data_MYQ
#
_chem_comp.id MYQ
_chem_comp.name (S)-(1,2-DICARBOXYETHYLTHIO)GOLD
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C4 H5 Au O4 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms MYOCRISIN
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2005-09-07
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 346.112
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code MYQ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag Y
_chem_comp.pdbx_model_coordinates_db_code 2ATO
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MYQ S S S 0 1 N N N N N N 29.154 55.978 64.476 ? ? ? S MYQ 1
MYQ O1 O1 O 0 1 N N N N N N 32.426 55.729 64.162 ? ? ? O1 MYQ 2
MYQ O2 O2 O 0 1 N N N N N N 32.557 53.640 64.844 ? ? ? O2 MYQ 3
MYQ O3 O3 O 0 1 N N N N N N 30.288 51.147 63.535 ? ? ? O3 MYQ 4
MYQ O4 O4 O 0 1 N N N N N N 31.022 52.820 62.235 ? ? ? O4 MYQ 5
MYQ C1 C1 C 0 1 N N N N N N 31.805 54.658 64.559 ? ? ? C1 MYQ 6
MYQ C2 C2 C 0 1 N N S N N N 30.328 54.639 64.731 ? ? ? C2 MYQ 7
MYQ C3 C3 C 0 1 N N N N N N 29.669 53.329 64.279 ? ? ? C3 MYQ 8
MYQ C4 C4 C 0 1 N N N N N N 30.371 52.385 63.310 ? ? ? C4 MYQ 9
MYQ AU AU AU 0 0 N N N N N N 30.253 58.189 64.077 ? ? ? AU MYQ 10
MYQ HO2 HO2 H 0 1 N N N N N N 33.468 53.870 64.705 ? ? ? HO2 MYQ 11
MYQ HO3 HO3 H 0 1 N N N N N N 30.739 50.669 62.849 ? ? ? HO3 MYQ 12
MYQ H2 H2 H 0 1 N N N N N N 30.500 54.826 65.801 ? ? ? H2 MYQ 13
MYQ H31 1H3 H 0 1 N N N N N N 28.800 53.676 63.700 ? ? ? H31 MYQ 14
MYQ H32 2H3 H 0 1 N N N N N N 29.504 52.746 65.197 ? ? ? H32 MYQ 15
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MYQ S C2 SING N N 1
MYQ S AU SING N N 2
MYQ O1 C1 DOUB N N 3
MYQ O2 C1 SING N N 4
MYQ O2 HO2 SING N N 5
MYQ O3 C4 SING N N 6
MYQ O3 HO3 SING N N 7
MYQ O4 C4 DOUB N N 8
MYQ C1 C2 SING N N 9
MYQ C2 C3 SING N N 10
MYQ C2 H2 SING N N 11
MYQ C3 C4 SING N N 12
MYQ C3 H31 SING N N 13
MYQ C3 H32 SING N N 14
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MYQ SMILES ACDLabs 10.04 O=C(O)CC(S[Au])C(=O)O
MYQ SMILES_CANONICAL CACTVS 3.341 OC(=O)C[C@H](S[Au])C(O)=O
MYQ SMILES CACTVS 3.341 OC(=O)C[CH](S[Au])C(O)=O
MYQ SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C([C@@H](C(=O)O)S[Au])C(=O)O
MYQ SMILES "OpenEye OEToolkits" 1.5.0 C(C(C(=O)O)S[Au])C(=O)O
MYQ InChI InChI 1.03 InChI=1S/C4H6O4S.Au/c5-3(6)1-2(9)4(7)8;/h2,9H,1H2,(H,5,6)(H,7,8);/q;+1/p-1/t2-;/m0./s1
MYQ InChIKey InChI 1.03 XJHSMFDIQHVMCY-DKWTVANSSA-M
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MYQ "SYSTEMATIC NAME" ACDLabs 10.04 "gold(1+) (1S)-1,2-dicarboxyethanethiolate"
MYQ "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2S)-1,4-dihydroxy-1,4-dioxo-butan-2-yl]sulfanylgold"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MYQ 'Create component' 2005-09-07 RCSB
MYQ 'Modify descriptor' 2011-06-04 RCSB
MYQ 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id MYQ
_pdbx_chem_comp_synonyms.name MYOCRISIN
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id MYQ
_pdbe_chem_comp_synonyms.name MYOCRISIN
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
MYQ S S 7.702 -1.500 1
MYQ O1 O 10.301 0.000 2
MYQ O2 O 9.002 2.250 3
MYQ O3 O 3.805 0.750 4
MYQ O4 O 5.104 -1.500 5
MYQ C1 C 9.002 0.750 6
MYQ C2 C 7.702 0.000 7
MYQ C3 C 6.404 0.750 8
MYQ C4 C 5.104 0.000 9
MYQ AU Au 6.404 -2.250 10
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
MYQ S C2 SINGLE NONE 1
MYQ S AU SINGLE NONE 2
MYQ O1 C1 DOUBLE NONE 3
MYQ O2 C1 SINGLE NONE 4
MYQ O3 C4 SINGLE NONE 5
MYQ O4 C4 DOUBLE NONE 6
MYQ C1 C2 SINGLE NONE 7
MYQ C2 C3 SINGLE BEGINWEDGE 8
MYQ C3 C4 SINGLE NONE 9
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id MYQ
_pdbe_chem_comp_rdkit_properties.exactmw 345.957
_pdbe_chem_comp_rdkit_properties.amw 346.114
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 4
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 10
_pdbe_chem_comp_rdkit_properties.NumAtoms 15
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 6
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 79.690
_pdbe_chem_comp_rdkit_properties.tpsa 74.600
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.109
_pdbe_chem_comp_rdkit_properties.CrippenMR 31.268
_pdbe_chem_comp_rdkit_properties.chi0v 7.326
_pdbe_chem_comp_rdkit_properties.chi1v 5.202
_pdbe_chem_comp_rdkit_properties.chi2v 2.181
_pdbe_chem_comp_rdkit_properties.chi3v 2.181
_pdbe_chem_comp_rdkit_properties.chi4v 1.222
_pdbe_chem_comp_rdkit_properties.chi0n 9.343
_pdbe_chem_comp_rdkit_properties.chi1n 4.210
_pdbe_chem_comp_rdkit_properties.chi2n 0.463
_pdbe_chem_comp_rdkit_properties.chi3n 0.463
_pdbe_chem_comp_rdkit_properties.chi4n 0.184
_pdbe_chem_comp_rdkit_properties.hallKierAlpha 0.030
_pdbe_chem_comp_rdkit_properties.kappa1 4.155
_pdbe_chem_comp_rdkit_properties.kappa2 4.786
_pdbe_chem_comp_rdkit_properties.kappa3 3.945
_pdbe_chem_comp_rdkit_properties.Phi 1.989
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
MYQ UniChem PDBe MYQ
MYQ UniChem ChEBI 38727
MYQ UniChem PubChem 139031359
MYQ UniChem PubChem 9547902
MYQ UniChem ACTor 33796-26-8
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
MYQ S -0.323 1.667 -1.010 ETKDGv3 1
MYQ O1 -2.337 0.380 1.014 ETKDGv3 2
MYQ O2 -2.682 -1.251 -0.565 ETKDGv3 3
MYQ O3 2.721 0.791 0.318 ETKDGv3 4
MYQ O4 2.398 -1.333 -0.495 ETKDGv3 5
MYQ C1 -1.883 -0.290 0.047 ETKDGv3 6
MYQ C2 -0.485 -0.060 -0.445 ETKDGv3 7
MYQ C3 0.535 -0.376 0.660 ETKDGv3 8
MYQ C4 1.938 -0.344 0.136 ETKDGv3 9
MYQ AU -0.390 3.165 -0.623 ETKDGv3 10
MYQ HO2 -3.628 -1.421 -0.245 ETKDGv3 11
MYQ HO3 3.667 0.832 -0.042 ETKDGv3 12
MYQ H2 -0.301 -0.727 -1.315 ETKDGv3 13
MYQ H31 0.335 -1.389 1.073 ETKDGv3 14
MYQ H32 0.435 0.354 1.493 ETKDGv3 15
#