data_N0K
#
_chem_comp.id N0K
_chem_comp.name
5-[ethyl(methyl)amino]-~{N}-[6-[[(1~{S},2~{R},3~{S},4~{R})-2-(hydroxymethyl)-3,4-bis(oxidanyl)cyclopentyl]amino]hexyl]naphthalene-1-sulfonamide
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H37 N3 O5 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-11-04
_chem_comp.pdbx_modified_date 2020-08-14
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 479.633
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code N0K
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag Y
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6TBH
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
N0K C4 C1 C 0 1 N N S N N N 63.548 28.246 33.611 7.005 -0.233 -0.714 C4 N0K 1
N0K C5 C2 C 0 1 N N R N N N 63.041 28.793 34.984 8.202 -0.448 0.229 C5 N0K 2
N0K O4 O1 O 0 1 N N N N N N 72.090 32.528 32.613 -4.996 -2.807 -1.434 O4 N0K 3
N0K C6 C3 C 0 1 N N S N N N 61.803 27.965 35.293 9.062 0.830 0.149 C6 N0K 4
N0K C7 C4 C 0 1 Y N N N N N 74.506 31.663 32.420 -4.784 -1.222 0.562 C7 N0K 5
N0K C8 C5 C 0 1 N N N N N N 64.050 29.010 36.053 7.709 -0.660 1.662 C8 N0K 6
N0K C15 C6 C 0 1 N N N N N N 65.994 28.150 33.579 4.629 -0.683 -0.822 C15 N0K 7
N0K S1 S1 S 0 1 N N N N N N 73.050 31.643 33.119 -4.107 -2.569 -0.352 S1 N0K 8
N0K O2 O2 O 0 1 N N N N N N 73.182 32.047 34.565 -3.757 -3.564 0.600 O2 N0K 9
N0K N21 N1 N 0 1 N N N N N N 72.519 30.146 32.836 -2.686 -2.042 -1.020 N21 N0K 10
N0K C20 C7 C 0 1 N N N N N N 71.216 29.934 33.485 -1.569 -1.654 -0.156 C20 N0K 11
N0K C19 C8 C 0 1 N N N N N N 70.402 29.076 32.549 -0.281 -1.601 -0.980 C19 N0K 12
N0K C18 C9 C 0 1 N N N N N N 69.782 27.854 33.298 0.886 -1.196 -0.077 C18 N0K 13
N0K C17 C10 C 0 1 N N N N N N 68.419 28.207 33.692 2.174 -1.142 -0.901 C17 N0K 14
N0K C16 C11 C 0 1 N N N N N N 67.221 27.256 33.520 3.341 -0.737 0.002 C16 N0K 15
N0K N7 N2 N 0 1 N N N N N N 64.722 27.357 33.663 5.749 -0.295 0.045 N7 N0K 16
N0K C3 C12 C 0 1 N N N N N N 62.354 27.399 33.109 7.179 1.169 -1.334 C3 N0K 17
N0K O9 O3 O 0 1 N N N N N N 63.437 29.685 37.164 8.818 -0.974 2.506 O9 N0K 18
N0K O10 O4 O 0 1 N N N N N N 62.256 26.683 35.693 8.720 1.729 1.206 O10 N0K 19
N0K C2 C13 C 0 1 N N R N N N 61.177 27.829 33.941 8.699 1.446 -1.225 C2 N0K 20
N0K O11 O5 O 0 1 N N N N N N 60.075 26.936 33.893 8.960 2.851 -1.234 O11 N0K 21
N0K H1 H1 H 0 1 N N N N N N 63.724 29.086 32.922 7.005 -0.991 -1.497 H1 N0K 22
N0K H2 H2 H 0 1 N N N N N N 62.654 29.796 34.750 8.783 -1.311 -0.097 H2 N0K 23
N0K H3 H3 H 0 1 N N N N N N 61.141 28.456 36.022 10.122 0.580 0.190 H3 N0K 24
N0K H7 H7 H 0 1 N N N N N N 64.444 28.039 36.387 7.227 0.251 2.018 H7 N0K 25
N0K H8 H8 H 0 1 N N N N N N 64.873 29.625 35.660 6.993 -1.481 1.682 H8 N0K 26
N0K H9 H9 H 0 1 N N N N N N 66.068 28.797 34.466 4.826 -1.665 -1.252 H9 N0K 27
N0K H10 H10 H 0 1 N N N N N N 65.965 28.773 32.673 4.518 0.048 -1.622 H10 N0K 28
N0K H11 H11 H 0 1 N N N N N N 72.422 30.012 31.850 -2.594 -1.990 -1.985 H11 N0K 29
N0K H12 H12 H 0 1 N N N N N N 70.713 30.898 33.650 -1.766 -0.672 0.274 H12 N0K 30
N0K H13 H13 H 0 1 N N N N N N 71.351 29.421 34.449 -1.458 -2.386 0.645 H13 N0K 31
N0K H14 H14 H 0 1 N N N N N N 71.052 28.709 31.741 -0.084 -2.582 -1.410 H14 N0K 32
N0K H15 H15 H 0 1 N N N N N N 69.591 29.683 32.120 -0.392 -0.869 -1.780 H15 N0K 33
N0K H16 H16 H 0 1 N N N N N N 69.763 26.979 32.632 0.689 -0.214 0.353 H16 N0K 34
N0K H17 H17 H 0 1 N N N N N N 70.380 27.622 34.191 0.997 -1.927 0.724 H17 N0K 35
N0K H20 H20 H 0 1 N N N N N N 67.197 26.514 34.332 3.452 -1.469 0.802 H20 N0K 36
N0K H21 H21 H 0 1 N N N N N N 67.275 26.738 32.551 3.143 0.245 0.432 H21 N0K 37
N0K H22 H22 H 0 1 N N N N N N 64.683 26.717 32.896 5.562 0.583 0.506 H22 N0K 38
N0K H24 H24 H 0 1 N N N N N N 62.164 27.596 32.044 6.866 1.166 -2.378 H24 N0K 39
N0K H25 H25 H 0 1 N N N N N N 62.556 26.327 33.253 6.615 1.910 -0.767 H25 N0K 40
N0K H26 H26 H 0 1 N N N N N N 64.083 29.823 37.847 8.579 -1.121 3.431 H26 N0K 41
N0K H27 H27 H 0 1 N N N N N N 62.659 26.743 36.551 9.231 2.550 1.204 H27 N0K 42
N0K H28 H28 H 0 1 N N N N N N 60.858 28.826 33.602 9.242 0.946 -2.028 H28 N0K 43
N0K H29 H29 H 0 1 N N N N N N 59.373 27.270 34.439 8.676 3.299 -2.043 H29 N0K 44
N0K C1 C14 C 0 1 Y N N N N N ? ? ? -5.187 -0.051 -0.102 C1 N0K 45
N0K C9 C15 C 0 1 Y N N N N N ? ? ? -5.729 1.021 0.650 C9 N0K 46
N0K C10 C16 C 0 1 Y N N N N N ? ? ? -5.853 0.892 2.042 C10 N0K 47
N0K C11 C17 C 0 1 Y N N N N N ? ? ? -5.452 -0.257 2.652 C11 N0K 48
N0K C12 C18 C 0 1 Y N N N N N ? ? ? -4.924 -1.314 1.912 C12 N0K 49
N0K C13 C19 C 0 1 Y N N N N N ? ? ? -6.134 2.198 -0.016 C13 N0K 50
N0K C14 C20 C 0 1 Y N N N N N ? ? ? -5.994 2.282 -1.385 C14 N0K 51
N0K C21 C21 C 0 1 Y N N N N N ? ? ? -5.460 1.223 -2.113 C21 N0K 52
N0K C22 C22 C 0 1 Y N N N N N ? ? ? -5.061 0.077 -1.496 C22 N0K 53
N0K N1 N3 N 0 1 N N N N N N ? ? ? -6.670 3.263 0.703 N1 N0K 54
N0K C24 C24 C 0 1 N N N N N N ? ? ? -5.857 4.475 0.533 C24 N0K 55
N0K C25 C25 C 0 1 N N N N N N ? ? ? -8.067 3.508 0.319 C25 N0K 56
N0K H4 H4 H 0 1 N N N N N N ? ? ? -4.614 -2.215 2.420 H4 N0K 57
N0K H5 H5 H 0 1 N N N N N N ? ? ? -5.548 -0.353 3.723 H5 N0K 58
N0K H6 H6 H 0 1 N N N N N N ? ? ? -6.264 1.702 2.627 H6 N0K 59
N0K H31 H31 H 0 1 N N N N N N ? ? ? -4.649 -0.735 -2.077 H31 N0K 60
N0K H32 H32 H 0 1 N N N N N N ? ? ? -5.360 1.312 -3.184 H32 N0K 61
N0K H33 H33 H 0 1 N N N N N N ? ? ? -6.303 3.181 -1.898 H33 N0K 62
N0K H23 H23 H 0 1 N N N N N N ? ? ? -8.660 2.616 0.521 H23 N0K 63
N0K H30 H30 H 0 1 N N N N N N ? ? ? -8.461 4.345 0.896 H30 N0K 64
N0K H34 H34 H 0 1 N N N N N N ? ? ? -8.116 3.744 -0.744 H34 N0K 65
N0K H35 H35 H 0 1 N N N N N N ? ? ? -5.826 4.746 -0.523 H35 N0K 66
N0K H36 H36 H 0 1 N N N N N N ? ? ? -6.298 5.292 1.104 H36 N0K 67
N0K H18 H18 H 0 1 N N N N N N 68.466 28.443 34.765 2.371 -2.124 -1.331 H18 N0K 68
N0K H19 H19 H 0 1 N N N N N N 68.167 29.117 33.127 2.063 -0.410 -1.701 H19 N0K 69
N0K H37 H37 H 0 1 N N N N N N ? ? ? -4.845 4.287 0.890 H37 N0K 70
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
N0K C7 S1 SING N N 1
N0K C19 C18 SING N N 2
N0K C19 C20 SING N N 3
N0K O4 S1 DOUB N N 4
N0K N21 S1 SING N N 5
N0K N21 C20 SING N N 6
N0K C3 C4 SING N N 7
N0K C3 C2 SING N N 8
N0K S1 O2 DOUB N N 9
N0K C18 C17 SING N N 10
N0K C16 C15 SING N N 11
N0K C16 C17 SING N N 12
N0K C15 N7 SING N N 13
N0K C4 N7 SING N N 14
N0K C4 C5 SING N N 15
N0K O11 C2 SING N N 16
N0K C2 C6 SING N N 17
N0K C5 C6 SING N N 18
N0K C5 C8 SING N N 19
N0K C6 O10 SING N N 20
N0K C8 O9 SING N N 21
N0K C4 H1 SING N N 22
N0K C5 H2 SING N N 23
N0K C6 H3 SING N N 24
N0K C8 H7 SING N N 25
N0K C8 H8 SING N N 26
N0K C15 H9 SING N N 27
N0K C15 H10 SING N N 28
N0K N21 H11 SING N N 29
N0K C20 H12 SING N N 30
N0K C20 H13 SING N N 31
N0K C19 H14 SING N N 32
N0K C19 H15 SING N N 33
N0K C18 H16 SING N N 34
N0K C18 H17 SING N N 35
N0K C16 H20 SING N N 36
N0K C16 H21 SING N N 37
N0K N7 H22 SING N N 38
N0K C3 H24 SING N N 39
N0K C3 H25 SING N N 40
N0K O9 H26 SING N N 41
N0K O10 H27 SING N N 42
N0K C2 H28 SING N N 43
N0K O11 H29 SING N N 44
N0K C7 C1 SING Y N 45
N0K C1 C9 DOUB Y N 46
N0K C9 C10 SING Y N 47
N0K C10 C11 DOUB Y N 48
N0K C11 C12 SING Y N 49
N0K C12 C7 DOUB Y N 50
N0K C9 C13 SING Y N 51
N0K C13 C14 DOUB Y N 52
N0K C14 C21 SING Y N 53
N0K C21 C22 DOUB Y N 54
N0K C22 C1 SING Y N 55
N0K C13 N1 SING N N 56
N0K N1 C24 SING N N 57
N0K N1 C25 SING N N 58
N0K C12 H4 SING N N 59
N0K C11 H5 SING N N 60
N0K C10 H6 SING N N 61
N0K C22 H31 SING N N 62
N0K C21 H32 SING N N 63
N0K C14 H33 SING N N 64
N0K C25 H23 SING N N 65
N0K C25 H30 SING N N 66
N0K C25 H34 SING N N 67
N0K C24 H35 SING N N 68
N0K C24 H36 SING N N 69
N0K C17 H18 SING N N 70
N0K C17 H19 SING N N 71
N0K C24 H37 SING N N 72
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
N0K InChI InChI 1.03 InChI=1S/C24H37N3O5S/c1-27(2)21-11-7-10-18-17(21)9-8-12-23(18)33(31,32)26-14-6-4-3-5-13-25-20-15-22(29)24(30)19(20)16-28/h7-12,19-20,22,24-26,28-30H,3-6,13-16H2,1-2H3/t19-,20-,22+,24-/m0/s1
N0K InChIKey InChI 1.03 YQJKLKLPVRSCCE-QRVLJTFESA-N
N0K SMILES_CANONICAL CACTVS 3.385 CN(C)c1cccc2c1cccc2[S](=O)(=O)NCCCCCCN[C@H]3C[C@@H](O)[C@@H](O)[C@H]3CO
N0K SMILES CACTVS 3.385 CN(C)c1cccc2c1cccc2[S](=O)(=O)NCCCCCCN[CH]3C[CH](O)[CH](O)[CH]3CO
N0K SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CN(C)c1cccc2c1cccc2S(=O)(=O)NCCCCCCN[C@H]3C[C@H]([C@H]([C@H]3CO)O)O
N0K SMILES "OpenEye OEToolkits" 2.0.7 CN(C)c1cccc2c1cccc2S(=O)(=O)NCCCCCCNC3CC(C(C3CO)O)O
#
_pdbx_chem_comp_identifier.comp_id N0K
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
5-(dimethylamino)-~{N}-[6-[[(1~{S},2~{R},3~{S},4~{R})-2-(hydroxymethyl)-3,4-bis(oxidanyl)cyclopentyl]amino]hexyl]naphthalene-1-sulfonamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
N0K 'Create component' 2019-11-04 PDBE
N0K 'Initial release' 2020-08-19 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
N0K C4 C 5.557 -6.473 1
N0K C5 C 6.770 -7.354 2
N0K O4 O 9.253 4.027 3
N0K C6 C 6.307 -8.781 4
N0K C7 C 10.753 5.527 5
N0K C8 C 8.197 -6.891 6
N0K C15 C 6.856 -4.223 7
N0K S1 S 10.753 4.027 8
N0K O2 O 12.253 4.027 9
N0K N21 N 10.753 2.527 10
N0K C20 C 9.454 1.777 11
N0K C19 C 9.454 0.277 12
N0K C18 C 8.155 -0.473 13
N0K C17 C 8.155 -1.973 14
N0K C16 C 6.856 -2.723 15
N0K N7 N 5.557 -4.973 16
N0K C3 C 4.343 -7.354 17
N0K O9 O 9.311 -7.895 18
N0K O10 O 7.188 -9.995 19
N0K C2 C 4.807 -8.781 20
N0K O11 O 3.925 -9.995 21
N0K C1 C 12.052 6.277 22
N0K C9 C 12.052 7.777 23
N0K C10 C 10.753 8.527 24
N0K C11 C 9.454 7.777 25
N0K C12 C 9.454 6.277 26
N0K C13 C 13.393 8.579 27
N0K C14 C 14.752 7.809 28
N0K C21 C 14.752 6.246 29
N0K C22 C 13.393 5.475 30
N0K N1 N 13.375 10.079 31
N0K C24 C 14.666 10.844 32
N0K C25 C 12.068 10.814 33
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
N0K C7 S1 SINGLE NONE 1
N0K C19 C18 SINGLE NONE 2
N0K C19 C20 SINGLE NONE 3
N0K O4 S1 DOUBLE NONE 4
N0K N21 S1 SINGLE NONE 5
N0K N21 C20 SINGLE NONE 6
N0K C3 C4 SINGLE NONE 7
N0K C3 C2 SINGLE NONE 8
N0K S1 O2 DOUBLE NONE 9
N0K C18 C17 SINGLE NONE 10
N0K C16 C15 SINGLE NONE 11
N0K C16 C17 SINGLE NONE 12
N0K C15 N7 SINGLE NONE 13
N0K C4 N7 SINGLE BEGINDASH 14
N0K C4 C5 SINGLE NONE 15
N0K C2 O11 SINGLE BEGINDASH 16
N0K C2 C6 SINGLE NONE 17
N0K C5 C6 SINGLE NONE 18
N0K C5 C8 SINGLE BEGINDASH 19
N0K C6 O10 SINGLE BEGINDASH 20
N0K C8 O9 SINGLE NONE 21
N0K C7 C1 DOUBLE NONE 22
N0K C1 C9 SINGLE NONE 23
N0K C9 C10 DOUBLE NONE 24
N0K C10 C11 SINGLE NONE 25
N0K C11 C12 DOUBLE NONE 26
N0K C12 C7 SINGLE NONE 27
N0K C9 C13 SINGLE NONE 28
N0K C13 C14 DOUBLE NONE 29
N0K C14 C21 SINGLE NONE 30
N0K C21 C22 DOUBLE NONE 31
N0K C22 C1 SINGLE NONE 32
N0K C13 N1 SINGLE NONE 33
N0K N1 C24 SINGLE NONE 34
N0K N1 C25 SINGLE NONE 35
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
N0K MurckoScaffold S1 scaffold O=S(=O)(NCCCCCCNC1CCCC1)c1cccc2ccccc12 InChI=1S/C21H30N2O2S/c24-26(25,21-15-9-11-18-10-3-6-14-20(18)21)23-17-8-2-1-7-16-22-19-12-4-5-13-19/h3,6,9-11,14-15,19,22-23H,1-2,4-5,7-8,12-13,16-17H2 PWKUUWHYJCZGEX-UHFFFAOYSA-N
N0K cyclopentane F1 fragment C1CCCC1 InChI=1S/C5H10/c1-2-4-5-3-1/h1-5H2 RGSFGYAAUTVSQA-UHFFFAOYSA-N
N0K napthalene F2 fragment c1ccc2ccccc2c1 InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H UFWIBTONFRDIAS-UHFFFAOYSA-N
N0K phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
N0K C4 S1 1
N0K C5 S1 1
N0K O4 S1 1
N0K C6 S1 1
N0K C7 S1 1
N0K C15 S1 1
N0K S1 S1 1
N0K O2 S1 1
N0K N21 S1 1
N0K C20 S1 1
N0K C19 S1 1
N0K C18 S1 1
N0K C17 S1 1
N0K C16 S1 1
N0K N7 S1 1
N0K C3 S1 1
N0K C2 S1 1
N0K C1 S1 1
N0K C9 S1 1
N0K C10 S1 1
N0K C11 S1 1
N0K C12 S1 1
N0K C13 S1 1
N0K C14 S1 1
N0K C21 S1 1
N0K C22 S1 1
N0K C4 F1 1
N0K C3 F1 1
N0K C2 F1 1
N0K C6 F1 1
N0K C5 F1 1
N0K H7 F2 1
N0K H8 F2 1
N0K C7 F2 1
N0K H1 F2 1
N0K H2 F2 1
N0K H3 F2 1
N0K H9 F2 1
N0K H10 F2 1
N0K H11 F2 1
N0K H12 F2 1
N0K C7 F3 1
N0K H1 F3 1
N0K H2 F3 1
N0K H3 F3 1
N0K H7 F3 1
N0K H8 F3 1
N0K H1 F3 2
N0K H2 F3 2
N0K H9 F3 2
N0K H10 F3 2
N0K H11 F3 2
N0K H12 F3 2
#
_pdbe_chem_comp_rdkit_properties.comp_id N0K
_pdbe_chem_comp_rdkit_properties.exactmw 479.245
_pdbe_chem_comp_rdkit_properties.amw 479.643
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 17
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 33
_pdbe_chem_comp_rdkit_properties.NumAtoms 70
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.583
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 248.579
_pdbe_chem_comp_rdkit_properties.tpsa 122.130
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.520
_pdbe_chem_comp_rdkit_properties.CrippenMR 128.469
_pdbe_chem_comp_rdkit_properties.chi0v 16.608
_pdbe_chem_comp_rdkit_properties.chi1v 9.614
_pdbe_chem_comp_rdkit_properties.chi2v 4.718
_pdbe_chem_comp_rdkit_properties.chi3v 4.718
_pdbe_chem_comp_rdkit_properties.chi4v 3.068
_pdbe_chem_comp_rdkit_properties.chi0n 52.791
_pdbe_chem_comp_rdkit_properties.chi1n 26.293
_pdbe_chem_comp_rdkit_properties.chi2n 3.564
_pdbe_chem_comp_rdkit_properties.chi3n 3.564
_pdbe_chem_comp_rdkit_properties.chi4n 2.220
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.750
_pdbe_chem_comp_rdkit_properties.kappa1 5.794
_pdbe_chem_comp_rdkit_properties.kappa2 11.592
_pdbe_chem_comp_rdkit_properties.kappa3 6.230
_pdbe_chem_comp_rdkit_properties.Phi 2.035
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
N0K UniChem PDBe N0K
N0K UniChem PubChem 154573800
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
N0K C4 -5.188 -1.791 -0.361 ETKDGv3 1
N0K C5 -6.680 -1.380 -0.516 ETKDGv3 2
N0K O4 3.248 3.784 -0.046 ETKDGv3 3
N0K C6 -7.307 -1.512 0.880 ETKDGv3 4
N0K C7 3.993 1.362 -0.945 ETKDGv3 5
N0K C8 -7.005 -0.055 -1.231 ETKDGv3 6
N0K C15 -4.152 0.413 0.305 ETKDGv3 7
N0K S1 3.379 2.985 -1.314 ETKDGv3 8
N0K O2 4.344 3.672 -2.239 ETKDGv3 9
N0K N21 1.829 2.890 -2.098 ETKDGv3 10
N0K C20 0.776 2.659 -1.104 ETKDGv3 11
N0K C19 -0.528 2.282 -1.816 ETKDGv3 12
N0K C18 -1.702 2.087 -0.843 ETKDGv3 13
N0K C17 -1.625 0.749 -0.087 ETKDGv3 14
N0K C16 -2.763 0.577 0.936 ETKDGv3 15
N0K N7 -4.168 -0.744 -0.607 ETKDGv3 16
N0K C3 -5.051 -2.443 1.027 ETKDGv3 17
N0K O9 -6.521 -0.085 -2.545 ETKDGv3 18
N0K O10 -7.226 -0.306 1.600 ETKDGv3 19
N0K C2 -6.471 -2.593 1.570 ETKDGv3 20
N0K O11 -6.487 -2.458 2.967 ETKDGv3 21
N0K H1 -4.997 -2.594 -1.110 ETKDGv3 22
N0K H2 -7.161 -2.174 -1.134 ETKDGv3 23
N0K H3 -8.368 -1.851 0.808 ETKDGv3 24
N0K H7 -6.592 0.817 -0.686 ETKDGv3 25
N0K H8 -8.111 0.067 -1.259 ETKDGv3 26
N0K H9 -4.416 1.342 -0.244 ETKDGv3 27
N0K H10 -4.891 0.313 1.122 ETKDGv3 28
N0K H11 1.654 3.819 -2.545 ETKDGv3 29
N0K H12 0.617 3.579 -0.498 ETKDGv3 30
N0K H13 1.073 1.834 -0.424 ETKDGv3 31
N0K H14 -0.793 3.101 -2.520 ETKDGv3 32
N0K H15 -0.375 1.359 -2.418 ETKDGv3 33
N0K H16 -2.636 2.110 -1.443 ETKDGv3 34
N0K H17 -1.742 2.934 -0.123 ETKDGv3 35
N0K H20 -2.544 -0.322 1.552 ETKDGv3 36
N0K H21 -2.776 1.450 1.624 ETKDGv3 37
N0K H22 -4.220 -0.418 -1.599 ETKDGv3 38
N0K H24 -4.441 -1.831 1.722 ETKDGv3 39
N0K H25 -4.562 -3.439 0.949 ETKDGv3 40
N0K H26 -6.744 0.797 -2.941 ETKDGv3 41
N0K H27 -8.049 0.209 1.394 ETKDGv3 42
N0K H28 -6.858 -3.598 1.279 ETKDGv3 43
N0K H29 -7.392 -2.736 3.266 ETKDGv3 44
N0K C1 5.132 1.155 -0.234 ETKDGv3 45
N0K C9 5.574 -0.241 0.067 ETKDGv3 46
N0K C10 4.841 -1.281 -0.366 ETKDGv3 47
N0K C11 3.627 -1.052 -1.164 ETKDGv3 48
N0K C12 3.230 0.192 -1.445 ETKDGv3 49
N0K C13 6.811 -0.441 0.869 ETKDGv3 50
N0K C14 7.499 0.625 1.308 ETKDGv3 51
N0K C21 7.075 2.004 1.001 ETKDGv3 52
N0K C22 5.981 2.260 0.278 ETKDGv3 53
N0K N1 7.290 -1.766 1.161 ETKDGv3 54
N0K C24 8.000 -2.504 0.118 ETKDGv3 55
N0K C25 7.459 -2.181 2.552 ETKDGv3 56
N0K H4 2.342 0.331 -2.045 ETKDGv3 57
N0K H5 3.058 -1.897 -1.530 ETKDGv3 58
N0K H6 5.125 -2.301 -0.145 ETKDGv3 59
N0K H31 5.743 3.294 0.074 ETKDGv3 60
N0K H32 7.678 2.828 1.363 ETKDGv3 61
N0K H33 8.405 0.483 1.884 ETKDGv3 62
N0K H23 7.314 -3.279 2.643 ETKDGv3 63
N0K H30 8.479 -1.918 2.902 ETKDGv3 64
N0K H34 6.709 -1.679 3.200 ETKDGv3 65
N0K H35 7.653 -2.194 -0.891 ETKDGv3 66
N0K H36 7.813 -3.593 0.229 ETKDGv3 67
N0K H18 -0.669 0.698 0.474 ETKDGv3 68
N0K H19 -1.630 -0.095 -0.810 ETKDGv3 69
N0K H37 9.090 -2.309 0.198 ETKDGv3 70
#