data_N12
#
_chem_comp.id N12
_chem_comp.name
N-[(1R)-2-[(1-{[({6-[AMINO(IMINO)METHYL]PYRIDIN-3-YL}METHYL)AMINO]CARBONYL}CYCLOPENTYL)AMINO]-1-(CYCLOHEXYLMETHYL)-2-OXOETHYL]GLYCINE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C24 H36 N6 O4"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2006-10-30
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 472.580
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code N12
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
N12 C1 C1 C 0 1 N N N N N N 14.205 16.015 22.955 0.530 -6.655 -0.240 C1 N12 1
N12 C2 C2 C 0 1 N N N N N N 15.621 16.400 22.620 1.669 -6.262 -1.129 C2 N12 2
N12 N3 N3 N 0 1 N N N N N N 16.227 17.114 23.748 1.133 -5.871 -2.432 N3 N12 3
N12 C4 C4 C 0 1 N N R N N N 17.501 17.804 23.553 2.177 -5.449 -3.330 C4 N12 4
N12 C5 C5 C 0 1 N N N N N N 17.249 19.067 22.761 3.128 -6.627 -3.514 C5 N12 5
N12 C6 C6 C 0 1 N N N N N N 18.137 18.114 24.935 1.626 -4.996 -4.681 C6 N12 6
N12 C7 C7 C 0 1 N N N N N N 19.450 18.900 24.805 0.652 -3.827 -4.550 C7 N12 7
N12 C8 C8 C 0 1 N N N N N N 19.877 19.416 26.192 1.354 -2.601 -3.952 C8 N12 8
N12 C9 C9 C 0 1 N N N N N N 21.192 20.237 26.083 0.414 -1.401 -3.860 C9 N12 9
N12 C10 C10 C 0 1 N N N N N N 22.320 19.387 25.444 -0.214 -1.073 -5.211 C10 N12 10
N12 C11 C11 C 0 1 N N N N N N 21.872 18.816 24.071 -0.913 -2.287 -5.814 C11 N12 11
N12 C12 C12 C 0 1 N N N N N N 20.570 17.993 24.229 0.025 -3.488 -5.909 C12 N12 12
N12 O13 O13 O 0 1 N N N N N N 16.449 19.896 23.166 2.791 -7.682 -4.048 O13 N12 13
N12 N14 N14 N 0 1 N N N N N N 17.938 19.233 21.589 4.408 -6.343 -3.059 N14 N12 14
N12 C15 C15 C 0 1 N N N N N N 17.825 20.398 20.673 5.500 -7.277 -3.168 C15 N12 15
N12 C16 C16 C 0 1 N N N N N N 16.363 20.712 20.324 5.644 -7.532 -4.656 C16 N12 16
N12 O17 O17 O 0 1 N N N N N N 15.627 19.797 19.973 5.536 -8.675 -5.086 O17 N12 17
N12 N18 N18 N 0 1 N N N N N N 15.872 21.995 20.394 5.896 -6.395 -5.400 N18 N12 18
N12 C19 C19 C 0 1 N N N N N N 14.463 22.308 20.038 6.069 -6.412 -6.835 C19 N12 19
N12 C20 C20 C 0 1 Y N N N N N 13.520 22.249 21.225 4.768 -6.226 -7.560 C20 N12 20
N12 C21 C21 C 0 1 Y N N N N N 12.919 21.027 21.614 3.993 -7.319 -7.906 C21 N12 21
N12 C22 C22 C 0 1 Y N N N N N 12.035 21.008 22.718 2.793 -7.115 -8.577 C22 N12 22
N12 C23 C23 C 0 1 Y N N N N N 11.757 22.225 23.393 2.427 -5.811 -8.870 C23 N12 23
N12 N24 N24 N 0 1 Y N N N N N 12.357 23.369 22.989 3.164 -4.727 -8.543 N24 N12 24
N12 C25 C25 C 0 1 Y N N N N N 13.199 23.419 21.944 4.325 -4.964 -7.892 C25 N12 25
N12 O26 O26 O 0 1 N N N N N N 13.289 16.312 22.189 -0.654 -6.673 -0.542 O26 N12 26
N12 O27 O27 O 0 1 N N N N N N 13.969 15.396 23.985 0.998 -7.002 0.987 O27 N12 27
N12 C28 C28 C 0 1 N N N N N N 10.821 22.258 24.563 1.183 -5.539 -9.569 C28 N12 28
N12 N29 N29 N 0 1 N N N N N N 10.598 23.401 25.203 0.879 -4.283 -9.825 N29 N12 29
N12 N30 N30 N 0 1 N N N N N N 10.197 21.155 24.974 0.286 -6.516 -9.991 N30 N12 30
N12 C31 C31 C 0 1 N N N N N N 18.603 20.088 19.384 5.223 -8.554 -2.377 C31 N12 31
N12 C32 C32 C 0 1 N N N N N N 18.561 21.615 21.275 6.806 -6.692 -2.625 C32 N12 32
N12 C33 C33 C 0 1 N N N N N N 20.004 20.725 19.531 6.557 -8.898 -1.726 C33 N12 33
N12 C34 C34 C 0 1 N N N N N N 20.049 21.306 20.971 7.140 -7.535 -1.397 C34 N12 34
N12 H21A 1H2 H 0 0 N N N N N N 16.204 15.492 22.409 2.198 -5.410 -0.693 H21A N12 35
N12 H22A 2H2 H 0 0 N N N N N N 15.618 17.056 21.737 2.348 -7.109 -1.261 H22A N12 36
N12 HN3 HN3 H 0 1 N N N N N N 15.568 17.813 24.026 0.630 -6.672 -2.829 HN3 N12 37
N12 H4 H4 H 0 1 N N N N N N 18.206 17.172 22.993 2.713 -4.633 -2.832 H4 N12 38
N12 H61 1H6 H 0 1 N N N N N N 17.426 18.714 25.522 2.445 -4.686 -5.339 H61 N12 39
N12 H62 2H6 H 0 1 N N N N N N 18.362 17.157 25.428 1.116 -5.826 -5.183 H62 N12 40
N12 H7 H7 H 0 1 N N N N N N 19.290 19.747 24.122 -0.148 -4.138 -3.866 H7 N12 41
N12 H81 1H8 H 0 1 N N N N N N 19.082 20.059 26.598 2.224 -2.333 -4.567 H81 N12 42
N12 H82 2H8 H 0 1 N N N N N N 20.047 18.556 26.857 1.735 -2.841 -2.952 H82 N12 43
N12 H91 1H9 H 0 1 N N N N N N 21.505 20.549 27.090 0.964 -0.530 -3.488 H91 N12 44
N12 H92 2H9 H 0 1 N N N N N N 21.008 21.116 25.447 -0.378 -1.614 -3.131 H92 N12 45
N12 H101 1H10 H 0 0 N N N N N N 22.564 18.552 26.117 -0.932 -0.254 -5.095 H101 N12 46
N12 H102 2H10 H 0 0 N N N N N N 23.200 20.028 25.289 0.564 -0.721 -5.899 H102 N12 47
N12 H111 1H11 H 0 0 N N N N N N 22.665 18.165 23.674 -1.782 -2.551 -5.199 H111 N12 48
N12 H112 2H11 H 0 0 N N N N N N 21.686 19.651 23.380 -1.292 -2.037 -6.811 H112 N12 49
N12 H121 1H12 H 0 0 N N N N N N 20.260 17.606 23.247 -0.531 -4.354 -6.288 H121 N12 50
N12 H122 2H12 H 0 0 N N N N N N 20.749 17.152 24.915 0.815 -3.274 -6.640 H122 N12 51
N12 HN14 HN14 H 0 0 N N N N N N 18.573 18.506 21.326 4.604 -5.429 -2.661 HN14 N12 52
N12 HN18 HN18 H 0 0 N N N N N N 16.477 22.734 20.691 5.962 -5.505 -4.915 HN18 N12 53
N12 H191 1H19 H 0 0 N N N N N N 14.431 23.326 19.622 6.530 -7.368 -7.107 H191 N12 54
N12 H192 2H19 H 0 0 N N N N N N 14.130 21.549 19.315 6.781 -5.622 -7.095 H192 N12 55
N12 H21 H21 H 0 1 N N N N N N 13.134 20.118 21.072 4.308 -8.330 -7.660 H21 N12 56
N12 H22 H22 H 0 1 N N N N N N 11.580 20.084 23.042 2.170 -7.958 -8.857 H22 N12 57
N12 H25 H25 H 0 1 N N N N N N 13.634 24.363 21.652 4.898 -4.075 -7.644 H25 N12 58
N12 HO27 HO27 H 0 0 N N N N N N 13.037 15.223 24.044 0.273 -7.266 1.593 HO27 N12 59
N12 HN29 HN29 H 0 0 N N N N N N 11.138 24.122 24.768 1.618 -3.669 -9.464 HN29 N12 60
N12 H301 1H30 H 0 0 N N N N N N 9.624 21.386 25.760 -0.573 -6.275 -10.474 H301 N12 61
N12 H302 2H30 H 0 0 N N N N N N 10.287 20.247 24.565 0.456 -7.504 -9.844 H302 N12 62
N12 H311 1H31 H 0 0 N N N N N N 18.082 20.513 18.513 4.863 -9.380 -3.000 H311 N12 63
N12 H312 2H31 H 0 0 N N N N N N 18.683 19.002 19.229 4.474 -8.380 -1.594 H312 N12 64
N12 H321 1H32 H 0 0 N N N N N N 18.238 22.557 20.809 6.730 -5.632 -2.356 H321 N12 65
N12 H322 2H32 H 0 0 N N N N N N 18.360 21.754 22.347 7.621 -6.785 -3.354 H322 N12 66
N12 H331 1H33 H 0 0 N N N N N N 20.792 19.971 19.389 7.202 -9.427 -2.437 H331 N12 67
N12 H332 2H33 H 0 0 N N N N N N 20.177 21.504 18.774 6.436 -9.525 -0.838 H332 N12 68
N12 H341 1H34 H 0 0 N N N N N N 20.467 20.583 21.687 6.649 -7.117 -0.510 H341 N12 69
N12 H342 2H34 H 0 0 N N N N N N 20.697 22.191 21.056 8.216 -7.577 -1.204 H342 N12 70
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
N12 C1 O26 DOUB N N 1
N12 C1 C2 SING N N 2
N12 C1 O27 SING N N 3
N12 C2 N3 SING N N 4
N12 C2 H21A SING N N 5
N12 C2 H22A SING N N 6
N12 N3 C4 SING N N 7
N12 N3 HN3 SING N N 8
N12 C4 C5 SING N N 9
N12 C4 C6 SING N N 10
N12 C4 H4 SING N N 11
N12 C5 N14 SING N N 12
N12 C5 O13 DOUB N N 13
N12 C6 C7 SING N N 14
N12 C6 H61 SING N N 15
N12 C6 H62 SING N N 16
N12 C7 C12 SING N N 17
N12 C7 C8 SING N N 18
N12 C7 H7 SING N N 19
N12 C8 C9 SING N N 20
N12 C8 H81 SING N N 21
N12 C8 H82 SING N N 22
N12 C9 C10 SING N N 23
N12 C9 H91 SING N N 24
N12 C9 H92 SING N N 25
N12 C10 C11 SING N N 26
N12 C10 H101 SING N N 27
N12 C10 H102 SING N N 28
N12 C11 C12 SING N N 29
N12 C11 H111 SING N N 30
N12 C11 H112 SING N N 31
N12 C12 H121 SING N N 32
N12 C12 H122 SING N N 33
N12 N14 C15 SING N N 34
N12 N14 HN14 SING N N 35
N12 C15 C31 SING N N 36
N12 C15 C16 SING N N 37
N12 C15 C32 SING N N 38
N12 C16 O17 DOUB N N 39
N12 C16 N18 SING N N 40
N12 N18 C19 SING N N 41
N12 N18 HN18 SING N N 42
N12 C19 C20 SING N N 43
N12 C19 H191 SING N N 44
N12 C19 H192 SING N N 45
N12 C20 C21 DOUB Y N 46
N12 C20 C25 SING Y N 47
N12 C21 C22 SING Y N 48
N12 C21 H21 SING N N 49
N12 C22 C23 DOUB Y N 50
N12 C22 H22 SING N N 51
N12 C23 N24 SING Y N 52
N12 C23 C28 SING N N 53
N12 N24 C25 DOUB Y N 54
N12 C25 H25 SING N N 55
N12 O27 HO27 SING N N 56
N12 C28 N30 SING N N 57
N12 C28 N29 DOUB N E 58
N12 N29 HN29 SING N N 59
N12 N30 H301 SING N N 60
N12 N30 H302 SING N N 61
N12 C31 C33 SING N N 62
N12 C31 H311 SING N N 63
N12 C31 H312 SING N N 64
N12 C32 C34 SING N N 65
N12 C32 H321 SING N N 66
N12 C32 H322 SING N N 67
N12 C33 C34 SING N N 68
N12 C33 H331 SING N N 69
N12 C33 H332 SING N N 70
N12 C34 H341 SING N N 71
N12 C34 H342 SING N N 72
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
N12 SMILES ACDLabs 10.04 O=C(O)CNC(C(=O)NC2(C(=O)NCc1cnc(C(=[N@H])N)cc1)CCCC2)CC3CCCCC3
N12 SMILES_CANONICAL CACTVS 3.341 NC(=N)c1ccc(CNC(=O)C2(CCCC2)NC(=O)[C@@H](CC3CCCCC3)NCC(O)=O)cn1
N12 SMILES CACTVS 3.341 NC(=N)c1ccc(CNC(=O)C2(CCCC2)NC(=O)[CH](CC3CCCCC3)NCC(O)=O)cn1
N12 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "[H]/N=C(\c1ccc(cn1)CNC(=O)C2(CCCC2)NC(=O)[C@@H](CC3CCCCC3)NCC(=O)O)/N"
N12 SMILES "OpenEye OEToolkits" 1.5.0 "[H]N=C(c1ccc(cn1)CNC(=O)C2(CCCC2)NC(=O)C(CC3CCCCC3)NCC(=O)O)N"
N12 InChI InChI 1.03 InChI=1S/C24H36N6O4/c25-21(26)18-9-8-17(13-27-18)14-29-23(34)24(10-4-5-11-24)30-22(33)19(28-15-20(31)32)12-16-6-2-1-3-7-16/h8-9,13,16,19,28H,1-7,10-12,14-15H2,(H3,25,26)(H,29,34)(H,30,33)(H,31,32)/t19-/m1/s1
N12 InChIKey InChI 1.03 OYDOPLZDDBTLCK-LJQANCHMSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
N12 "SYSTEMATIC NAME" ACDLabs 10.04 N-[(1R)-2-[(1-{[(6-carbamimidoylpyridin-3-yl)methyl]carbamoyl}cyclopentyl)amino]-1-(cyclohexylmethyl)-2-oxoethyl]glycine
N12 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[[(2R)-1-[[1-[(6-carbamimidoylpyridin-3-yl)methylcarbamoyl]cyclopentyl]amino]-3-cyclohexyl-1-oxo-propan-2-yl]amino]ethanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
N12 'Create component' 2006-10-30 RCSB
N12 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
N12 C1 C 20.216 1.027 1
N12 C2 C 18.789 0.564 2
N12 N3 N 17.675 1.567 3
N12 C4 C 16.248 1.104 4
N12 C5 C 15.936 -0.363 5
N12 C6 C 15.133 2.107 6
N12 C7 C 15.445 3.575 7
N12 C8 C 14.330 4.579 8
N12 C9 C 14.642 6.046 9
N12 C10 C 16.069 6.509 10
N12 C11 C 17.184 5.505 11
N12 C12 C 16.872 4.038 12
N12 O13 O 17.051 -1.367 13
N12 N14 N 14.509 -0.827 14
N12 C15 C 14.198 -2.294 15
N12 C16 C 12.899 -1.544 16
N12 O17 O 12.899 -0.044 17
N12 N18 N 11.600 -2.294 18
N12 C19 C 10.301 -1.544 19
N12 C20 C 9.002 -2.294 20
N12 C21 C 7.702 -1.544 21
N12 C22 C 6.404 -2.294 22
N12 C23 C 6.404 -3.794 23
N12 N24 N 7.702 -4.544 24
N12 C25 C 9.002 -3.794 25
N12 O26 O 21.331 0.023 26
N12 O27 O 20.528 2.494 27
N12 C28 C 5.104 -4.544 28
N12 N29 N 5.104 -6.044 29
N12 N30 N 3.805 -3.794 30
N12 C31 C 13.448 -3.593 31
N12 C32 C 15.665 -2.606 32
N12 C33 C 14.451 -4.708 33
N12 C34 C 15.822 -4.098 34
N12 HN29 H 6.404 -6.794 35
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
N12 C1 O26 DOUBLE NONE 1
N12 C1 C2 SINGLE NONE 2
N12 C1 O27 SINGLE NONE 3
N12 C2 N3 SINGLE NONE 4
N12 N3 C4 SINGLE NONE 5
N12 C4 C5 SINGLE NONE 6
N12 C4 C6 SINGLE BEGINWEDGE 7
N12 C5 N14 SINGLE NONE 8
N12 C5 O13 DOUBLE NONE 9
N12 C6 C7 SINGLE NONE 10
N12 C7 C12 SINGLE NONE 11
N12 C7 C8 SINGLE NONE 12
N12 C8 C9 SINGLE NONE 13
N12 C9 C10 SINGLE NONE 14
N12 C10 C11 SINGLE NONE 15
N12 C11 C12 SINGLE NONE 16
N12 N14 C15 SINGLE NONE 17
N12 C15 C31 SINGLE NONE 18
N12 C15 C16 SINGLE NONE 19
N12 C15 C32 SINGLE NONE 20
N12 C16 O17 DOUBLE NONE 21
N12 C16 N18 SINGLE NONE 22
N12 N18 C19 SINGLE NONE 23
N12 C19 C20 SINGLE NONE 24
N12 C20 C21 DOUBLE NONE 25
N12 C20 C25 SINGLE NONE 26
N12 C21 C22 SINGLE NONE 27
N12 C22 C23 DOUBLE NONE 28
N12 C23 N24 SINGLE NONE 29
N12 C23 C28 SINGLE ENDUPRIGHT 30
N12 N24 C25 DOUBLE NONE 31
N12 C28 N30 SINGLE ENDUPRIGHT 32
N12 C28 N29 DOUBLE NONE 33
N12 C31 C33 SINGLE NONE 34
N12 C32 C34 SINGLE NONE 35
N12 C33 C34 SINGLE NONE 36
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
N12 MurckoScaffold S1 scaffold O=C(CCC1CCCCC1)NC1(C(=O)NCc2cccnc2)CCCC1 InChI=1S/C21H31N3O2/c25-19(11-10-17-7-2-1-3-8-17)24-21(12-4-5-13-21)20(26)23-16-18-9-6-14-22-15-18/h6,9,14-15,17H,1-5,7-8,10-13,16H2,(H,23,26)(H,24,25) WCUZWZAOSWUTTN-UHFFFAOYSA-N
N12 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
N12 cyclohexane F2 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
N12 cyclopentane F3 fragment C1CCCC1 InChI=1S/C5H10/c1-2-4-5-3-1/h1-5H2 RGSFGYAAUTVSQA-UHFFFAOYSA-N
N12 peptide F4 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
N12 pyridine F5 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
N12 Z2856434901 F6 fragment CNCCC1CCCCC1 InChI=1S/C9H19N/c1-10-8-7-9-5-3-2-4-6-9/h9-10H,2-8H2,1H3 KCYFTGSOYOWCJF-UHFFFAOYSA-N
N12 Z1348559502 F7 fragment CNC1(C(N)=O)CCCC1 InChI=1S/C7H14N2O/c1-9-7(6(8)10)4-2-3-5-7/h9H,2-5H2,1H3,(H2,8,10) OESOTMQEPBMDID-UHFFFAOYSA-N
N12 Z32016974 F8 fragment CNC(=O)CCC1CCCCC1 InChI=1S/C10H19NO/c1-11-10(12)8-7-9-5-3-2-4-6-9/h9H,2-8H2,1H3,(H,11,12) NKQAGLASNCWFIR-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
N12 C4 S1 1
N12 C5 S1 1
N12 C6 S1 1
N12 C7 S1 1
N12 C8 S1 1
N12 C9 S1 1
N12 C10 S1 1
N12 C11 S1 1
N12 C12 S1 1
N12 O13 S1 1
N12 N14 S1 1
N12 C15 S1 1
N12 C16 S1 1
N12 O17 S1 1
N12 N18 S1 1
N12 C19 S1 1
N12 C20 S1 1
N12 C21 S1 1
N12 C22 S1 1
N12 C23 S1 1
N12 N24 S1 1
N12 C25 S1 1
N12 C31 S1 1
N12 C32 S1 1
N12 C33 S1 1
N12 C34 S1 1
N12 N14 F1 1
N12 C5 F1 1
N12 O13 F1 1
N12 C4 F1 1
N12 N18 F1 2
N12 C16 F1 2
N12 O17 F1 2
N12 C15 F1 2
N12 C7 F2 1
N12 C12 F2 1
N12 C11 F2 1
N12 C10 F2 1
N12 C9 F2 1
N12 C8 F2 1
N12 C15 F3 1
N12 C31 F3 1
N12 C33 F3 1
N12 C34 F3 1
N12 C32 F3 1
N12 O13 F4 1
N12 C5 F4 1
N12 C4 F4 1
N12 N3 F4 1
N12 O17 F4 2
N12 C16 F4 2
N12 C15 F4 2
N12 N14 F4 2
N12 O26 F4 3
N12 C1 F4 3
N12 C2 F4 3
N12 N3 F4 3
N12 C23 F5 1
N12 C22 F5 1
N12 C21 F5 1
N12 C20 F5 1
N12 C25 F5 1
N12 N24 F5 1
N12 C2 F6 1
N12 N3 F6 1
N12 C4 F6 1
N12 C6 F6 1
N12 C7 F6 1
N12 C12 F6 1
N12 C11 F6 1
N12 C10 F6 1
N12 C9 F6 1
N12 C8 F6 1
N12 C5 F7 1
N12 N14 F7 1
N12 C15 F7 1
N12 C31 F7 1
N12 C33 F7 1
N12 C34 F7 1
N12 C32 F7 1
N12 C16 F7 1
N12 O17 F7 1
N12 N18 F7 1
N12 C15 F8 1
N12 N14 F8 1
N12 C5 F8 1
N12 O13 F8 1
N12 C4 F8 1
N12 C6 F8 1
N12 C7 F8 1
N12 C12 F8 1
N12 C11 F8 1
N12 C10 F8 1
N12 C9 F8 1
N12 C8 F8 1
#
_pdbe_chem_comp_rdkit_properties.comp_id N12
_pdbe_chem_comp_rdkit_properties.exactmw 472.280
_pdbe_chem_comp_rdkit_properties.amw 472.590
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 34
_pdbe_chem_comp_rdkit_properties.NumAtoms 70
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.625
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 1
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 250.541
_pdbe_chem_comp_rdkit_properties.tpsa 170.290
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.315
_pdbe_chem_comp_rdkit_properties.CrippenMR 126.528
_pdbe_chem_comp_rdkit_properties.chi0v 16.316
_pdbe_chem_comp_rdkit_properties.chi1v 8.553
_pdbe_chem_comp_rdkit_properties.chi2v 3.399
_pdbe_chem_comp_rdkit_properties.chi3v 3.399
_pdbe_chem_comp_rdkit_properties.chi4v 1.988
_pdbe_chem_comp_rdkit_properties.chi0n 52.316
_pdbe_chem_comp_rdkit_properties.chi1n 26.144
_pdbe_chem_comp_rdkit_properties.chi2n 3.399
_pdbe_chem_comp_rdkit_properties.chi3n 3.399
_pdbe_chem_comp_rdkit_properties.chi4n 1.988
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.010
_pdbe_chem_comp_rdkit_properties.kappa1 5.856
_pdbe_chem_comp_rdkit_properties.kappa2 11.916
_pdbe_chem_comp_rdkit_properties.kappa3 6.993
_pdbe_chem_comp_rdkit_properties.Phi 2.052
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
N12 UniChem ChEMBL CHEMBL207788
N12 UniChem PDBe N12
N12 UniChem ZINC ZINC000016051780
N12 UniChem PubChem 11963489
N12 UniChem BindingDb 50182191
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
N12 C1 -3.901 -1.801 -2.231 ETKDGv3 1
N12 C2 -3.339 -1.946 -0.853 ETKDGv3 2
N12 N3 -3.393 -0.679 -0.098 ETKDGv3 3
N12 C4 -2.451 0.390 -0.511 ETKDGv3 4
N12 C5 -1.102 -0.137 -0.959 ETKDGv3 5
N12 C6 -3.082 1.354 -1.551 ETKDGv3 6
N12 C7 -4.347 2.138 -1.106 ETKDGv3 7
N12 C8 -4.206 2.809 0.277 ETKDGv3 8
N12 C9 -5.434 3.676 0.586 ETKDGv3 9
N12 C10 -6.722 2.845 0.517 ETKDGv3 10
N12 C11 -6.866 2.159 -0.848 ETKDGv3 11
N12 C12 -5.638 1.296 -1.168 ETKDGv3 12
N12 O13 -0.803 -0.147 -2.185 ETKDGv3 13
N12 N14 -0.186 -0.661 0.021 ETKDGv3 14
N12 C15 1.150 -1.217 -0.280 ETKDGv3 15
N12 C16 1.877 -1.505 1.031 ETKDGv3 16
N12 O17 2.417 -2.627 1.238 ETKDGv3 17
N12 N18 2.008 -0.464 2.012 ETKDGv3 18
N12 C19 2.853 -0.606 3.195 ETKDGv3 19
N12 C20 4.303 -0.561 2.799 ETKDGv3 20
N12 C21 5.078 -1.654 2.858 ETKDGv3 21
N12 C22 6.488 -1.585 2.428 ETKDGv3 22
N12 C23 6.987 -0.426 1.958 ETKDGv3 23
N12 N24 6.133 0.734 1.909 ETKDGv3 24
N12 C25 4.889 0.698 2.289 ETKDGv3 25
N12 O26 -5.147 -1.725 -2.398 ETKDGv3 26
N12 O27 -3.047 -1.754 -3.328 ETKDGv3 27
N12 C28 8.398 -0.291 1.518 ETKDGv3 28
N12 N29 9.068 -1.301 1.052 ETKDGv3 29
N12 N30 9.030 0.990 1.562 ETKDGv3 30
N12 C31 1.018 -2.484 -1.157 ETKDGv3 31
N12 C32 2.009 -0.227 -1.108 ETKDGv3 32
N12 C33 2.171 -2.422 -2.141 ETKDGv3 33
N12 C34 2.390 -0.943 -2.400 ETKDGv3 34
N12 H21A -2.312 -2.365 -0.889 ETKDGv3 35
N12 H22A -3.955 -2.702 -0.318 ETKDGv3 36
N12 HN3 -3.195 -0.911 0.904 ETKDGv3 37
N12 H4 -2.221 1.008 0.383 ETKDGv3 38
N12 H61 -3.303 0.813 -2.494 ETKDGv3 39
N12 H62 -2.309 2.112 -1.812 ETKDGv3 40
N12 H7 -4.467 2.955 -1.854 ETKDGv3 41
N12 H81 -3.296 3.448 0.294 ETKDGv3 42
N12 H82 -4.113 2.041 1.074 ETKDGv3 43
N12 H91 -5.331 4.107 1.605 ETKDGv3 44
N12 H92 -5.492 4.518 -0.138 ETKDGv3 45
N12 H101 -7.596 3.509 0.688 ETKDGv3 46
N12 H102 -6.714 2.076 1.321 ETKDGv3 47
N12 H111 -7.774 1.517 -0.841 ETKDGv3 48
N12 H112 -6.999 2.929 -1.640 ETKDGv3 49
N12 H121 -5.759 0.873 -2.188 ETKDGv3 50
N12 H122 -5.599 0.457 -0.442 ETKDGv3 51
N12 HN14 -0.528 -0.690 1.009 ETKDGv3 52
N12 HN18 1.537 0.455 1.849 ETKDGv3 53
N12 H191 2.650 0.234 3.893 ETKDGv3 54
N12 H192 2.597 -1.547 3.730 ETKDGv3 55
N12 H21 4.683 -2.597 3.216 ETKDGv3 56
N12 H22 7.100 -2.472 2.525 ETKDGv3 57
N12 H25 4.286 1.594 2.228 ETKDGv3 58
N12 HO27 -3.414 -1.650 -4.267 ETKDGv3 59
N12 HN29 8.670 -2.260 0.949 ETKDGv3 60
N12 H301 8.534 1.824 1.946 ETKDGv3 61
N12 H302 10.013 1.106 1.228 ETKDGv3 62
N12 H311 1.028 -3.434 -0.581 ETKDGv3 63
N12 H312 0.070 -2.478 -1.734 ETKDGv3 64
N12 H321 1.473 0.720 -1.333 ETKDGv3 65
N12 H322 2.944 0.062 -0.576 ETKDGv3 66
N12 H331 3.082 -2.860 -1.677 ETKDGv3 67
N12 H332 1.935 -2.968 -3.080 ETKDGv3 68
N12 H341 1.724 -0.608 -3.226 ETKDGv3 69
N12 H342 3.446 -0.740 -2.683 ETKDGv3 70
#