data_MZD
#
_chem_comp.id MZD
_chem_comp.name
"S-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] (5beta,7alpha,8alpha,10alpha,11alpha,13alpha)-7-hydroxy-11,16-epoxykaurane-18-thioate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C31 H51 N2 O10 P S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-04-24
_chem_comp.pdbx_modified_date 2019-07-19
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 674.783
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code MZD
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6OMQ
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MZD C10 C1 C 0 1 N N N N N N 45.378 48.776 35.140 9.092 2.160 -0.290 C10 MZD 1
MZD C13 C2 C 0 1 N N N N N N 42.966 47.801 32.250 5.592 0.934 -1.429 C13 MZD 2
MZD C15 C3 C 0 1 N N R N N N 42.280 49.213 30.163 4.931 -1.491 -1.714 C15 MZD 3
MZD C17 C4 C 0 1 N N N N N N 42.423 47.961 29.241 3.591 -1.162 -1.111 C17 MZD 4
MZD C20 C5 C 0 1 N N N N N N 43.941 46.047 26.924 -0.389 -1.961 -0.707 C20 MZD 5
MZD C22 C6 C 0 1 N N N N N N 46.123 46.862 26.240 -2.683 -1.715 0.076 C22 MZD 6
MZD C24 C7 C 0 1 N N N N N N 46.751 47.388 23.861 -5.082 -1.704 0.703 C24 MZD 7
MZD C26 C8 C 0 1 N N N N N N 46.884 44.924 23.466 -7.376 -1.459 1.486 C26 MZD 8
MZD O35 O1 O 0 1 N N N N N N 51.401 41.494 20.149 -8.933 1.592 -2.658 O35 MZD 9
MZD P34 P1 P 0 1 N N N N N N 50.347 40.448 20.226 -10.106 1.955 -1.617 P34 MZD 10
MZD O36 O2 O 0 1 N N N N N N 50.351 39.521 21.388 -10.526 3.498 -1.799 O36 MZD 11
MZD O37 O3 O 0 1 N N N N N N 49.709 39.995 18.962 -11.279 1.090 -1.873 O37 MZD 12
MZD O33 O4 O 0 1 N N N N N N 49.108 41.463 20.701 -9.582 1.716 -0.113 O33 MZD 13
MZD C32 C9 C 0 1 N N N N N N 49.142 42.187 21.907 -9.232 0.426 0.393 C32 MZD 14
MZD C29 C10 C 0 1 N N N N N N 48.019 43.251 21.857 -8.776 0.556 1.848 C29 MZD 15
MZD C30 C11 C 0 1 N N N N N N 48.437 44.438 20.958 -7.559 1.480 1.921 C30 MZD 16
MZD C31 C12 C 0 1 N N N N N N 46.719 42.627 21.305 -9.913 1.143 2.688 C31 MZD 17
MZD C27 C13 C 0 1 N N R N N N 47.845 43.724 23.335 -8.402 -0.825 2.390 C27 MZD 18
MZD O28 O5 O 0 1 N N N N N N 49.145 44.102 23.882 -9.568 -1.650 2.439 O28 MZD 19
MZD O38 O6 O 0 1 N N N N N N 45.666 44.762 23.331 -7.697 -2.364 0.746 O38 MZD 20
MZD N25 N1 N 0 1 N N N N N N 47.486 46.130 23.692 -6.102 -1.019 1.500 N25 MZD 21
MZD C23 C14 C 0 1 N N N N N N 46.987 47.780 25.315 -3.733 -1.010 0.896 C23 MZD 22
MZD O39 O7 O 0 1 N N N N N N 46.640 46.062 27.026 -2.985 -2.678 -0.597 O39 MZD 23
MZD N21 N2 N 0 1 N N N N N N 44.803 46.855 26.043 -1.409 -1.275 0.090 N21 MZD 24
MZD C19 C15 C 0 1 N N N N N N 42.510 46.605 26.757 0.961 -1.266 -0.515 C19 MZD 25
MZD S18 S1 S 0 1 N N N N N N 42.420 48.325 27.467 2.221 -2.113 -1.500 S18 MZD 26
MZD O40 O8 O 0 1 N N N N N N 42.471 46.813 29.680 3.481 -0.222 -0.351 O40 MZD 27
MZD C16 C16 C 0 1 N N N N N N 40.805 49.270 30.596 4.769 -1.384 -3.251 C16 MZD 28
MZD C41 C17 C 0 1 N N N N N N 42.536 50.508 29.411 5.288 -2.947 -1.422 C41 MZD 29
MZD C42 C18 C 0 1 N N N N N N 44.062 50.759 29.207 5.843 -3.141 -0.018 C42 MZD 30
MZD C43 C19 C 0 1 N N N N N N 44.768 50.787 30.545 7.048 -2.230 0.201 C43 MZD 31
MZD C44 C20 C 0 1 N N R N N N 44.741 49.369 31.242 6.611 -0.760 0.097 C44 MZD 32
MZD C45 C21 C 0 1 N N N N N N 45.449 48.272 30.403 5.600 -0.472 1.200 C45 MZD 33
MZD C07 C22 C 0 1 N N S N N N 45.360 49.531 32.713 7.847 0.116 0.232 C07 MZD 34
MZD C14 C23 C 0 1 N N S N N N 43.212 49.089 31.488 6.017 -0.528 -1.291 C14 MZD 35
MZD C11 C24 C 0 1 N N R N N N 43.527 47.965 33.698 6.858 1.803 -1.405 C11 MZD 36
MZD O12 O9 O 0 1 N N N N N N 43.443 46.657 34.413 6.486 3.180 -1.500 O12 MZD 37
MZD C08 C25 C 0 1 N N R N N N 44.997 48.338 33.698 7.652 1.573 -0.147 C08 MZD 38
MZD C02 C26 C 0 1 N N S N N N 46.874 49.039 34.988 9.583 2.007 1.179 C02 MZD 39
MZD C01 C27 C 0 1 N N N N N N 47.527 49.018 36.364 10.749 2.936 1.531 C01 MZD 40
MZD O06 O10 O 0 1 N N N N N N 47.148 50.325 34.230 9.906 0.601 1.331 O06 MZD 41
MZD C05 C28 C 0 1 N N S N N N 46.901 49.884 32.848 8.614 -0.052 1.539 C05 MZD 42
MZD C04 C29 C 0 1 N N N N N N 47.828 48.683 32.785 8.054 0.841 2.671 C04 MZD 43
MZD C03 C30 C 0 1 N N S N N N 47.283 47.900 33.982 8.318 2.251 2.057 C03 MZD 44
MZD C09 C31 C 0 1 N N N N N N 45.968 47.166 33.585 7.146 2.415 1.041 C09 MZD 45
MZD H1 H1 H 0 1 N N N N N N 44.838 49.686 35.440 9.681 1.560 -0.980 H1 MZD 46
MZD H2 H2 H 0 1 N N N N N N 45.182 47.976 35.869 9.049 3.204 -0.595 H2 MZD 47
MZD H3 H3 H 0 1 N N N N N N 41.886 47.595 32.292 5.086 1.092 -2.384 H3 MZD 48
MZD H4 H4 H 0 1 N N N N N N 43.478 46.968 31.746 4.930 1.237 -0.626 H4 MZD 49
MZD H5 H5 H 0 1 N N N N N N 43.975 44.989 26.625 -0.313 -2.999 -0.385 H5 MZD 50
MZD H6 H6 H 0 1 N N N N N N 44.268 46.143 27.970 -0.668 -1.927 -1.761 H6 MZD 51
MZD H7 H7 H 0 1 N N N N N N 47.142 48.160 23.182 -5.006 -2.743 1.025 H7 MZD 52
MZD H8 H8 H 0 1 N N N N N N 45.678 47.240 23.668 -5.361 -1.671 -0.350 H8 MZD 53
MZD H9 H9 H 0 1 N N N N N N 51.531 41.747 19.243 -8.131 2.121 -2.548 H9 MZD 54
MZD H10 H10 H 0 1 N N N N N N 49.916 38.711 21.149 -10.853 3.715 -2.683 H10 MZD 55
MZD H11 H11 H 0 1 N N N N N N 48.975 41.507 22.755 -10.100 -0.232 0.341 H11 MZD 56
MZD H12 H12 H 0 1 N N N N N N 50.119 42.680 22.019 -8.423 0.008 -0.205 H12 MZD 57
MZD H13 H13 H 0 1 N N N N N N 49.363 44.886 21.348 -7.855 2.493 1.652 H13 MZD 58
MZD H14 H14 H 0 1 N N N N N N 48.607 44.079 19.932 -7.159 1.474 2.934 H14 MZD 59
MZD H15 H15 H 0 1 N N N N N N 47.638 45.194 20.954 -6.795 1.129 1.227 H15 MZD 60
MZD H16 H16 H 0 1 N N N N N N 46.418 41.782 21.942 -10.760 0.458 2.682 H16 MZD 61
MZD H17 H17 H 0 1 N N N N N N 45.922 43.385 21.301 -9.570 1.288 3.712 H17 MZD 62
MZD H18 H18 H 0 1 N N N N N N 46.891 42.270 20.279 -10.217 2.102 2.268 H18 MZD 63
MZD H19 H19 H 0 1 N N N N N N 47.433 42.886 23.916 -7.988 -0.721 3.393 H19 MZD 64
MZD H20 H20 H 0 1 N N N N N N 49.039 44.390 24.781 -9.990 -1.785 1.580 H20 MZD 65
MZD H21 H21 H 0 1 N N N N N N 48.484 46.156 23.745 -5.861 -0.249 2.038 H21 MZD 66
MZD H22 H22 H 0 1 N N N N N N 48.051 47.654 25.562 -3.454 -1.044 1.949 H22 MZD 67
MZD H23 H23 H 0 1 N N N N N N 46.697 48.831 25.465 -3.809 0.028 0.573 H23 MZD 68
MZD H24 H24 H 0 1 N N N N N N 44.402 47.394 25.303 -1.168 -0.505 0.628 H24 MZD 69
MZD H25 H25 H 0 1 N N N N N N 42.252 46.637 25.688 0.884 -0.228 -0.837 H25 MZD 70
MZD H26 H26 H 0 1 N N N N N N 41.799 45.953 27.286 1.239 -1.300 0.539 H26 MZD 71
MZD H27 H27 H 0 1 N N N N N N 40.648 50.139 31.252 5.711 -1.642 -3.735 H27 MZD 72
MZD H28 H28 H 0 1 N N N N N N 40.165 49.362 29.706 3.990 -2.070 -3.583 H28 MZD 73
MZD H29 H29 H 0 1 N N N N N N 40.547 48.349 31.140 4.492 -0.364 -3.517 H29 MZD 74
MZD H30 H30 H 0 1 N N N N N N 42.110 51.344 29.984 4.387 -3.561 -1.541 H30 MZD 75
MZD H31 H31 H 0 1 N N N N N N 42.048 50.452 28.427 6.026 -3.287 -2.156 H31 MZD 76
MZD H32 H32 H 0 1 N N N N N N 44.484 49.952 28.590 5.075 -2.969 0.729 H32 MZD 77
MZD H33 H33 H 0 1 N N N N N N 44.207 51.724 28.699 6.176 -4.185 0.085 H33 MZD 78
MZD H34 H34 H 0 1 N N N N N N 45.814 51.090 30.391 7.469 -2.411 1.189 H34 MZD 79
MZD H35 H35 H 0 1 N N N N N N 44.267 51.516 31.199 7.802 -2.431 -0.560 H35 MZD 80
MZD H36 H36 H 0 1 N N N N N N 45.398 47.312 30.937 6.061 -0.654 2.171 H36 MZD 81
MZD H37 H37 H 0 1 N N N N N N 44.949 48.176 29.428 5.281 0.568 1.138 H37 MZD 82
MZD H38 H38 H 0 1 N N N N N N 46.502 48.551 30.249 4.735 -1.125 1.080 H38 MZD 83
MZD H39 H39 H 0 1 N N N N N N 44.839 50.404 33.134 8.552 -0.282 -0.552 H39 MZD 84
MZD H40 H40 H 0 1 N N N N N N 42.871 49.900 32.149 6.862 -0.666 -2.009 H40 MZD 85
MZD H41 H41 H 0 1 N N N N N N 42.944 48.731 34.231 7.478 1.545 -2.269 H41 MZD 86
MZD H42 H42 H 0 1 N N N N N N 43.784 46.755 35.294 6.001 3.402 -2.306 H42 MZD 87
MZD H43 H43 H 0 1 N N N N N N 47.154 49.864 36.960 10.447 3.972 1.378 H43 MZD 88
MZD H44 H44 H 0 1 N N N N N N 47.281 48.074 36.872 11.028 2.789 2.574 H44 MZD 89
MZD H45 H45 H 0 1 N N N N N N 48.618 49.101 36.253 11.601 2.707 0.891 H45 MZD 90
MZD H46 H46 H 0 1 N N N N N N 47.186 50.650 32.112 8.736 -1.093 1.836 H46 MZD 91
MZD H47 H47 H 0 1 N N N N N N 47.719 48.126 31.843 7.009 0.683 2.893 H47 MZD 92
MZD H48 H48 H 0 1 N N N N N N 48.882 48.967 32.923 8.645 0.713 3.591 H48 MZD 93
MZD H49 H49 H 0 1 N N N N N N 48.027 47.216 34.415 8.414 3.058 2.780 H49 MZD 94
MZD H50 H50 H 0 1 N N N N N N 45.720 46.356 34.286 7.040 3.469 0.756 H50 MZD 95
MZD H51 H51 H 0 1 N N N N N N 46.013 46.764 32.562 6.209 2.050 1.447 H51 MZD 96
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MZD O37 P34 DOUB N N 1
MZD O35 P34 SING N N 2
MZD P34 O33 SING N N 3
MZD P34 O36 SING N N 4
MZD O33 C32 SING N N 5
MZD C30 C29 SING N N 6
MZD C31 C29 SING N N 7
MZD C29 C32 SING N N 8
MZD C29 C27 SING N N 9
MZD O38 C26 DOUB N N 10
MZD C27 C26 SING N N 11
MZD C27 O28 SING N N 12
MZD C26 N25 SING N N 13
MZD N25 C24 SING N N 14
MZD C24 C23 SING N N 15
MZD C23 C22 SING N N 16
MZD N21 C22 SING N N 17
MZD N21 C20 SING N N 18
MZD C22 O39 DOUB N N 19
MZD C19 C20 SING N N 20
MZD C19 S18 SING N N 21
MZD S18 C17 SING N N 22
MZD C42 C41 SING N N 23
MZD C42 C43 SING N N 24
MZD C17 O40 DOUB N N 25
MZD C17 C15 SING N N 26
MZD C41 C15 SING N N 27
MZD C15 C16 SING N N 28
MZD C15 C14 SING N N 29
MZD C45 C44 SING N N 30
MZD C43 C44 SING N N 31
MZD C44 C14 SING N N 32
MZD C44 C07 SING N N 33
MZD C14 C13 SING N N 34
MZD C13 C11 SING N N 35
MZD C07 C05 SING N N 36
MZD C07 C08 SING N N 37
MZD C04 C05 SING N N 38
MZD C04 C03 SING N N 39
MZD C05 O06 SING N N 40
MZD C09 C08 SING N N 41
MZD C09 C03 SING N N 42
MZD C11 C08 SING N N 43
MZD C11 O12 SING N N 44
MZD C08 C10 SING N N 45
MZD C03 C02 SING N N 46
MZD O06 C02 SING N N 47
MZD C02 C10 SING N N 48
MZD C02 C01 SING N N 49
MZD C10 H1 SING N N 50
MZD C10 H2 SING N N 51
MZD C13 H3 SING N N 52
MZD C13 H4 SING N N 53
MZD C20 H5 SING N N 54
MZD C20 H6 SING N N 55
MZD C24 H7 SING N N 56
MZD C24 H8 SING N N 57
MZD O35 H9 SING N N 58
MZD O36 H10 SING N N 59
MZD C32 H11 SING N N 60
MZD C32 H12 SING N N 61
MZD C30 H13 SING N N 62
MZD C30 H14 SING N N 63
MZD C30 H15 SING N N 64
MZD C31 H16 SING N N 65
MZD C31 H17 SING N N 66
MZD C31 H18 SING N N 67
MZD C27 H19 SING N N 68
MZD O28 H20 SING N N 69
MZD N25 H21 SING N N 70
MZD C23 H22 SING N N 71
MZD C23 H23 SING N N 72
MZD N21 H24 SING N N 73
MZD C19 H25 SING N N 74
MZD C19 H26 SING N N 75
MZD C16 H27 SING N N 76
MZD C16 H28 SING N N 77
MZD C16 H29 SING N N 78
MZD C41 H30 SING N N 79
MZD C41 H31 SING N N 80
MZD C42 H32 SING N N 81
MZD C42 H33 SING N N 82
MZD C43 H34 SING N N 83
MZD C43 H35 SING N N 84
MZD C45 H36 SING N N 85
MZD C45 H37 SING N N 86
MZD C45 H38 SING N N 87
MZD C07 H39 SING N N 88
MZD C14 H40 SING N N 89
MZD C11 H41 SING N N 90
MZD O12 H42 SING N N 91
MZD C01 H43 SING N N 92
MZD C01 H44 SING N N 93
MZD C01 H45 SING N N 94
MZD C05 H46 SING N N 95
MZD C04 H47 SING N N 96
MZD C04 H48 SING N N 97
MZD C03 H49 SING N N 98
MZD C09 H50 SING N N 99
MZD C09 H51 SING N N 100
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MZD SMILES ACDLabs 12.01 C3C15C(C2(CCCC(C)(C2CC1O)C(=O)SCCNC(=O)CCNC(C(C(COP(O)(O)=O)(C)C)O)=O)C)C4OC3(C)C(C4)C5
MZD InChI InChI 1.03 InChI=1S/C31H51N2O10PS/c1-27(2,17-42-44(39,40)41)24(36)25(37)33-10-7-22(35)32-11-12-45-26(38)29(4)9-6-8-28(3)20(29)14-21(34)31-15-18-13-19(23(28)31)43-30(18,5)16-31/h18-21,23-24,34,36H,6-17H2,1-5H3,(H,32,35)(H,33,37)(H2,39,40,41)/t18-,19+,20+,21-,23+,24+,28-,29-,30+,31+/m1/s1
MZD InChIKey InChI 1.03 WNJOABVUVJTUCG-HDNPFTGKSA-N
MZD SMILES_CANONICAL CACTVS 3.385 CC(C)(CO[P](O)(O)=O)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)[C@]1(C)CCC[C@]2(C)[C@@H]1C[C@@H](O)[C@]34C[C@H]5C[C@H](O[C@@]5(C)C3)[C@@H]24
MZD SMILES CACTVS 3.385 CC(C)(CO[P](O)(O)=O)[CH](O)C(=O)NCCC(=O)NCCSC(=O)[C]1(C)CCC[C]2(C)[CH]1C[CH](O)[C]34C[CH]5C[CH](O[C]5(C)C3)[CH]24
MZD SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 C[C@@]12CCC[C@@]([C@H]1C[C@H]([C@]34[C@H]2[C@@H]5C[C@H](C3)[C@](C4)(O5)C)O)(C)C(=O)SCCNC(=O)CCNC(=O)[C@@H](C(C)(C)COP(=O)(O)O)O
MZD SMILES "OpenEye OEToolkits" 2.0.7 CC12CCCC(C1CC(C34C2C5CC(C3)C(C4)(O5)C)O)(C)C(=O)SCCNC(=O)CCNC(=O)C(C(C)(C)COP(=O)(O)O)O
#
_pdbx_chem_comp_identifier.comp_id MZD
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program ACDLabs
_pdbx_chem_comp_identifier.program_version 12.01
_pdbx_chem_comp_identifier.identifier
"S-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] (5beta,7alpha,8alpha,10alpha,11alpha,13alpha)-7-hydroxy-11,16-epoxykaurane-18-thioate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MZD 'Create component' 2019-04-24 RCSB
MZD 'Initial release' 2019-07-24 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
MZD C10 C 9.791 -0.016 1
MZD C13 C 5.895 0.589 2
MZD C15 C 3.911 -1.068 3
MZD C17 C 3.871 0.493 4
MZD C20 C -0.011 1.193 5
MZD C22 C -2.595 1.204 6
MZD C24 C -5.189 1.216 7
MZD C26 C -7.785 1.226 8
MZD O35 O -15.028 1.799 9
MZD P34 P -14.282 0.497 10
MZD O36 O -13.537 -0.804 11
MZD O37 O -15.584 -0.249 12
MZD O33 O -12.981 1.243 13
MZD C32 C -11.685 0.489 14
MZD C29 C -10.383 1.234 15
MZD C30 C -9.629 2.531 16
MZD C31 C -11.129 2.536 17
MZD C27 C -9.087 0.480 18
MZD O28 O -9.092 -1.020 19
MZD O38 O -7.780 2.726 20
MZD N25 N -6.490 0.472 21
MZD C23 C -3.895 0.461 22
MZD O39 O -2.587 2.705 23
MZD N21 N -1.304 0.449 24
MZD C19 C 1.284 0.447 25
MZD S18 S 2.561 1.207 26
MZD O40 O 5.128 1.306 27
MZD C16 C 2.431 -0.817 28
MZD C41 C 3.381 -2.471 29
MZD C42 C 4.337 -3.621 30
MZD C43 C 5.817 -3.371 31
MZD C44 C 6.341 -1.966 32
MZD C45 C 7.302 -3.117 33
MZD C07 C 7.810 -1.701 34
MZD C14 C 5.393 -0.815 35
MZD C11 C 7.356 0.833 36
MZD O12 O 7.868 2.244 37
MZD C08 C 8.315 -0.283 38
MZD C02 C 10.747 -1.163 39
MZD C01 C 12.156 -1.674 40
MZD O06 O 10.233 -2.549 41
MZD C05 C 8.777 -2.820 42
MZD C04 C 9.282 -1.430 43
MZD C03 C 11.249 0.248 44
MZD C09 C 8.816 1.127 45
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
MZD O37 P34 DOUBLE NONE 1
MZD O35 P34 SINGLE NONE 2
MZD P34 O33 SINGLE NONE 3
MZD P34 O36 SINGLE NONE 4
MZD O33 C32 SINGLE NONE 5
MZD C30 C29 SINGLE NONE 6
MZD C31 C29 SINGLE NONE 7
MZD C29 C32 SINGLE NONE 8
MZD C29 C27 SINGLE NONE 9
MZD O38 C26 DOUBLE NONE 10
MZD C27 C26 SINGLE NONE 11
MZD C27 O28 SINGLE BEGINDASH 12
MZD C26 N25 SINGLE NONE 13
MZD N25 C24 SINGLE NONE 14
MZD C24 C23 SINGLE NONE 15
MZD C23 C22 SINGLE NONE 16
MZD N21 C22 SINGLE NONE 17
MZD N21 C20 SINGLE NONE 18
MZD C22 O39 DOUBLE NONE 19
MZD C19 C20 SINGLE NONE 20
MZD C19 S18 SINGLE NONE 21
MZD S18 C17 SINGLE NONE 22
MZD C42 C41 SINGLE NONE 23
MZD C42 C43 SINGLE NONE 24
MZD C17 O40 DOUBLE NONE 25
MZD C17 C15 SINGLE NONE 26
MZD C41 C15 SINGLE NONE 27
MZD C15 C16 SINGLE BEGINDASH 28
MZD C15 C14 SINGLE NONE 29
MZD C44 C45 SINGLE BEGINWEDGE 30
MZD C43 C44 SINGLE NONE 31
MZD C44 C14 SINGLE NONE 32
MZD C44 C07 SINGLE NONE 33
MZD C14 C13 SINGLE NONE 34
MZD C13 C11 SINGLE NONE 35
MZD C07 C05 SINGLE NONE 36
MZD C07 C08 SINGLE NONE 37
MZD C04 C05 SINGLE NONE 38
MZD C04 C03 SINGLE NONE 39
MZD C05 O06 SINGLE NONE 40
MZD C08 C09 SINGLE BEGINWEDGE 41
MZD C09 C03 SINGLE NONE 42
MZD C11 C08 SINGLE NONE 43
MZD C11 O12 SINGLE BEGINWEDGE 44
MZD C08 C10 SINGLE NONE 45
MZD C03 C02 SINGLE NONE 46
MZD O06 C02 SINGLE NONE 47
MZD C02 C10 SINGLE NONE 48
MZD C02 C01 SINGLE BEGINDASH 49
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
MZD MurckoScaffold S1 scaffold 'C1CC[C@H]2CC[C@@]34CC5O[C@@H](C[C@@H]5C3)[C@H]4C2C1' InChI=1S/C16H24O/c1-2-4-12-10(3-1)5-6-16-8-11-7-13(15(12)16)17-14(11)9-16/h10-15H,1-9H2/t10-,11+,12?,13-,14?,15+,16-/m0/s1 MGVOQROPPBEEKU-OMMGMKPRSA-N
MZD amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
MZD cyclohexane F2 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
MZD cyclopentane F3 fragment C1CCCC1 InChI=1S/C5H10/c1-2-4-5-3-1/h1-5H2 RGSFGYAAUTVSQA-UHFFFAOYSA-N
MZD phosphate F4 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
MZD C10 S1 1
MZD C13 S1 1
MZD C15 S1 1
MZD C41 S1 1
MZD C42 S1 1
MZD C43 S1 1
MZD C44 S1 1
MZD C07 S1 1
MZD C14 S1 1
MZD C11 S1 1
MZD C08 S1 1
MZD C02 S1 1
MZD O06 S1 1
MZD C05 S1 1
MZD C04 S1 1
MZD C03 S1 1
MZD C09 S1 1
MZD N25 F1 1
MZD C26 F1 1
MZD O38 F1 1
MZD C27 F1 1
MZD N21 F1 2
MZD C22 F1 2
MZD O39 F1 2
MZD C23 F1 2
MZD C13 F2 1
MZD C14 F2 1
MZD C44 F2 1
MZD C07 F2 1
MZD C08 F2 1
MZD C11 F2 1
MZD C15 F2 2
MZD C41 F2 2
MZD C42 F2 2
MZD C43 F2 2
MZD C44 F2 2
MZD C14 F2 2
MZD C07 F2 3
MZD C05 F2 3
MZD C04 F2 3
MZD C03 F2 3
MZD C09 F2 3
MZD C08 F2 3
MZD C10 F3 1
MZD C08 F3 1
MZD C09 F3 1
MZD C03 F3 1
MZD C02 F3 1
MZD O35 F4 1
MZD P34 F4 1
MZD O37 F4 1
MZD O33 F4 1
MZD O36 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id MZD
_pdbe_chem_comp_rdkit_properties.exactmw 674.300
_pdbe_chem_comp_rdkit_properties.amw 674.794
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 12
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 21
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 11
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 45
_pdbe_chem_comp_rdkit_properties.NumAtoms 96
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 14
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.903
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 6
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 6
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 1
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 4
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 10
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 341.436
_pdbe_chem_comp_rdkit_properties.tpsa 191.720
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.516
_pdbe_chem_comp_rdkit_properties.CrippenMR 166.606
_pdbe_chem_comp_rdkit_properties.chi0v 23.043
_pdbe_chem_comp_rdkit_properties.chi1v 13.693
_pdbe_chem_comp_rdkit_properties.chi2v 7.146
_pdbe_chem_comp_rdkit_properties.chi3v 7.146
_pdbe_chem_comp_rdkit_properties.chi4v 5.064
_pdbe_chem_comp_rdkit_properties.chi0n 72.332
_pdbe_chem_comp_rdkit_properties.chi1n 36.443
_pdbe_chem_comp_rdkit_properties.chi2n 6.147
_pdbe_chem_comp_rdkit_properties.chi3n 6.147
_pdbe_chem_comp_rdkit_properties.chi4n 4.325
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.050
_pdbe_chem_comp_rdkit_properties.kappa1 8.280
_pdbe_chem_comp_rdkit_properties.kappa2 12.126
_pdbe_chem_comp_rdkit_properties.kappa3 6.297
_pdbe_chem_comp_rdkit_properties.Phi 2.231
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
MZD UniChem PDBe MZD
MZD UniChem PubChem 138753621
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
MZD C10 -5.749 1.019 1.843 ETKDGv3 1
MZD C13 -3.722 0.399 -1.435 ETKDGv3 2
MZD C15 -1.364 1.350 -2.100 ETKDGv3 3
MZD C17 -1.199 0.046 -2.903 ETKDGv3 4
MZD C20 1.355 -0.985 -4.675 ETKDGv3 5
MZD C22 3.739 -1.629 -4.186 ETKDGv3 6
MZD C24 5.025 -0.094 -2.667 ETKDGv3 7
MZD C26 4.445 -1.562 -0.675 ETKDGv3 8
MZD O35 8.164 0.303 2.000 ETKDGv3 9
MZD P34 6.972 -0.659 2.717 ETKDGv3 10
MZD O36 6.700 -0.113 4.296 ETKDGv3 11
MZD O37 7.452 -2.093 2.755 ETKDGv3 12
MZD O33 5.542 -0.546 1.796 ETKDGv3 13
MZD C32 4.522 -1.264 2.453 ETKDGv3 14
MZD C29 3.218 -1.266 1.606 ETKDGv3 15
MZD C30 2.798 0.196 1.322 ETKDGv3 16
MZD C31 2.108 -1.927 2.456 ETKDGv3 17
MZD C27 3.415 -2.111 0.292 ETKDGv3 18
MZD O28 2.202 -2.373 -0.374 ETKDGv3 19
MZD O38 5.605 -2.059 -0.676 ETKDGv3 20
MZD N25 4.125 -0.501 -1.588 ETKDGv3 21
MZD C23 5.105 -1.166 -3.765 ETKDGv3 22
MZD O39 3.422 -2.841 -4.040 ETKDGv3 23
MZD N21 2.787 -0.693 -4.704 ETKDGv3 24
MZD C19 0.539 0.280 -4.943 ETKDGv3 25
MZD S18 -1.250 -0.018 -4.710 ETKDGv3 26
MZD O40 -1.039 -1.013 -2.319 ETKDGv3 27
MZD C16 -1.757 2.505 -3.068 ETKDGv3 28
MZD C41 0.010 1.718 -1.462 ETKDGv3 29
MZD C42 -0.138 2.593 -0.214 ETKDGv3 30
MZD C43 -0.916 1.904 0.926 ETKDGv3 31
MZD C44 -2.019 0.874 0.471 ETKDGv3 32
MZD C45 -1.389 -0.539 0.561 ETKDGv3 33
MZD C07 -3.279 1.021 1.426 ETKDGv3 34
MZD C14 -2.494 1.234 -0.990 ETKDGv3 35
MZD C11 -4.948 0.715 -0.565 ETKDGv3 36
MZD O12 -6.057 -0.024 -1.014 ETKDGv3 37
MZD C08 -4.667 0.420 0.927 ETKDGv3 38
MZD C02 -5.312 0.442 3.197 ETKDGv3 39
MZD C01 -6.431 0.433 4.239 ETKDGv3 40
MZD O06 -4.208 1.222 3.640 ETKDGv3 41
MZD C05 -3.109 0.653 2.960 ETKDGv3 42
MZD C04 -3.307 -0.831 3.252 ETKDGv3 43
MZD C03 -4.759 -0.972 2.864 ETKDGv3 44
MZD C09 -4.812 -1.059 1.331 ETKDGv3 45
MZD H1 -6.769 0.670 1.559 ETKDGv3 46
MZD H2 -5.745 2.132 1.845 ETKDGv3 47
MZD H3 -3.978 0.645 -2.488 ETKDGv3 48
MZD H4 -3.506 -0.688 -1.401 ETKDGv3 49
MZD H5 1.096 -1.389 -3.674 ETKDGv3 50
MZD H6 1.118 -1.755 -5.440 ETKDGv3 51
MZD H7 6.039 0.104 -2.258 ETKDGv3 52
MZD H8 4.656 0.856 -3.111 ETKDGv3 53
MZD H9 8.193 0.007 1.055 ETKDGv3 54
MZD H10 6.393 0.822 4.189 ETKDGv3 55
MZD H11 4.832 -2.320 2.631 ETKDGv3 56
MZD H12 4.309 -0.791 3.439 ETKDGv3 57
MZD H13 1.841 0.239 0.767 ETKDGv3 58
MZD H14 2.653 0.749 2.275 ETKDGv3 59
MZD H15 3.572 0.737 0.741 ETKDGv3 60
MZD H16 2.371 -2.980 2.694 ETKDGv3 61
MZD H17 1.138 -1.925 1.916 ETKDGv3 62
MZD H18 1.961 -1.381 3.413 ETKDGv3 63
MZD H19 3.793 -3.107 0.613 ETKDGv3 64
MZD H20 1.799 -1.512 -0.647 ETKDGv3 65
MZD H21 3.214 0.002 -1.506 ETKDGv3 66
MZD H22 5.699 -2.030 -3.396 ETKDGv3 67
MZD H23 5.633 -0.747 -4.648 ETKDGv3 68
MZD H24 3.120 0.261 -4.972 ETKDGv3 69
MZD H25 0.704 0.603 -5.992 ETKDGv3 70
MZD H26 0.877 1.101 -4.277 ETKDGv3 71
MZD H27 -2.721 2.292 -3.574 ETKDGv3 72
MZD H28 -0.984 2.665 -3.849 ETKDGv3 73
MZD H29 -1.866 3.468 -2.526 ETKDGv3 74
MZD H30 0.645 2.268 -2.191 ETKDGv3 75
MZD H31 0.605 0.820 -1.208 ETKDGv3 76
MZD H32 0.872 2.874 0.155 ETKDGv3 77
MZD H33 -0.654 3.538 -0.490 ETKDGv3 78
MZD H34 -0.183 1.418 1.608 ETKDGv3 79
MZD H35 -1.353 2.720 1.539 ETKDGv3 80
MZD H36 -0.465 -0.619 -0.028 ETKDGv3 81
MZD H37 -1.044 -0.746 1.590 ETKDGv3 82
MZD H38 -2.061 -1.341 0.219 ETKDGv3 83
MZD H39 -3.461 2.121 1.431 ETKDGv3 84
MZD H40 -2.890 2.271 -0.876 ETKDGv3 85
MZD H41 -5.175 1.803 -0.663 ETKDGv3 86
MZD H42 -6.372 0.408 -1.851 ETKDGv3 87
MZD H43 -6.051 0.018 5.197 ETKDGv3 88
MZD H44 -7.281 -0.190 3.890 ETKDGv3 89
MZD H45 -6.791 1.469 4.418 ETKDGv3 90
MZD H46 -2.154 1.031 3.380 ETKDGv3 91
MZD H47 -2.649 -1.540 2.719 ETKDGv3 92
MZD H48 -3.189 -1.016 4.343 ETKDGv3 93
MZD H49 -5.268 -1.822 3.370 ETKDGv3 94
MZD H50 -5.802 -1.471 1.029 ETKDGv3 95
MZD H51 -4.048 -1.729 0.898 ETKDGv3 96
#