data_MZT
#
_chem_comp.id MZT
_chem_comp.name "4-(Trimethylammonio)pentanoic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C8 H18 N O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 1
_chem_comp.pdbx_initial_date 2013-04-02
_chem_comp.pdbx_modified_date 2014-09-05
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 160.234
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code MZT
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4BHF
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
MZT N1 N1 N 1 1 N N N N N N 22.550 31.945 87.714 -2.127 -0.266 0.080 N1 MZT 1
MZT C8 C8 C 0 1 N N N N N N 22.561 32.860 88.868 -2.077 -1.465 0.927 C8 MZT 2
MZT O4 O4 O 0 1 N N N N N N 22.779 27.163 87.882 4.001 0.427 0.280 O4 MZT 3
MZT C5 C5 C 0 1 N N N N N N 21.549 27.347 87.933 2.798 -0.108 0.016 C5 MZT 4
MZT O7 O7 O 0 1 N N N N N N 20.848 26.540 88.531 2.722 -1.175 -0.546 O7 MZT 5
MZT C6 C6 C 0 1 N N N N N N 20.810 28.506 87.266 1.543 0.622 0.422 C6 MZT 6
MZT C2 C2 C 0 1 N N R N N N 21.752 30.711 88.055 -0.954 0.575 0.353 C2 MZT 7
MZT C9 C9 C 0 1 N N N N N N 21.911 32.667 86.609 -2.126 -0.664 -1.334 C9 MZT 8
MZT C10 C10 C 0 1 N N N N N N 23.940 31.664 87.301 -3.351 0.491 0.375 C10 MZT 9
MZT C3 C3 C 0 1 N N N N N N 21.687 29.704 86.909 0.320 -0.199 0.007 C3 MZT 10
MZT C21 C21 C 0 1 N N N N N N 22.222 29.982 89.301 -1.026 1.844 -0.499 C21 MZT 11
MZT H81C H81C H 0 0 N N N N N N 23.143 33.759 88.618 -1.952 -1.169 1.969 H81C MZT 12
MZT H82C H82C H 0 0 N N N N N N 21.529 33.149 89.117 -3.005 -2.026 0.817 H82C MZT 13
MZT H83C H83C H 0 0 N N N N N N 23.019 32.355 89.732 -1.237 -2.089 0.623 H83C MZT 14
MZT H2 H2 H 0 1 N N N N N N 20.720 31.039 88.248 -0.939 0.847 1.409 H2 MZT 15
MZT H91C H91C H 0 0 N N N N N N 21.879 32.022 85.719 -2.996 -1.288 -1.536 H91C MZT 16
MZT H92C H92C H 0 0 N N N N N N 20.887 32.946 86.897 -2.162 0.226 -1.962 H92C MZT 17
MZT H93C H93C H 0 0 N N N N N N 22.488 33.576 86.382 -1.217 -1.225 -1.552 H93C MZT 18
MZT H101 H101 H 0 0 N N N N N N 23.936 30.981 86.439 -3.352 0.787 1.424 H101 MZT 19
MZT H102 H102 H 0 0 N N N N N N 24.436 32.605 87.021 -3.388 1.381 -0.254 H102 MZT 20
MZT H103 H103 H 0 0 N N N N N N 24.483 31.197 88.136 -4.221 -0.133 0.172 H103 MZT 21
MZT H4 H4 H 0 1 N N N N N N 23.000 26.366 88.349 4.777 -0.078 0.001 H4 MZT 22
MZT H61C H61C H 0 0 N N N N N N 20.350 28.131 86.340 1.538 0.762 1.503 H61C MZT 23
MZT H62C H62C H 0 0 N N N N N N 20.023 28.851 87.953 1.513 1.594 -0.071 H62C MZT 24
MZT H31C H31C H 0 0 N N N N N N 22.704 29.349 86.687 0.353 -0.383 -1.066 H31C MZT 25
MZT H32C H32C H 0 0 N N N N N N 21.270 30.200 86.020 0.323 -1.150 0.539 H32C MZT 26
MZT H211 H211 H 0 0 N N N N N N 21.587 29.100 89.472 -0.156 2.468 -0.296 H211 MZT 27
MZT H212 H212 H 0 0 N N N N N N 23.266 29.661 89.166 -1.041 1.573 -1.554 H212 MZT 28
MZT H213 H213 H 0 0 N N N N N N 22.155 30.656 90.168 -1.934 2.396 -0.252 H213 MZT 29
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
MZT N1 C8 SING N N 1
MZT N1 C2 SING N N 2
MZT N1 C9 SING N N 3
MZT N1 C10 SING N N 4
MZT O4 C5 SING N N 5
MZT C5 O7 DOUB N N 6
MZT C5 C6 SING N N 7
MZT C6 C3 SING N N 8
MZT C2 C3 SING N N 9
MZT C2 C21 SING N N 10
MZT C8 H81C SING N N 11
MZT C8 H82C SING N N 12
MZT C8 H83C SING N N 13
MZT C2 H2 SING N N 14
MZT C9 H91C SING N N 15
MZT C9 H92C SING N N 16
MZT C9 H93C SING N N 17
MZT C10 H101 SING N N 18
MZT C10 H102 SING N N 19
MZT C10 H103 SING N N 20
MZT O4 H4 SING N N 21
MZT C6 H61C SING N N 22
MZT C6 H62C SING N N 23
MZT C3 H31C SING N N 24
MZT C3 H32C SING N N 25
MZT C21 H211 SING N N 26
MZT C21 H212 SING N N 27
MZT C21 H213 SING N N 28
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
MZT SMILES ACDLabs 12.01 O=C(O)CCC([N+](C)(C)C)C
MZT InChI InChI 1.03 InChI=1S/C8H17NO2/c1-7(9(2,3)4)5-6-8(10)11/h7H,5-6H2,1-4H3/p+1/t7-/m1/s1
MZT InChIKey InChI 1.03 RXHVPPWXTMHWGY-SSDOTTSWSA-O
MZT SMILES_CANONICAL CACTVS 3.385 C[C@H](CCC(O)=O)[N+](C)(C)C
MZT SMILES CACTVS 3.385 C[CH](CCC(O)=O)[N+](C)(C)C
MZT SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 C[C@H](CCC(=O)O)[N+](C)(C)C
MZT SMILES "OpenEye OEToolkits" 1.9.2 CC(CCC(=O)O)[N+](C)(C)C
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
MZT "SYSTEMATIC NAME" ACDLabs 12.01 (2R)-4-carboxy-N,N,N-trimethylbutan-2-aminium
MZT "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 trimethyl-[(2R)-5-oxidanyl-5-oxidanylidene-pentan-2-yl]azanium
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
MZT 'Create component' 2013-04-02 EBI
MZT 'Initial release' 2014-03-12 RCSB
MZT 'Modify descriptor' 2014-09-05 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
MZT N1 N 4.299 -0.375 1
MZT C8 C 3.000 -1.125 2
MZT O4 O 10.794 0.375 3
MZT C5 C 9.495 -0.375 4
MZT O7 O 9.495 -1.875 5
MZT C6 C 8.196 0.375 6
MZT C2 C 5.598 0.375 7
MZT C9 C 3.549 0.924 8
MZT C10 C 5.049 -1.674 9
MZT C3 C 6.897 -0.375 10
MZT C21 C 5.598 1.875 11
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
MZT N1 C8 SINGLE NONE 1
MZT N1 C2 SINGLE NONE 2
MZT N1 C9 SINGLE NONE 3
MZT N1 C10 SINGLE NONE 4
MZT O4 C5 SINGLE NONE 5
MZT C5 O7 DOUBLE NONE 6
MZT C5 C6 SINGLE NONE 7
MZT C6 C3 SINGLE NONE 8
MZT C2 C3 SINGLE NONE 9
MZT C2 C21 SINGLE BEGINDASH 10
#
#
#
_pdbe_chem_comp_rdkit_properties.comp_id MZT
_pdbe_chem_comp_rdkit_properties.exactmw 160.133
_pdbe_chem_comp_rdkit_properties.amw 160.237
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 3
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 1
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 8
_pdbe_chem_comp_rdkit_properties.NumHBD 1
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 11
_pdbe_chem_comp_rdkit_properties.NumAtoms 29
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 3
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.875
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 93.596
_pdbe_chem_comp_rdkit_properties.tpsa 37.300
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.946
_pdbe_chem_comp_rdkit_properties.CrippenMR 44.364
_pdbe_chem_comp_rdkit_properties.chi0v 5.264
_pdbe_chem_comp_rdkit_properties.chi1v 2.303
_pdbe_chem_comp_rdkit_properties.chi2v 0.618
_pdbe_chem_comp_rdkit_properties.chi3v 0.618
_pdbe_chem_comp_rdkit_properties.chi4v 0.194
_pdbe_chem_comp_rdkit_properties.chi0n 23.264
_pdbe_chem_comp_rdkit_properties.chi1n 11.211
_pdbe_chem_comp_rdkit_properties.chi2n 0.618
_pdbe_chem_comp_rdkit_properties.chi3n 0.618
_pdbe_chem_comp_rdkit_properties.chi4n 0.194
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.570
_pdbe_chem_comp_rdkit_properties.kappa1 1.233
_pdbe_chem_comp_rdkit_properties.kappa2 3.715
_pdbe_chem_comp_rdkit_properties.kappa3 4.785
_pdbe_chem_comp_rdkit_properties.Phi 0.416
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
MZT UniChem PDBe MZT
MZT UniChem ZINC ZINC000098209198
MZT UniChem PubChem 73167559
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
MZT N1 -1.381 -0.282 -0.024 ETKDGv3 1
MZT C8 -2.427 -1.341 -0.017 ETKDGv3 2
MZT O4 4.092 1.213 -0.211 ETKDGv3 3
MZT C5 2.860 1.720 -0.610 ETKDGv3 4
MZT O7 2.804 2.624 -1.487 ETKDGv3 5
MZT C6 1.599 1.156 -0.031 ETKDGv3 6
MZT C2 -0.026 -0.916 -0.283 ETKDGv3 7
MZT C9 -1.457 0.427 1.281 ETKDGv3 8
MZT C10 -1.749 0.670 -1.104 ETKDGv3 9
MZT C3 1.081 0.002 -0.906 ETKDGv3 10
MZT C21 0.547 -1.706 0.922 ETKDGv3 11
MZT H81C -2.450 -1.894 -0.983 ETKDGv3 12
MZT H82C -2.268 -2.078 0.797 ETKDGv3 13
MZT H83C -3.442 -0.909 0.143 ETKDGv3 14
MZT H2 -0.165 -1.691 -1.073 ETKDGv3 15
MZT H91C -0.655 1.176 1.398 ETKDGv3 16
MZT H92C -1.394 -0.281 2.136 ETKDGv3 17
MZT H93C -2.426 0.964 1.388 ETKDGv3 18
MZT H101 -1.648 0.195 -2.106 ETKDGv3 19
MZT H102 -1.122 1.585 -1.078 ETKDGv3 20
MZT H103 -2.802 1.017 -1.003 ETKDGv3 21
MZT H4 4.954 1.572 -0.606 ETKDGv3 22
MZT H61C 0.854 1.974 0.016 ETKDGv3 23
MZT H62C 1.814 0.809 0.999 ETKDGv3 24
MZT H31C 1.946 -0.654 -1.154 ETKDGv3 25
MZT H32C 0.748 0.406 -1.886 ETKDGv3 26
MZT H211 1.496 -2.204 0.632 ETKDGv3 27
MZT H212 0.763 -1.048 1.787 ETKDGv3 28
MZT H213 -0.146 -2.506 1.249 ETKDGv3 29
#