data_MYM
#
_chem_comp.id MYM
_chem_comp.name
"S-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] (5beta,7alpha,8alpha,10alpha,12alpha)-7-hydroxyatis-16-ene-18-thioate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C31 H51 N2 O9 P S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-04-24
_chem_comp.pdbx_modified_date 2019-07-19
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 658.783
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code MYM
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6OMR
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MYM C10 C1 C 0 1 N N N N N N 42.808 46.684 26.788 1.229 -1.315 -0.475 C10 MYM 1
MYM C13 C2 C 0 1 N N N N N N 47.208 47.785 25.094 -3.489 -1.114 0.859 C13 MYM 2
MYM C15 C3 C 0 1 N N N N N N 46.983 44.929 23.299 -7.147 -1.570 1.346 C15 MYM 3
MYM C17 C4 C 0 1 N N N N N N 48.284 43.441 21.620 -8.528 0.435 1.822 C17 MYM 4
MYM C20 C5 C 0 1 N N N N N N 49.698 42.795 21.435 -8.942 0.420 0.349 C20 MYM 5
MYM C21 C6 C 0 1 N N N N N N 40.993 49.497 30.710 5.060 -1.407 -3.148 C21 MYM 6
MYM C22 C7 C 0 1 N N N N N N 42.813 50.622 29.493 5.620 -2.934 -1.301 C22 MYM 7
MYM C24 C8 C 0 1 N N N N N N 45.185 50.563 30.362 7.349 -2.151 0.326 C24 MYM 8
MYM C26 C9 C 0 1 N N N N N N 45.542 48.070 30.308 5.847 -0.427 1.299 C26 MYM 9
MYM C28 C10 C 0 1 N N N N N N 47.253 49.537 32.463 8.747 0.071 1.711 C28 MYM 10
MYM O04 O1 O 0 1 N N N N N N 51.354 41.274 19.509 -11.159 1.409 -1.857 O04 MYM 11
MYM P01 P1 P 0 1 N N N N N N 50.275 40.404 20.396 -9.737 2.106 -1.566 P01 MYM 12
MYM O05 O2 O 0 1 N N N N N N 49.070 40.040 19.363 -8.736 1.608 -2.535 O05 MYM 13
MYM O06 O3 O 0 1 N N N N N N 50.891 39.179 20.984 -9.882 3.703 -1.715 O06 MYM 14
MYM O03 O4 O 0 1 N N N N N N 49.616 41.390 21.548 -9.261 1.748 -0.070 O03 MYM 15
MYM C18 C11 C 0 1 N N N N N N 48.313 44.751 20.809 -7.302 1.333 1.998 C18 MYM 16
MYM C19 C12 C 0 1 N N N N N N 47.121 42.577 21.052 -9.682 0.974 2.670 C19 MYM 17
MYM C16 C13 C 0 1 N N R N N N 47.974 43.736 23.149 -8.187 -0.988 2.270 C16 MYM 18
MYM O02 O5 O 0 1 N N N N N N 49.161 43.965 23.957 -9.365 -1.796 2.230 O02 MYM 19
MYM O07 O6 O 0 1 N N N N N N 45.770 44.762 23.172 -7.460 -2.421 0.541 O07 MYM 20
MYM N02 N1 N 0 1 N N N N N N 47.563 46.119 23.518 -5.871 -1.143 1.415 N02 MYM 21
MYM C14 C14 C 0 1 N N N N N N 46.845 47.370 23.684 -4.840 -1.781 0.592 C14 MYM 22
MYM C12 C15 C 0 1 N N N N N N 46.423 46.854 26.083 -2.429 -1.770 0.012 C12 MYM 23
MYM O08 O7 O 0 1 N N N N N N 47.016 46.004 26.752 -2.725 -2.682 -0.730 O08 MYM 24
MYM N01 N2 N 0 1 N N N N N N 45.084 47.016 26.136 -1.152 -1.344 0.081 N01 MYM 25
MYM C11 C16 C 0 1 N N N N N N 44.251 46.278 27.076 -0.122 -1.982 -0.742 C11 MYM 26
MYM S01 S1 S 0 1 N N N N N N 42.509 48.387 27.457 2.502 -2.103 -1.492 S01 MYM 27
MYM C09 C17 C 0 1 N N N N N N 42.409 48.074 29.276 3.871 -1.193 -1.013 C09 MYM 28
MYM O09 O8 O 0 1 N N N N N N 42.300 46.948 29.759 3.753 -0.307 -0.192 O09 MYM 29
MYM C08 C18 C 0 1 N N R N N N 42.426 49.304 30.217 5.221 -1.492 -1.610 C08 MYM 30
MYM C07 C19 C 0 1 N N S N N N 43.421 49.142 31.476 6.282 -0.498 -1.195 C07 MYM 31
MYM C06 C20 C 0 1 N N N N N N 43.137 47.921 32.384 5.837 0.954 -1.363 C06 MYM 32
MYM C05 C21 C 0 1 N N R N N N 43.794 48.116 33.765 7.087 1.840 -1.315 C05 MYM 33
MYM O01 O9 O 0 1 N N N N N N 43.504 46.979 34.617 6.702 3.203 -1.500 O01 MYM 34
MYM C23 C22 C 0 1 N N N N N N 44.311 50.623 29.116 6.172 -3.097 0.108 C23 MYM 35
MYM C25 C23 C 0 1 N N S N N N 44.973 49.250 31.144 6.867 -0.696 0.198 C25 MYM 36
MYM C27 C24 C 0 1 N N S N N N 45.725 49.418 32.576 8.080 0.223 0.348 C27 MYM 37
MYM C29 C25 C 0 1 N N S N N N 47.780 48.798 33.712 9.021 1.462 2.302 C29 MYM 38
MYM C30 C26 C 0 1 N N N N N N 47.601 47.293 33.517 7.675 2.173 2.487 C30 MYM 39
MYM C31 C27 C 0 1 N N N N N N 46.110 46.960 33.452 7.028 2.401 1.122 C31 MYM 40
MYM C04 C28 C 0 1 N N R N N N 45.344 48.321 33.680 7.804 1.682 0.024 C04 MYM 41
MYM C03 C29 C 0 1 N N N N N N 45.796 48.786 35.062 9.180 2.388 -0.091 C03 MYM 42
MYM C02 C30 C 0 1 N N N N N N 47.090 49.262 34.856 9.823 2.252 1.279 C02 MYM 43
MYM C01 C31 C 0 1 N N N N N N 47.610 50.248 35.699 10.990 2.782 1.560 C01 MYM 44
MYM H1 H1 H 0 1 N N N N N N 42.634 46.680 25.702 1.167 -0.256 -0.727 H1 MYM 45
MYM H2 H2 H 0 1 N N N N N N 42.122 45.973 27.272 1.486 -1.423 0.578 H2 MYM 46
MYM H3 H3 H 0 1 N N N N N N 48.291 47.670 25.251 -3.551 -0.055 0.607 H3 MYM 47
MYM H4 H4 H 0 1 N N N N N N 46.922 48.834 25.261 -3.232 -1.222 1.912 H4 MYM 48
MYM H5 H5 H 0 1 N N N N N N 50.377 43.182 22.209 -8.120 0.036 -0.256 H5 MYM 49
MYM H6 H6 H 0 1 N N N N N N 50.089 43.056 20.440 -9.815 -0.220 0.223 H6 MYM 50
MYM H7 H7 H 0 1 N N N N N N 40.951 50.364 31.386 4.287 -2.104 -3.471 H7 MYM 51
MYM H8 H8 H 0 1 N N N N N N 40.330 49.671 29.850 4.774 -0.393 -3.427 H8 MYM 52
MYM H9 H9 H 0 1 N N N N N N 40.666 48.595 31.249 6.004 -1.663 -3.628 H9 MYM 53
MYM H10 H10 H 0 1 N N N N N N 42.609 51.473 30.160 4.740 -3.577 -1.419 H10 MYM 54
MYM H11 H11 H 0 1 N N N N N N 42.211 50.721 28.578 6.374 -3.259 -2.025 H11 MYM 55
MYM H12 H12 H 0 1 N N N N N N 46.241 50.632 30.061 7.767 -2.304 1.320 H12 MYM 56
MYM H13 H13 H 0 1 N N N N N N 44.934 51.412 31.015 8.115 -2.338 -0.426 H13 MYM 57
MYM H14 H14 H 0 1 N N N N N N 45.396 47.128 30.856 6.350 -0.417 2.266 H14 MYM 58
MYM H15 H15 H 0 1 N N N N N N 45.017 48.018 29.343 5.372 0.539 1.127 H15 MYM 59
MYM H16 H16 H 0 1 N N N N N N 46.616 48.230 30.133 5.089 -1.211 1.292 H16 MYM 60
MYM H17 H17 H 0 1 N N N N N N 47.615 49.056 31.542 8.144 -0.507 2.399 H17 MYM 61
MYM H18 H18 H 0 1 N N N N N N 47.565 50.592 32.473 9.708 -0.441 1.577 H18 MYM 62
MYM H19 H19 H 0 1 N N N N N N 51.034 41.363 18.619 -11.865 1.689 -1.258 H19 MYM 63
MYM H20 H20 H 0 1 N N N N N N 50.456 38.408 20.638 -10.167 3.991 -2.593 H20 MYM 64
MYM H21 H21 H 0 1 N N N N N N 49.125 45.394 21.180 -6.530 1.037 1.288 H21 MYM 65
MYM H22 H22 H 0 1 N N N N N N 48.484 44.521 19.747 -7.583 2.371 1.817 H22 MYM 66
MYM H23 H23 H 0 1 N N N N N N 47.351 45.273 20.921 -6.920 1.231 3.014 H23 MYM 67
MYM H24 H24 H 0 1 N N N N N N 47.064 41.628 21.605 -9.367 1.039 3.711 H24 MYM 68
MYM H25 H25 H 0 1 N N N N N N 46.172 43.122 21.162 -9.964 1.964 2.313 H25 MYM 69
MYM H26 H26 H 0 1 N N N N N N 47.304 42.370 19.987 -10.536 0.301 2.591 H26 MYM 70
MYM H27 H27 H 0 1 N N N N N N 47.461 42.845 23.541 -7.797 -0.965 3.287 H27 MYM 71
MYM H28 H28 H 0 1 N N N N N N 48.905 44.134 24.856 -9.767 -1.862 1.353 H28 MYM 72
MYM H29 H29 H 0 1 N N N N N N 48.561 46.146 23.571 -5.634 -0.414 2.009 H29 MYM 73
MYM H30 H30 H 0 1 N N N N N N 47.181 48.119 22.952 -5.097 -1.673 -0.461 H30 MYM 74
MYM H31 H31 H 0 1 N N N N N N 45.760 47.220 23.583 -4.778 -2.840 0.844 H31 MYM 75
MYM H32 H32 H 0 1 N N N N N N 44.650 47.664 25.510 -0.916 -0.615 0.675 H32 MYM 76
MYM H33 H33 H 0 1 N N N N N N 44.378 45.195 26.928 -0.379 -1.874 -1.795 H33 MYM 77
MYM H34 H34 H 0 1 N N N N N N 44.520 46.540 28.110 -0.060 -3.041 -0.490 H34 MYM 78
MYM H35 H35 H 0 1 N N N N N N 43.211 50.020 32.105 7.138 -0.635 -1.905 H35 MYM 79
MYM H36 H36 H 0 1 N N N N N N 42.050 47.809 32.512 5.354 1.093 -2.332 H36 MYM 80
MYM H37 H37 H 0 1 N N N N N N 43.546 47.015 31.912 5.149 1.253 -0.580 H37 MYM 81
MYM H38 H38 H 0 1 N N N N N N 43.364 49.022 34.218 7.760 1.544 -2.123 H38 MYM 82
MYM H39 H39 H 0 1 N N N N N N 43.912 47.106 35.465 6.258 3.376 -2.341 H39 MYM 83
MYM H40 H40 H 0 1 N N N N N N 44.524 49.748 28.484 5.394 -2.938 0.848 H40 MYM 84
MYM H41 H41 H 0 1 N N N N N N 44.541 51.543 28.558 6.533 -4.130 0.226 H41 MYM 85
MYM H42 H42 H 0 1 N N N N N N 45.371 50.378 32.980 8.825 -0.130 -0.403 H42 MYM 86
MYM H43 H43 H 0 1 N N N N N N 48.855 49.011 33.810 9.557 1.384 3.245 H43 MYM 87
MYM H44 H44 H 0 1 N N N N N N 48.060 46.757 34.361 7.022 1.562 3.108 H44 MYM 88
MYM H45 H45 H 0 1 N N N N N N 48.087 46.985 32.579 7.840 3.135 2.975 H45 MYM 89
MYM H46 H46 H 0 1 N N N N N N 45.856 46.540 32.468 5.988 2.108 1.134 H46 MYM 90
MYM H47 H47 H 0 1 N N N N N N 45.846 46.238 34.238 7.063 3.483 0.913 H47 MYM 91
MYM H48 H48 H 0 1 N N N N N N 45.141 49.586 35.438 9.782 1.889 -0.846 H48 MYM 92
MYM H49 H49 H 0 1 N N N N N N 45.797 47.948 35.775 9.032 3.436 -0.342 H49 MYM 93
MYM H51 H51 H 0 1 N N N N N N 47.010 50.639 36.507 11.413 2.665 2.546 H51 MYM 94
MYM H52 H52 H 0 1 N N N N N N 48.612 50.619 35.542 11.527 3.336 0.804 H52 MYM 95
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MYM O05 P01 DOUB N N 1
MYM O04 P01 SING N N 2
MYM P01 O06 SING N N 3
MYM P01 O03 SING N N 4
MYM C18 C17 SING N N 5
MYM C19 C17 SING N N 6
MYM C20 O03 SING N N 7
MYM C20 C17 SING N N 8
MYM C17 C16 SING N N 9
MYM C16 C15 SING N N 10
MYM C16 O02 SING N N 11
MYM O07 C15 DOUB N N 12
MYM C15 N02 SING N N 13
MYM N02 C14 SING N N 14
MYM C14 C13 SING N N 15
MYM C13 C12 SING N N 16
MYM C12 N01 SING N N 17
MYM C12 O08 DOUB N N 18
MYM N01 C11 SING N N 19
MYM C10 C11 SING N N 20
MYM C10 S01 SING N N 21
MYM S01 C09 SING N N 22
MYM C23 C22 SING N N 23
MYM C23 C24 SING N N 24
MYM C09 O09 DOUB N N 25
MYM C09 C08 SING N N 26
MYM C22 C08 SING N N 27
MYM C08 C21 SING N N 28
MYM C08 C07 SING N N 29
MYM C26 C25 SING N N 30
MYM C24 C25 SING N N 31
MYM C25 C07 SING N N 32
MYM C25 C27 SING N N 33
MYM C07 C06 SING N N 34
MYM C06 C05 SING N N 35
MYM C28 C27 SING N N 36
MYM C28 C29 SING N N 37
MYM C27 C04 SING N N 38
MYM C31 C30 SING N N 39
MYM C31 C04 SING N N 40
MYM C30 C29 SING N N 41
MYM C04 C05 SING N N 42
MYM C04 C03 SING N N 43
MYM C29 C02 SING N N 44
MYM C05 O01 SING N N 45
MYM C02 C03 SING N N 46
MYM C02 C01 DOUB N N 47
MYM C10 H1 SING N N 48
MYM C10 H2 SING N N 49
MYM C13 H3 SING N N 50
MYM C13 H4 SING N N 51
MYM C20 H5 SING N N 52
MYM C20 H6 SING N N 53
MYM C21 H7 SING N N 54
MYM C21 H8 SING N N 55
MYM C21 H9 SING N N 56
MYM C22 H10 SING N N 57
MYM C22 H11 SING N N 58
MYM C24 H12 SING N N 59
MYM C24 H13 SING N N 60
MYM C26 H14 SING N N 61
MYM C26 H15 SING N N 62
MYM C26 H16 SING N N 63
MYM C28 H17 SING N N 64
MYM C28 H18 SING N N 65
MYM O04 H19 SING N N 66
MYM O06 H20 SING N N 67
MYM C18 H21 SING N N 68
MYM C18 H22 SING N N 69
MYM C18 H23 SING N N 70
MYM C19 H24 SING N N 71
MYM C19 H25 SING N N 72
MYM C19 H26 SING N N 73
MYM C16 H27 SING N N 74
MYM O02 H28 SING N N 75
MYM N02 H29 SING N N 76
MYM C14 H30 SING N N 77
MYM C14 H31 SING N N 78
MYM N01 H32 SING N N 79
MYM C11 H33 SING N N 80
MYM C11 H34 SING N N 81
MYM C07 H35 SING N N 82
MYM C06 H36 SING N N 83
MYM C06 H37 SING N N 84
MYM C05 H38 SING N N 85
MYM O01 H39 SING N N 86
MYM C23 H40 SING N N 87
MYM C23 H41 SING N N 88
MYM C27 H42 SING N N 89
MYM C29 H43 SING N N 90
MYM C30 H44 SING N N 91
MYM C30 H45 SING N N 92
MYM C31 H46 SING N N 93
MYM C31 H47 SING N N 94
MYM C03 H48 SING N N 95
MYM C03 H49 SING N N 96
MYM C01 H51 SING N N 97
MYM C01 H52 SING N N 98
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MYM SMILES ACDLabs 12.01 C(CNC(CCNC(C(C(COP(O)(O)=O)(C)C)O)=O)=O)SC(=O)C1(C)CCCC4(C)C1CC(O)C32C4CC(/C(C2)=C)CC3
MYM InChI InChI 1.03 InChI=1S/C31H51N2O9PS/c1-19-17-31-11-7-20(19)15-22(31)29(4)9-6-10-30(5,21(29)16-23(31)34)27(38)44-14-13-32-24(35)8-12-33-26(37)25(36)28(2,3)18-42-43(39,40)41/h20-23,25,34,36H,1,6-18H2,2-5H3,(H,32,35)(H,33,37)(H2,39,40,41)/t20-,21-,22-,23+,25-,29+,30+,31+/m0/s1
MYM InChIKey InChI 1.03 PHQDCKXVLPNCFQ-HHFPKWFXSA-N
MYM SMILES_CANONICAL CACTVS 3.385 CC(C)(CO[P](O)(O)=O)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)[C@]1(C)CCC[C@]2(C)[C@@H]1C[C@@H](O)[C@@]34CC[C@@H](C[C@@H]23)C(=C)C4
MYM SMILES CACTVS 3.385 CC(C)(CO[P](O)(O)=O)[CH](O)C(=O)NCCC(=O)NCCSC(=O)[C]1(C)CCC[C]2(C)[CH]1C[CH](O)[C]34CC[CH](C[CH]23)C(=C)C4
MYM SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 C[C@@]12CCC[C@@]([C@H]1C[C@H]([C@]34[C@H]2C[C@H](CC3)C(=C)C4)O)(C)C(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)O)O
MYM SMILES "OpenEye OEToolkits" 2.0.7 CC12CCCC(C1CC(C34C2CC(CC3)C(=C)C4)O)(C)C(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)O)O
#
_pdbx_chem_comp_identifier.comp_id MYM
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program ACDLabs
_pdbx_chem_comp_identifier.program_version 12.01
_pdbx_chem_comp_identifier.identifier
"S-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] (5beta,7alpha,8alpha,10alpha,12alpha)-7-hydroxyatis-16-ene-18-thioate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MYM 'Create component' 2019-04-24 RCSB
MYM 'Initial release' 2019-07-24 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
MYM C10 C 1.816 -1.730 1
MYM C13 C -3.392 -1.568 2
MYM C15 C -7.286 -0.821 3
MYM C17 C -9.884 -0.819 4
MYM C20 C -11.184 -1.568 5
MYM C21 C 4.353 -0.133 6
MYM C22 C 6.039 -2.133 7
MYM C24 C 8.426 -1.337 8
MYM C26 C 9.438 0.170 9
MYM C28 C 9.598 2.237 10
MYM O04 O -14.531 -0.267 11
MYM P01 P -13.782 -1.566 12
MYM O05 O -15.081 -2.315 13
MYM O06 O -13.033 -2.866 14
MYM O03 O -12.482 -0.817 15
MYM C18 C -9.133 0.479 16
MYM C19 C -10.633 0.480 17
MYM C16 C -8.586 -1.571 18
MYM O02 O -8.587 -3.071 19
MYM O07 O -7.285 0.679 20
MYM N02 N -5.988 -1.571 21
MYM C14 C -4.689 -0.820 22
MYM C12 C -2.090 -0.821 23
MYM O08 O -2.084 0.678 24
MYM N01 N -0.798 -1.585 25
MYM C11 C 0.533 -0.883 26
MYM S01 S 3.156 -1.066 27
MYM C09 C 4.611 -1.812 28
MYM O09 O 4.691 -3.216 29
MYM C08 C 5.660 -0.717 30
MYM C07 C 6.809 0.443 31
MYM C06 C 5.835 0.129 32
MYM C05 C 5.372 1.408 33
MYM O01 O 3.947 1.880 34
MYM C23 C 7.444 -2.453 35
MYM C25 C 7.936 0.146 36
MYM C27 C 8.338 1.504 37
MYM C29 C 9.610 3.791 38
MYM C30 C 8.858 2.927 39
MYM C31 C 7.602 3.426 40
MYM C04 C 6.849 2.440 41
MYM C03 C 6.927 3.943 42
MYM C02 C 8.302 4.636 43
MYM C01 C 8.379 6.132 44
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
MYM O05 P01 DOUBLE NONE 1
MYM O04 P01 SINGLE NONE 2
MYM P01 O06 SINGLE NONE 3
MYM P01 O03 SINGLE NONE 4
MYM C18 C17 SINGLE NONE 5
MYM C19 C17 SINGLE NONE 6
MYM C20 O03 SINGLE NONE 7
MYM C20 C17 SINGLE NONE 8
MYM C17 C16 SINGLE NONE 9
MYM C16 C15 SINGLE NONE 10
MYM C16 O02 SINGLE BEGINDASH 11
MYM O07 C15 DOUBLE NONE 12
MYM C15 N02 SINGLE NONE 13
MYM N02 C14 SINGLE NONE 14
MYM C14 C13 SINGLE NONE 15
MYM C13 C12 SINGLE NONE 16
MYM C12 N01 SINGLE NONE 17
MYM C12 O08 DOUBLE NONE 18
MYM N01 C11 SINGLE NONE 19
MYM C10 C11 SINGLE NONE 20
MYM C10 S01 SINGLE NONE 21
MYM S01 C09 SINGLE NONE 22
MYM C23 C22 SINGLE NONE 23
MYM C23 C24 SINGLE NONE 24
MYM C09 O09 DOUBLE NONE 25
MYM C09 C08 SINGLE NONE 26
MYM C22 C08 SINGLE NONE 27
MYM C08 C21 SINGLE BEGINDASH 28
MYM C08 C07 SINGLE NONE 29
MYM C25 C26 SINGLE BEGINWEDGE 30
MYM C24 C25 SINGLE NONE 31
MYM C25 C07 SINGLE NONE 32
MYM C25 C27 SINGLE NONE 33
MYM C07 C06 SINGLE NONE 34
MYM C06 C05 SINGLE NONE 35
MYM C28 C27 SINGLE NONE 36
MYM C28 C29 SINGLE NONE 37
MYM C27 C04 SINGLE NONE 38
MYM C31 C30 SINGLE NONE 39
MYM C04 C31 SINGLE BEGINWEDGE 40
MYM C30 C29 SINGLE NONE 41
MYM C04 C05 SINGLE NONE 42
MYM C04 C03 SINGLE NONE 43
MYM C29 C02 SINGLE NONE 44
MYM C05 O01 SINGLE BEGINWEDGE 45
MYM C02 C03 SINGLE NONE 46
MYM C02 C01 DOUBLE NONE 47
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
MYM MurckoScaffold S1 scaffold 'C=C1C[C@]23CC[C@H]1C[C@H]2C1CCCC[C@H]1CC3' InChI=1S/C17H26/c1-12-11-17-8-6-13-4-2-3-5-15(13)16(17)10-14(12)7-9-17/h13-16H,1-11H2/t13-,14-,15?,16-,17-/m0/s1 PEBHEZCYZWMTGF-RYVYUVHZSA-N
MYM amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
MYM cyclohexane F2 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
MYM phosphate F3 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
MYM C22 S1 1
MYM C24 S1 1
MYM C28 S1 1
MYM C08 S1 1
MYM C07 S1 1
MYM C06 S1 1
MYM C05 S1 1
MYM C23 S1 1
MYM C25 S1 1
MYM C27 S1 1
MYM C29 S1 1
MYM C30 S1 1
MYM C31 S1 1
MYM C04 S1 1
MYM C03 S1 1
MYM C02 S1 1
MYM C01 S1 1
MYM N02 F1 1
MYM C15 F1 1
MYM O07 F1 1
MYM C16 F1 1
MYM N01 F1 2
MYM C12 F1 2
MYM O08 F1 2
MYM C13 F1 2
MYM C22 F2 1
MYM C23 F2 1
MYM C24 F2 1
MYM C25 F2 1
MYM C07 F2 1
MYM C08 F2 1
MYM C28 F2 2
MYM C27 F2 2
MYM C04 F2 2
MYM C31 F2 2
MYM C30 F2 2
MYM C29 F2 2
MYM C28 F2 3
MYM C27 F2 3
MYM C04 F2 3
MYM C03 F2 3
MYM C02 F2 3
MYM C29 F2 3
MYM C07 F2 4
MYM C25 F2 4
MYM C27 F2 4
MYM C04 F2 4
MYM C05 F2 4
MYM C06 F2 4
MYM C29 F2 5
MYM C30 F2 5
MYM C31 F2 5
MYM C04 F2 5
MYM C03 F2 5
MYM C02 F2 5
MYM O04 F3 1
MYM P01 F3 1
MYM O05 F3 1
MYM O06 F3 1
MYM O03 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id MYM
_pdbe_chem_comp_rdkit_properties.exactmw 658.305
_pdbe_chem_comp_rdkit_properties.amw 658.795
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 11
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 20
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 10
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 44
_pdbe_chem_comp_rdkit_properties.NumAtoms 95
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 13
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.839
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 5
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 5
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 1
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 2
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 8
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 336.638
_pdbe_chem_comp_rdkit_properties.tpsa 182.490
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.305
_pdbe_chem_comp_rdkit_properties.CrippenMR 167.085
_pdbe_chem_comp_rdkit_properties.chi0v 22.635
_pdbe_chem_comp_rdkit_properties.chi1v 13.285
_pdbe_chem_comp_rdkit_properties.chi2v 6.585
_pdbe_chem_comp_rdkit_properties.chi3v 6.585
_pdbe_chem_comp_rdkit_properties.chi4v 4.395
_pdbe_chem_comp_rdkit_properties.chi0n 71.924
_pdbe_chem_comp_rdkit_properties.chi1n 36.035
_pdbe_chem_comp_rdkit_properties.chi2n 5.585
_pdbe_chem_comp_rdkit_properties.chi3n 5.585
_pdbe_chem_comp_rdkit_properties.chi4n 3.656
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.270
_pdbe_chem_comp_rdkit_properties.kappa1 7.953
_pdbe_chem_comp_rdkit_properties.kappa2 13.087
_pdbe_chem_comp_rdkit_properties.kappa3 7.015
_pdbe_chem_comp_rdkit_properties.Phi 2.365
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
MYM UniChem PDBe MYM
MYM UniChem PubChem 138857418
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
MYM C10 0.085 2.226 1.986 ETKDGv3 1
MYM C13 4.451 -0.175 2.296 ETKDGv3 2
MYM C15 6.876 0.626 0.344 ETKDGv3 3
MYM C17 8.634 0.566 -1.527 ETKDGv3 4
MYM C20 10.163 0.481 -1.778 ETKDGv3 5
MYM C21 -2.709 -0.509 2.985 ETKDGv3 6
MYM C22 -2.139 -1.298 0.667 ETKDGv3 7
MYM C24 -4.236 -2.216 -0.462 ETKDGv3 8
MYM C26 -4.339 0.132 -1.417 ETKDGv3 9
MYM C28 -7.041 -1.547 -1.590 ETKDGv3 10
MYM O04 13.107 0.651 -0.842 ETKDGv3 11
MYM P01 12.372 -0.732 -1.485 ETKDGv3 12
MYM O05 12.646 -0.806 -2.970 ETKDGv3 13
MYM O06 13.020 -2.103 -0.734 ETKDGv3 14
MYM O03 10.690 -0.694 -1.201 ETKDGv3 15
MYM C18 7.951 -0.643 -2.209 ETKDGv3 16
MYM C19 8.106 1.864 -2.182 ETKDGv3 17
MYM C16 8.350 0.560 0.013 ETKDGv3 18
MYM O02 9.017 1.634 0.631 ETKDGv3 19
MYM O07 6.302 1.747 0.421 ETKDGv3 20
MYM N02 6.128 -0.582 0.547 ETKDGv3 21
MYM C14 4.697 -0.580 0.841 ETKDGv3 22
MYM C12 2.984 -0.187 2.601 ETKDGv3 23
MYM O08 2.470 -1.205 3.141 ETKDGv3 24
MYM N01 2.165 0.932 2.240 ETKDGv3 25
MYM C11 0.723 0.930 2.482 ETKDGv3 26
MYM S01 -1.689 2.319 2.424 ETKDGv3 27
MYM C09 -2.267 1.176 1.147 ETKDGv3 28
MYM O09 -2.191 1.552 -0.011 ETKDGv3 29
MYM C08 -2.894 -0.193 1.471 ETKDGv3 30
MYM C07 -4.450 -0.221 1.153 ETKDGv3 31
MYM C06 -5.179 1.107 1.493 ETKDGv3 32
MYM C05 -6.709 0.926 1.500 ETKDGv3 33
MYM O01 -7.361 2.122 1.853 ETKDGv3 34
MYM C23 -3.009 -2.530 0.413 ETKDGv3 35
MYM C25 -4.859 -0.783 -0.263 ETKDGv3 36
MYM C27 -6.438 -0.930 -0.278 ETKDGv3 37
MYM C29 -8.279 -0.748 -2.049 ETKDGv3 38
MYM C30 -7.850 0.713 -2.305 ETKDGv3 39
MYM C31 -7.345 1.380 -0.994 ETKDGv3 40
MYM C04 -7.268 0.337 0.170 ETKDGv3 41
MYM C03 -8.740 -0.144 0.401 ETKDGv3 42
MYM C02 -9.258 -0.738 -0.893 ETKDGv3 43
MYM C01 -10.500 -1.225 -0.997 ETKDGv3 44
MYM H1 0.594 3.088 2.467 ETKDGv3 45
MYM H2 0.216 2.321 0.886 ETKDGv3 46
MYM H3 4.980 -0.882 2.972 ETKDGv3 47
MYM H4 4.853 0.843 2.484 ETKDGv3 48
MYM H5 10.651 1.383 -1.341 ETKDGv3 49
MYM H6 10.349 0.486 -2.878 ETKDGv3 50
MYM H7 -3.249 0.223 3.621 ETKDGv3 51
MYM H8 -1.639 -0.493 3.275 ETKDGv3 52
MYM H9 -3.098 -1.518 3.236 ETKDGv3 53
MYM H10 -1.225 -1.624 1.210 ETKDGv3 54
MYM H11 -1.769 -0.924 -0.310 ETKDGv3 55
MYM H12 -4.981 -3.013 -0.246 ETKDGv3 56
MYM H13 -3.961 -2.374 -1.529 ETKDGv3 57
MYM H14 -4.901 0.001 -2.357 ETKDGv3 58
MYM H15 -3.288 -0.094 -1.676 ETKDGv3 59
MYM H16 -4.366 1.205 -1.174 ETKDGv3 60
MYM H17 -6.310 -1.610 -2.420 ETKDGv3 61
MYM H18 -7.350 -2.599 -1.396 ETKDGv3 62
MYM H19 12.872 0.636 0.120 ETKDGv3 63
MYM H20 13.998 -2.023 -0.863 ETKDGv3 64
MYM H21 8.259 -1.595 -1.726 ETKDGv3 65
MYM H22 6.845 -0.564 -2.149 ETKDGv3 66
MYM H23 8.226 -0.694 -3.285 ETKDGv3 67
MYM H24 8.549 2.761 -1.698 ETKDGv3 68
MYM H25 8.368 1.892 -3.262 ETKDGv3 69
MYM H26 7.001 1.933 -2.106 ETKDGv3 70
MYM H27 8.748 -0.393 0.435 ETKDGv3 71
MYM H28 9.058 1.430 1.602 ETKDGv3 72
MYM H29 6.606 -1.503 0.419 ETKDGv3 73
MYM H30 4.292 -1.602 0.674 ETKDGv3 74
MYM H31 4.173 0.113 0.148 ETKDGv3 75
MYM H32 2.618 1.755 1.779 ETKDGv3 76
MYM H33 0.536 0.819 3.572 ETKDGv3 77
MYM H34 0.274 0.071 1.945 ETKDGv3 78
MYM H35 -4.882 -0.963 1.864 ETKDGv3 79
MYM H36 -4.893 1.922 0.800 ETKDGv3 80
MYM H37 -4.878 1.443 2.508 ETKDGv3 81
MYM H38 -6.930 0.195 2.310 ETKDGv3 82
MYM H39 -6.997 2.852 1.288 ETKDGv3 83
MYM H40 -2.397 -3.312 -0.086 ETKDGv3 84
MYM H41 -3.344 -2.953 1.384 ETKDGv3 85
MYM H42 -6.654 -1.686 0.514 ETKDGv3 86
MYM H43 -8.714 -1.196 -2.970 ETKDGv3 87
MYM H44 -7.055 0.742 -3.081 ETKDGv3 88
MYM H45 -8.716 1.285 -2.706 ETKDGv3 89
MYM H46 -8.062 2.185 -0.721 ETKDGv3 90
MYM H47 -6.387 1.897 -1.168 ETKDGv3 91
MYM H48 -9.389 0.709 0.701 ETKDGv3 92
MYM H49 -8.786 -0.912 1.203 ETKDGv3 93
MYM H51 -10.855 -1.650 -1.931 ETKDGv3 94
MYM H52 -11.174 -1.203 -0.146 ETKDGv3 95
#