0 1 N N N N N N 86.220 85.279 59.691 3.395 -1.429 -0.557 CAO MYL 16
MYL NAP NAP N 0 1 N N N N N N 86.101 82.969 62.904 -0.607 -0.029 0.980 NAP MYL 17
MYL OAQ OAQ O 0 1 N N N N N N 81.892 81.202 63.948 -4.513 -1.641 -0.054 OAQ MYL 18
MYL OAR OAR O 0 1 N N N N N N 87.913 81.604 62.109 0.039 2.218 0.615 OAR MYL 19
MYL OAS OAS O 0 1 N N N N N N 87.506 79.887 60.539 2.263 2.858 0.299 OAS MYL 20
MYL OAT OAT O 0 1 N N N N N N 82.646 83.139 64.966 -2.678 -0.387 -0.767 OAT MYL 21
MYL OAU OAU O 0 1 N N N N N N 85.613 82.997 60.289 1.646 0.235 -0.654 OAU MYL 22
MYL CAV CAV C 0 1 N N N N N N 83.517 80.811 66.439 -4.894 1.236 -0.446 CAV MYL 23
MYL CAW CAW C 0 1 N N N N N N 84.874 83.348 63.223 -1.617 -0.243 1.846 CAW MYL 24
MYL CAX CAX C 0 1 N N S N N N 85.220 85.827 60.714 2.445 -2.604 -0.803 CAX MYL 25
MYL CAY CAY C 0 1 N N R N N N 83.040 83.228 66.346 -3.356 0.030 -1.954 CAY MYL 26
MYL CAZ CAZ C 0 1 N N R N N N 82.800 81.950 67.157 -4.048 1.374 -1.696 CAZ MYL 27
MYL CBA CBA C 0 1 N N R N N N 86.719 83.903 60.143 2.863 -0.185 -1.272 CBA MYL 28
MYL CBB CBB C 0 1 N N S N N N 83.698 82.396 62.919 -2.711 -1.221 1.502 CBB MYL 29
MYL CBC CBC C 0 1 N N R N N N 86.488 81.712 62.213 0.400 0.996 1.267 CBC MYL 30
MYL CBD CBD C 0 1 N N S N N N 88.208 81.995 59.611 4.110 1.294 0.301 CBD MYL 31
MYL CBE CBE C 0 1 N N N N N N 87.710 83.352 59.115 3.896 0.941 -1.174 CBE MYL 32
MYL CBF CBF C 0 1 N N R N N N 87.032 81.060 59.859 2.770 1.679 0.928 CBF MYL 33
MYL CBG CBG C 0 1 N N S N N N 85.995 81.697 60.773 1.765 0.539 0.738 CBG MYL 34
MYL CBH CBH C 0 1 N N R N N N 83.062 81.970 64.247 -3.538 -0.672 0.338 CBH MYL 35
MYL HAA HAA H 0 1 N N N N N N 83.335 79.382 68.024 -6.726 1.527 0.479 HAA MYL 36
MYL HAAA HAAA H 0 0 N N N N N N 84.216 78.787 66.485 -6.583 2.078 -1.303 HAAA MYL 37
MYL HAB HAB H 0 1 N N N N N N 79.960 80.894 64.641 -4.758 -3.537 -0.835 HAB MYL 38
MYL HABA HABA H 0 0 N N N N N N 81.192 81.243 65.901 -3.385 -2.611 -1.487 HABA MYL 39
MYL HABB HABB H 0 0 N N N N N N 80.600 82.562 64.834 -3.296 -3.298 0.152 HABB MYL 40
MYL HAC HAC H 0 1 N N N N N N 84.769 83.750 67.534 -1.851 -0.769 -3.272 HAC MYL 41
MYL HACA HACA H 0 0 N N N N N N 85.151 82.971 65.961 -2.863 0.504 -3.997 HACA MYL 42
MYL HACB HACB H 0 0 N N N N N N 84.604 84.681 66.007 -1.602 0.934 -2.817 HACB MYL 43
MYL HAD HAD H 0 1 N N N N N N 82.845 82.938 69.081 -2.356 2.200 -0.649 HAD MYL 44
MYL HADA HADA H 0 0 N N N N N N 83.222 81.182 69.134 -2.391 2.562 -2.391 HADA MYL 45
MYL HADB HADB H 0 0 N N N N N N 84.441 82.344 68.509 -3.493 3.414 -1.283 HADB MYL 46
MYL HAE HAE H 0 1 N N N N N N 89.395 84.395 59.975 3.386 1.970 -2.996 HAE MYL 47
MYL HAEA HAEA H 0 0 N N N N N N 89.626 83.881 58.269 2.368 2.399 -1.600 HAEA MYL 48
MYL HAEB HAEB H 0 0 N N N N N N 88.565 85.280 58.650 4.032 3.022 -1.714 HAEB MYL 49
MYL HAF HAF H 0 1 N N N N N N 86.152 82.510 57.871 5.953 1.280 -1.716 HAF MYL 50
MYL HAFA HAFA H 0 0 N N N N N N 86.657 84.171 57.412 5.581 -0.398 -1.253 HAFA MYL 51
MYL HAFB HAFB H 0 0 N N N N N N 87.718 82.772 57.031 5.061 0.224 -2.838 HAFB MYL 52
MYL HAG HAG H 0 1 N N N N N N 90.551 80.012 58.364 5.859 -0.410 2.564 HAG MYL 53
MYL HAGA HAGA H 0 0 N N N N N N 90.484 80.779 59.987 6.330 1.099 1.746 HAGA MYL 54
MYL HAGB HAGB H 0 0 N N N N N N 89.223 79.596 59.499 4.914 1.076 2.823 HAGB MYL 55
MYL HOAH HOAH H 0 0 N N N N N N 85.891 88.993 60.397 2.528 -5.835 -0.170 HOAH MYL 56
MYL HOAI HOAI H 0 0 N N N N N N 84.191 84.162 60.848 1.227 -2.195 0.762 HOAI MYL 57
MYL HOAJ HOAJ H 0 0 N N N N N N 83.390 80.660 62.071 -3.983 -0.601 2.950 HOAJ MYL 58
MYL HAL HAL H 0 1 N N N N N N 84.119 87.650 61.083 3.092 -3.770 0.889 HAL MYL 59
MYL HALA HALA H 0 0 N N N N N N 84.568 87.383 59.363 4.041 -4.036 -0.593 HALA MYL 60
MYL HAM HAM H 0 1 N N N N N N 87.967 79.574 62.538 0.655 4.156 0.252 HAM MYL 61
MYL HAMA HAMA H 0 0 N N N N N N 89.312 80.192 61.514 1.070 3.508 1.856 HAMA MYL 62
MYL HAN HAN H 0 1 N N N N N N 84.181 80.149 64.494 -3.517 1.311 1.196 HAN MYL 63
MYL HANA HANA H 0 0 N N N N N N 85.006 81.629 65.105 -5.006 0.386 1.520 HANA MYL 64
MYL HAO HAO H 0 1 N N N N N N 87.073 85.968 59.609 3.461 -1.234 0.513 HAO MYL 65
MYL HAOA HAOA H 0 0 N N N N N N 85.727 85.185 58.712 4.384 -1.675 -0.943 HAOA MYL 66
MYL HNAP HNAP H 0 0 N N N N N N 86.843 83.592 63.153 -0.546 -0.555 0.167 HNAP MYL 67
MYL HAX HAX H 0 1 N N N N N N 85.661 85.746 61.718 2.310 -2.743 -1.875 HAX MYL 68
MYL HAY HAY H 0 1 N N N N N N 82.378 83.985 66.791 -4.101 -0.717 -2.228 HAY MYL 69
MYL HAZ HAZ H 0 1 N N N N N N 81.724 81.739 67.240 -4.684 1.629 -2.544 HAZ MYL 70
MYL HBA HBA H 0 1 N N N N N N 87.222 84.007 61.116 2.677 -0.419 -2.320 HBA MYL 71
MYL HBB HBB H 0 1 N N N N N N 82.982 82.928 62.275 -2.268 -2.174 1.215 HBB MYL 72
MYL HBC HBC H 0 1 N N N N N N 86.048 80.897 62.806 0.459 1.159 2.343 HBC MYL 73
MYL HBD HBD H 0 1 N N N N N N 88.745 82.100 60.565 4.803 2.132 0.379 HBD MYL 74
MYL HBF HBF H 0 1 N N N N N N 86.581 80.829 58.883 2.908 1.867 1.993 HBF MYL 75
MYL HBG HBG H 0 1 N N N N N N 85.081 81.085 60.762 2.105 -0.345 1.278 HBG MYL 76
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MYL CAV CAA DOUB N N 1
MYL CAA HAA SING N N 2
MYL CAA HAAA SING N N 3
MYL OAQ CAB SING N N 4
MYL CAB HAB SING N N 5
MYL CAB HABA SING N N 6
MYL CAB HABB SING N N 7
MYL CAY CAC SING N N 8
MYL CAC HAC SING N N 9
MYL CAC HACA SING N N 10
MYL CAC HACB SING N N 11
MYL CAZ CAD SING N N 12
MYL CAD HAD SING N N 13
MYL CAD HADA SING N N 14
MYL CAD HADB SING N N 15
MYL CAE CBE SING N N 16
MYL CAE HAE SING N N 17
MYL CAE HAEA SING N N 18
MYL CAE HAEB SING N N 19
MYL CAF CBE SING N N 20
MYL CAF HAF SING N N 21
MYL CAF HAFA SING N N 22
MYL CAF HAFB SING N N 23
MYL OAK CAG SING N N 24
MYL CAG HAG SING N N 25
MYL CAG HAGA SING N N 26
MYL CAG HAGB SING N N 27
MYL CAW OAG DOUB N N 28
MYL CAL OAH SING N N 29
MYL OAH HOAH SING N N 30
MYL OAI CAX SING N N 31
MYL OAI HOAI SING N N 32
MYL OAJ CBB SING N N 33
MYL OAJ HOAJ SING N N 34
MYL OAK CBD SING N N 35
MYL CAL CAX SING N N 36
MYL CAL HAL SING N N 37
MYL CAL HALA SING N N 38
MYL OAS CAM SING N N 39
MYL CAM OAR SING N N 40
MYL CAM HAM SING N N 41
MYL CAM HAMA SING N N 42
MYL CBH CAN SING N N 43
MYL CAN CAV SING N N 44
MYL CAN HAN SING N N 45
MYL CAN HANA SING N N 46
MYL CAO CBA SING N N 47
MYL CAO CAX SING N N 48
MYL CAO HAO SING N N 49
MYL CAO HAOA SING N N 50
MYL CBC NAP SING N N 51
MYL NAP CAW SING N N 52
MYL NAP HNAP SING N N 53
MYL OAQ CBH SING N N 54
MYL OAR CBC SING N N 55
MYL CBF OAS SING N N 56
MYL CBH OAT SING N N 57
MYL OAT CAY SING N N 58
MYL CBA OAU SING N N 59
MYL OAU CBG SING N N 60
MYL CAV CAZ SING N N 61
MYL CBB CAW SING N N 62
MYL CAX HAX SING N N 63
MYL CAY CAZ SING N N 64
MYL CAY HAY SING N N 65
MYL CAZ HAZ SING N N 66
MYL CBE CBA SING N N 67
MYL CBA HBA SING N N 68
MYL CBB CBH SING N N 69
MYL CBB HBB SING N N 70
MYL CBG CBC SING N N 71
MYL CBC HBC SING N N 72
MYL CBE CBD SING N N 73
MYL CBD CBF SING N N 74
MYL CBD HBD SING N N 75
MYL CBF CBG SING N N 76
MYL CBF HBF SING N N 77
MYL CBG HBG SING N N 78
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MYL SMILES ACDLabs 11.02 O=C(NC2OCOC1C(OC)C(C(OC12)CC(O)CO)(C)C)C(O)C3(OC)OC(C)C(C(=C)/C3)C
MYL SMILES_CANONICAL CACTVS 3.352 CO[C@@H]1[C@H]2OCO[C@@H](NC(=O)[C@@H](O)[C@]3(CC(=C)[C@@H](C)[C@@H](C)O3)OC)[C@H]2O[C@H](C[C@H](O)CO)C1(C)C
MYL SMILES CACTVS 3.352 CO[CH]1[CH]2OCO[CH](NC(=O)[CH](O)[C]3(CC(=C)[CH](C)[CH](C)O3)OC)[CH]2O[CH](C[CH](O)CO)C1(C)C
MYL SMILES_CANONICAL "OpenEye OEToolkits" 1.7.0 C[C@H]1[C@H](O[C@](CC1=C)([C@@H](C(=O)N[C@H]2[C@@H]3[C@@H]([C@H](C([C@H](O3)C[C@@H](CO)O)(C)C)OC)OCO2)O)OC)C
MYL SMILES "OpenEye OEToolkits" 1.7.0 CC1C(OC(CC1=C)(C(C(=O)NC2C3C(C(C(C(O3)CC(CO)O)(C)C)OC)OCO2)O)OC)C
MYL InChI InChI 1.03 InChI=1S/C24H41NO10/c1-12-9-24(31-7,35-14(3)13(12)2)19(28)21(29)25-22-18-17(32-11-33-22)20(30-6)23(4,5)16(34-18)8-15(27)10-26/h13-20,22,26-28H,1,8-11H2,2-7H3,(H,25,29)/t13-,14-,15+,16-,17+,18+,19-,20-,22-,24-/m1/s1
MYL InChIKey InChI 1.03 IJASURGZDJYQGF-RXLGVIKCSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MYL "SYSTEMATIC NAME" ACDLabs 11.02 "(2S)-N-{(4R,4aS,6R,8S,8aR)-6-[(2S)-2,3-dihydroxypropyl]-8-methoxy-7,7-dimethylhexahydropyrano[3,2-d][1,3]dioxin-4-yl}-2-hydroxy-2-[(2R,5R,6R)-2-methoxy-5,6-dimethyl-4-methylidenetetrahydro-2H-pyran-2-yl]ethanamide (non-preferred name)"
MYL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.6.1 (2S)-N-[(4R,4aS,6R,8S,8aR)-6-[(2S)-2,3-dihydroxypropyl]-8-methoxy-7,7-dimethyl-4a,6,8,8a-tetrahydro-4H-pyrano[3,2-d][1,3]dioxin-4-yl]-2-hydroxy-2-[(2R,5R,6R)-2-methoxy-5,6-dimethyl-4-methylidene-oxan-2-yl]ethanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MYL 'Create component' 2009-08-21 RCSB
MYL 'Modify descriptor' 2011-06-04 RCSB
MYL 'Modify synonyms' 2021-03-13 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id MYL
_pdbx_chem_comp_synonyms.name
(2S)-N-{(4R,4aS,6R,8S,8aR)-6-[(2S)-2,3-dihydroxypropyl]-8-methoxy-7,7-dimethylhexahydropyrano[3,2-d][1,3]dioxin-4-yl}-2-hydroxy-2-[(2R,5R,6R)-2-methoxy-5,6-dimethyl-4-methylidenetetrahydro-2H-pyran-2-yl]ethanamide
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id MYL
_pdbe_chem_comp_synonyms.name
'(2S)-N-{(4R,4aS,6R,8S,8aR)-6-[(2S)-2,3-dihydroxypropyl]-8-methoxy-7,7-dimethylhexahydropyrano[3,2-d][1,3]dioxin-4-yl}-2-hydroxy-2-[(2R,5R,6R)-2-methoxy-5,6-dimethyl-4-methylidenetetrahydro-2H-pyran-2-yl]ethanamide'
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
MYL CAA C 15.918 -1.036 1
MYL CAB C 11.563 -5.834 2
MYL CAC C 15.858 -6.232 3
MYL CAD C 17.388 -3.652 4
MYL CAE C 4.904 3.232 5
MYL CAF C 5.654 4.531 6
MYL CAG C 9.002 6.232 7
MYL OAG O 12.923 -0.600 8
MYL OAH O 3.805 -2.768 9
MYL OAI O 6.404 -1.268 10
MYL OAJ O 10.290 -3.570 11
MYL OAK O 7.702 5.482 12
MYL CAL C 3.805 -1.268 13
MYL CAM C 11.701 3.263 14
MYL CAN C 13.653 -2.309 15
MYL CAO C 5.104 0.982 16
MYL NAP N 10.325 -0.570 17
MYL OAQ O 11.581 -4.335 18
MYL OAR O 11.701 1.701 19
MYL OAS O 10.342 4.034 20
MYL OAT O 13.623 -4.907 21
MYL OAU O 7.702 0.982 22
MYL CAV C 15.153 -2.327 23
MYL CAW C 11.615 -1.335 24
MYL CAX C 5.104 -0.518 25
MYL CAY C 15.123 -4.925 26
MYL CAZ C 15.888 -3.634 27
MYL CBA C 6.404 1.732 28
MYL CBB C 11.598 -2.835 29
MYL CBC C 10.342 0.930 30
MYL CBD C 7.702 3.982 31
MYL CBE C 6.404 3.232 32
MYL CBF C 9.002 3.232 33
MYL CBG C 9.002 1.732 34
MYL CBH C 12.888 -3.600 35
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
MYL CAV CAA DOUBLE NONE 1
MYL OAQ CAB SINGLE NONE 2
MYL CAY CAC SINGLE BEGINWEDGE 3
MYL CAZ CAD SINGLE BEGINWEDGE 4
MYL CAE CBE SINGLE NONE 5
MYL CAF CBE SINGLE NONE 6
MYL OAK CAG SINGLE NONE 7
MYL CAW OAG DOUBLE NONE 8
MYL CAL OAH SINGLE NONE 9
MYL CAX OAI SINGLE BEGINDASH 10
MYL CBB OAJ SINGLE BEGINDASH 11
MYL CBD OAK SINGLE BEGINDASH 12
MYL CAL CAX SINGLE NONE 13
MYL OAS CAM SINGLE NONE 14
MYL CAM OAR SINGLE NONE 15
MYL CBH CAN SINGLE NONE 16
MYL CAN CAV SINGLE NONE 17
MYL CBA CAO SINGLE BEGINDASH 18
MYL CAO CAX SINGLE NONE 19
MYL CBC NAP SINGLE BEGINWEDGE 20
MYL NAP CAW SINGLE NONE 21
MYL CBH OAQ SINGLE BEGINDASH 22
MYL OAR CBC SINGLE NONE 23
MYL CBF OAS SINGLE NONE 24
MYL CBH OAT SINGLE NONE 25
MYL OAT CAY SINGLE NONE 26
MYL CBA OAU SINGLE NONE 27
MYL OAU CBG SINGLE NONE 28
MYL CAV CAZ SINGLE NONE 29
MYL CBB CAW SINGLE NONE 30
MYL CAY CAZ SINGLE NONE 31
MYL CBE CBA SINGLE NONE 32
MYL CBB CBH SINGLE NONE 33
MYL CBG CBC SINGLE NONE 34
MYL CBE CBD SINGLE NONE 35
MYL CBD CBF SINGLE NONE 36
MYL CBF CBG SINGLE NONE 37
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
MYL MurckoScaffold S1 scaffold 'C=C1CCOC(CC(=O)N[C@@H]2OCO[C@@H]3CCCO[C@H]23)C1' InChI=1S/C15H23NO5/c1-10-4-6-18-11(7-10)8-13(17)16-15-14-12(20-9-21-15)3-2-5-19-14/h11-12,14-15H,1-9H2,(H,16,17)/t11?,12-,14+,15-/m1/s1 RWWNDFGAAIWFPC-CRUAXYHOSA-N
MYL amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
MYL pyranose F2 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
MYL CAA S1 1
MYL OAG S1 1
MYL CAM S1 1
MYL CAN S1 1
MYL NAP S1 1
MYL OAR S1 1
MYL OAS S1 1
MYL OAT S1 1
MYL OAU S1 1
MYL CAV S1 1
MYL CAW S1 1
MYL CAY S1 1
MYL CAZ S1 1
MYL CBA S1 1
MYL CBB S1 1
MYL CBC S1 1
MYL CBD S1 1
MYL CBE S1 1
MYL CBF S1 1
MYL CBG S1 1
MYL CBH S1 1
MYL NAP F1 1
MYL CAW F1 1
MYL OAG F1 1
MYL CBB F1 1
MYL CAZ F2 1
MYL CAY F2 1
MYL OAT F2 1
MYL CBH F2 1
MYL CAN F2 1
MYL CAV F2 1
MYL OAQ F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id MYL
_pdbe_chem_comp_rdkit_properties.exactmw 503.273
_pdbe_chem_comp_rdkit_properties.amw 503.589
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 17
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 10
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 35
_pdbe_chem_comp_rdkit_properties.NumAtoms 76
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 11
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.875
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 3
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 10
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 264.123
_pdbe_chem_comp_rdkit_properties.tpsa 145.170
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.058
_pdbe_chem_comp_rdkit_properties.CrippenMR 122.919
_pdbe_chem_comp_rdkit_properties.chi0v 16.530
_pdbe_chem_comp_rdkit_properties.chi1v 8.463
_pdbe_chem_comp_rdkit_properties.chi2v 4.048
_pdbe_chem_comp_rdkit_properties.chi3v 4.048
_pdbe_chem_comp_rdkit_properties.chi4v 2.468
_pdbe_chem_comp_rdkit_properties.chi0n 57.530
_pdbe_chem_comp_rdkit_properties.chi1n 28.635
_pdbe_chem_comp_rdkit_properties.chi2n 4.048
_pdbe_chem_comp_rdkit_properties.chi3n 4.048
_pdbe_chem_comp_rdkit_properties.chi4n 2.468
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.150
_pdbe_chem_comp_rdkit_properties.kappa1 6.185
_pdbe_chem_comp_rdkit_properties.kappa2 11.076
_pdbe_chem_comp_rdkit_properties.kappa3 5.434
_pdbe_chem_comp_rdkit_properties.Phi 1.957
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
MYL UniChem ChEMBL CHEMBL497719
MYL UniChem PDBe MYL
MYL UniChem ZINC ZINC000026175752
MYL UniChem PubChem 44583760
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
MYL CAA 6.410 -1.355 1.921 ETKDGv3 1
MYL CAB 4.759 2.135 0.641 ETKDGv3 2
MYL CAC 2.706 -3.005 0.662 ETKDGv3 3
MYL CAD 5.487 -2.894 -0.443 ETKDGv3 4
MYL CAE -4.341 -0.548 -1.937 ETKDGv3 5
MYL CAF -5.006 -0.076 0.448 ETKDGv3 6
MYL CAG -5.779 3.246 -0.879 ETKDGv3 7
MYL OAG 1.491 3.324 1.015 ETKDGv3 8
MYL OAH -1.523 -4.165 -1.939 ETKDGv3 9
MYL OAI -2.087 -3.830 0.705 ETKDGv3 10
MYL OAJ 1.298 0.366 2.666 ETKDGv3 11
MYL OAK -5.198 2.144 -1.541 ETKDGv3 12
MYL CAL -1.522 -2.857 -1.432 ETKDGv3 13
MYL CAM -2.022 4.071 -0.684 ETKDGv3 14
MYL CAN 4.215 -0.263 2.140 ETKDGv3 15
MYL CAO -2.250 -1.429 0.598 ETKDGv3 16
MYL NAP 0.325 1.478 0.180 ETKDGv3 17
MYL OAQ 3.827 1.195 0.141 ETKDGv3 18
MYL OAR -1.373 3.100 0.125 ETKDGv3 19
MYL OAS -2.596 3.566 -1.891 ETKDGv3 20
MYL OAT 2.474 -0.632 0.463 ETKDGv3 21
MYL OAU -1.588 0.072 -1.207 ETKDGv3 22
MYL CAV 5.195 -1.125 1.394 ETKDGv3 23
MYL CAW 1.312 2.076 1.033 ETKDGv3 24
MYL CAX -2.396 -2.768 -0.165 ETKDGv3 25
MYL CAY 3.221 -1.740 -0.043 ETKDGv3 26
MYL CAZ 4.779 -1.604 0.016 ETKDGv3 27
MYL CBA -2.512 -0.089 -0.149 ETKDGv3 28
MYL CBB 2.154 1.219 1.946 ETKDGv3 29
MYL CBC -0.549 2.286 -0.678 ETKDGv3 30
MYL CBD -3.968 1.764 -0.934 ETKDGv3 31
MYL CBE -3.961 0.232 -0.647 ETKDGv3 32
MYL CBF -2.793 2.162 -1.878 ETKDGv3 33
MYL CBG -1.445 1.430 -1.609 ETKDGv3 34
MYL CBH 3.203 0.384 1.144 ETKDGv3 35
MYL HAA 7.168 -1.923 1.396 ETKDGv3 36
MYL HAAA 6.671 -0.964 2.900 ETKDGv3 37
MYL HAB 4.962 2.879 -0.156 ETKDGv3 38
MYL HABA 5.725 1.641 0.875 ETKDGv3 39
MYL HABB 4.386 2.698 1.519 ETKDGv3 40
MYL HAC 3.033 -3.921 0.127 ETKDGv3 41
MYL HACA 1.595 -3.004 0.669 ETKDGv3 42
MYL HACB 3.064 -3.045 1.711 ETKDGv3 43
MYL HAD 5.014 -3.285 -1.368 ETKDGv3 44
MYL HADA 5.444 -3.675 0.346 ETKDGv3 45
MYL HADB 6.551 -2.686 -0.683 ETKDGv3 46
MYL HAE -5.289 -0.164 -2.368 ETKDGv3 47
MYL HAEA -3.558 -0.463 -2.718 ETKDGv3 48
MYL HAEB -4.524 -1.618 -1.743 ETKDGv3 49
MYL HAF -5.074 -1.168 0.638 ETKDGv3 50
MYL HAFA -6.015 0.269 0.137 ETKDGv3 51
MYL HAFB -4.741 0.432 1.400 ETKDGv3 52
MYL HAG -6.726 3.507 -1.393 ETKDGv3 53
MYL HAGA -5.114 4.135 -0.924 ETKDGv3 54
MYL HAGB -6.025 2.993 0.176 ETKDGv3 55
MYL HOAH -2.414 -4.308 -2.353 ETKDGv3 56
MYL HOAI -1.125 -3.757 0.943 ETKDGv3 57
MYL HOAJ 1.700 0.227 3.563 ETKDGv3 58
MYL HAL -1.890 -2.161 -2.215 ETKDGv3 59
MYL HALA -0.475 -2.577 -1.186 ETKDGv3 60
MYL HAM -1.301 4.877 -0.941 ETKDGv3 61
MYL HAMA -2.823 4.548 -0.082 ETKDGv3 62
MYL HAN 3.679 -0.908 2.868 ETKDGv3 63
MYL HANA 4.742 0.519 2.730 ETKDGv3 64
MYL HAO -1.209 -1.382 0.990 ETKDGv3 65
MYL HAOA -2.896 -1.472 1.500 ETKDGv3 66
MYL HNAP 0.266 0.438 0.172 ETKDGv3 67
MYL HAX -3.453 -2.907 -0.448 ETKDGv3 68
MYL HAY 2.947 -1.843 -1.115 ETKDGv3 69
MYL HAZ 5.075 -0.817 -0.711 ETKDGv3 70
MYL HBA -2.278 0.654 0.651 ETKDGv3 71
MYL HBB 2.674 1.899 2.662 ETKDGv3 72
MYL HBC 0.114 2.924 -1.312 ETKDGv3 73
MYL HBD -3.808 2.267 0.051 ETKDGv3 74
MYL HBF -3.104 1.875 -2.907 ETKDGv3 75
MYL HBG -0.911 1.395 -2.585 ETKDGv3 76
#