data_N1W
#
_chem_comp.id N1W
_chem_comp.name
'(2~{R})-2-[[(1~{S})-1-[(6~{S})-2-azanyl-1,4,5,6-tetrahydropyrimidin-6-yl]-2-[[(2~{S})-3-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-phenyl-propan-2-yl]amino]butan-2-yl]amino]-2-oxidanylidene-ethyl]carbamoylamino]-3-(4-hydroxyphenyl)propanoic acid'
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C30 H41 N7 O7'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-11-06
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 611.689
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code N1W
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6TCX
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
N1W C8 C1 C 0 1 Y N N N N N 20.968 -14.480 20.308 -7.107 -2.455 -0.046 C8 N1W 1
N1W C5 C2 C 0 1 Y N N N N N 23.314 -15.649 19.441 -5.708 -2.690 2.327 C5 N1W 2
N1W C6 C3 C 0 1 Y N N N N N 23.171 -15.307 20.771 -5.911 -3.802 1.532 C6 N1W 3
N1W O6 O1 O 0 1 N N N N N N 21.750 -3.579 24.600 4.620 3.819 -0.233 O6 N1W 4
N1W N1 N1 N 0 1 N N N N N N 21.400 -9.963 21.030 -1.599 1.182 -0.179 N1 N1W 5
N1W C2 C4 C 0 1 N N N N N N 19.989 -14.528 17.982 -7.452 -0.004 0.326 C2 N1W 6
N1W N2 N2 N 0 1 N N N N N N 22.760 -8.536 23.981 1.975 0.774 0.366 N2 N1W 7
N1W N3 N3 N 0 1 N N N N N N 22.138 -6.794 25.318 4.244 1.318 0.456 N3 N1W 8
N1W C4 C5 C 0 1 Y N N N N N 22.287 -15.402 18.543 -6.216 -1.463 1.942 C4 N1W 9
N1W C22 C6 C 0 1 N N N N N N 21.926 -4.353 25.520 5.544 3.106 -0.545 C22 N1W 10
N1W O5 O2 O 0 1 N N N N N N 21.338 -4.259 26.685 6.610 3.625 -1.175 O5 N1W 11
N1W C14 C7 C 0 1 N N R N N N 22.869 -5.540 25.412 5.501 1.633 -0.228 C14 N1W 12
N1W C15 C8 C 0 1 N N N N N N 23.861 -5.560 26.589 6.679 1.272 0.680 C15 N1W 13
N1W C16 C9 C 0 1 Y N N N N N 25.211 -4.989 26.231 6.707 -0.219 0.898 C16 N1W 14
N1W C21 C10 C 0 1 Y N N N N N 25.341 -3.663 25.840 6.013 -0.774 1.957 C21 N1W 15
N1W C20 C11 C 0 1 Y N N N N N 26.567 -3.146 25.461 6.032 -2.141 2.155 C20 N1W 16
N1W C19 C12 C 0 1 Y N N N N N 27.693 -3.957 25.472 6.749 -2.957 1.291 C19 N1W 17
N1W O4 O3 O 0 1 N N N N N N 28.902 -3.459 25.082 6.769 -4.302 1.485 O4 N1W 18
N1W C18 C13 C 0 1 Y N N N N N 27.581 -5.281 25.873 7.444 -2.397 0.229 C18 N1W 19
N1W C17 C14 C 0 1 Y N N N N N 26.348 -5.786 26.249 7.421 -1.029 0.035 C17 N1W 20
N1W C13 C15 C 0 1 N N N N N N 21.987 -7.430 24.131 3.132 1.064 -0.262 C13 N1W 21
N1W O3 O4 O 0 1 N N N N N N 21.214 -7.034 23.261 3.172 1.097 -1.477 O3 N1W 22
N1W C12 C16 C 0 1 N N S N N N 22.994 -9.149 22.682 0.767 0.498 -0.414 C12 N1W 23
N1W C23 C17 C 0 1 N N S N N N 24.312 -9.945 22.646 0.747 -0.978 -0.818 C23 N1W 24
N1W N6 N4 N 0 1 N N N N N N 24.151 -11.215 23.364 -0.445 -1.256 -1.634 N6 N1W 25
N1W C26 C18 C 0 1 N N N N N N 24.806 -12.353 23.067 -0.467 -2.394 -2.405 C26 N1W 26
N1W N5 N5 N 0 1 N N N N N N 24.523 -13.369 23.804 -1.659 -2.801 -2.955 N5 N1W 27
N1W N4 N6 N 0 1 N N N N N N 25.686 -12.351 22.051 0.596 -3.095 -2.632 N4 N1W 28
N1W C25 C19 C 0 1 N N N N N N 25.983 -11.171 21.248 1.910 -2.773 -2.088 C25 N1W 29
N1W C24 C20 C 0 1 N N N N N N 24.789 -10.237 21.224 1.977 -1.300 -1.679 C24 N1W 30
N1W C11 C21 C 0 1 N N N N N N 21.835 -10.065 22.291 -0.451 0.807 0.419 C11 N1W 31
N1W O2 O5 O 0 1 N N N N N N 21.364 -10.856 23.105 -0.397 0.718 1.628 O2 N1W 32
N1W C10 C22 C 0 1 N N S N N N 20.203 -10.634 20.550 -2.807 1.393 0.623 C10 N1W 33
N1W C27 C23 C 0 1 N N N N N N 18.978 -9.699 20.574 -2.805 2.817 1.183 C27 N1W 34
N1W C29 C24 C 0 1 N N N N N N 18.606 -9.282 21.994 -1.653 2.972 2.178 C29 N1W 35
N1W C28 C25 C 0 1 N N N N N N 19.185 -8.476 19.690 -2.628 3.816 0.038 C28 N1W 36
N1W C9 C26 C 0 1 N N N N N N 20.438 -11.200 19.150 -4.024 1.196 -0.243 C9 N1W 37
N1W O1 O6 O 0 1 N N N N N N 21.287 -10.710 18.413 -3.915 1.186 -1.451 O1 N1W 38
N1W N N7 N 0 1 N N N N N N 19.660 -12.228 18.793 -5.235 1.029 0.325 N N1W 39
N1W C1 C27 C 0 1 N N S N N N 19.874 -13.046 17.598 -6.401 0.728 -0.510 C1 N1W 40
N1W C C28 C 0 1 N N N N N N 18.736 -12.785 16.626 -6.995 2.032 -1.046 C N1W 41
N1W O O7 O 0 1 N N N N N N 18.937 -13.412 15.369 -7.499 2.809 0.042 O N1W 42
N1W C3 C29 C 0 1 Y N N N N N 21.100 -14.812 18.964 -6.910 -1.344 0.753 C3 N1W 43
N1W C7 C30 C 0 1 Y N N N N N 21.998 -14.723 21.203 -6.610 -3.685 0.345 C7 N1W 44
N1W H1 H1 H 0 1 N N N N N N 20.052 -14.028 20.658 -7.654 -2.364 -0.973 H1 N1W 45
N1W H2 H2 H 0 1 N N N N N N 24.229 -16.110 19.099 -5.162 -2.781 3.254 H2 N1W 46
N1W H3 H3 H 0 1 N N N N N N 23.973 -15.496 21.469 -5.514 -4.760 1.832 H3 N1W 47
N1W H4 H4 H 0 1 N N N N N N 21.922 -9.400 20.389 -1.625 1.313 -1.140 H4 N1W 48
N1W H5 H5 H 0 1 N N N N N N 19.037 -14.846 18.432 -7.691 0.588 1.209 H5 N1W 49
N1W H6 H6 H 0 1 N N N N N N 20.175 -15.111 17.068 -8.353 -0.150 -0.269 H6 N1W 50
N1W H7 H7 H 0 1 N N N N N N 23.183 -8.943 24.791 1.944 0.748 1.336 H7 N1W 51
N1W H8 H8 H 0 1 N N N N N N 21.740 -7.194 26.144 4.212 1.292 1.425 H8 N1W 52
N1W H9 H9 H 0 1 N N N N N N 22.410 -15.671 17.504 -6.062 -0.595 2.566 H9 N1W 53
N1W H10 H10 H 0 1 N N N N N N 20.764 -3.502 26.690 6.592 4.575 -1.358 H10 N1W 54
N1W H11 H11 H 0 1 N N N N N N 23.457 -5.413 24.491 5.565 1.060 -1.152 H11 N1W 55
N1W H12 H12 H 0 1 N N N N N N 23.438 -4.969 27.414 7.610 1.588 0.209 H12 N1W 56
N1W H13 H13 H 0 1 N N N N N N 23.996 -6.602 26.916 6.567 1.778 1.639 H13 N1W 57
N1W H14 H14 H 0 1 N N N N N N 24.470 -3.024 25.832 5.455 -0.139 2.629 H14 N1W 58
N1W H15 H15 H 0 1 N N N N N N 26.648 -2.113 25.157 5.491 -2.575 2.983 H15 N1W 59
N1W H16 H16 H 0 1 N N N N N N 29.562 -4.139 25.149 6.061 -4.775 1.028 H16 N1W 60
N1W H17 H17 H 0 1 N N N N N N 28.454 -5.916 25.892 8.002 -3.029 -0.444 H17 N1W 61
N1W H18 H18 H 0 1 N N N N N N 26.269 -6.817 26.561 7.959 -0.593 -0.794 H18 N1W 62
N1W H19 H19 H 0 1 N N N N N N 23.064 -8.354 21.925 0.762 1.120 -1.309 H19 N1W 63
N1W H20 H20 H 0 1 N N N N N N 25.085 -9.346 23.150 0.741 -1.606 0.072 H20 N1W 64
N1W H21 H21 H 0 1 N N N N N N 23.508 -11.236 24.130 -1.202 -0.649 -1.628 H21 N1W 65
N1W H22 H22 H 0 1 N N N N N N 24.973 -14.247 23.640 -2.467 -2.288 -2.796 H22 N1W 66
N1W H23 H23 H 0 1 N N N N N N 23.853 -13.281 24.541 -1.694 -3.601 -3.502 H23 N1W 67
N1W H24 H24 H 0 1 N N N N N N 26.221 -11.482 20.220 2.100 -3.397 -1.215 H24 N1W 68
N1W H25 H25 H 0 1 N N N N N N 26.847 -10.645 21.681 2.670 -2.971 -2.843 H25 N1W 69
N1W H26 H26 H 0 1 N N N N N N 25.077 -9.293 20.737 1.976 -0.672 -2.570 H26 N1W 70
N1W H27 H27 H 0 1 N N N N N N 23.972 -10.708 20.657 2.885 -1.121 -1.102 H27 N1W 71
N1W H28 H28 H 0 1 N N N N N N 19.985 -11.480 21.218 -2.826 0.678 1.445 H28 N1W 72
N1W H29 H29 H 0 1 N N N N N N 18.128 -10.264 20.163 -3.751 3.009 1.690 H29 N1W 73
N1W H30 H30 H 0 1 N N N N N N 18.461 -10.179 22.614 -0.703 2.880 1.651 H30 N1W 74
N1W H31 H31 H 0 1 N N N N N N 19.414 -8.669 22.419 -1.712 3.951 2.653 H31 N1W 75
N1W H32 H32 H 0 1 N N N N N N 17.674 -8.697 21.972 -1.722 2.194 2.938 H32 N1W 76
N1W H33 H33 H 0 1 N N N N N N 18.292 -7.836 19.734 -3.449 3.705 -0.670 H33 N1W 77
N1W H34 H34 H 0 1 N N N N N N 20.059 -7.911 20.045 -2.627 4.830 0.438 H34 N1W 78
N1W H35 H35 H 0 1 N N N N N N 19.354 -8.798 18.652 -1.683 3.624 -0.469 H35 N1W 79
N1W H36 H36 H 0 1 N N N N N N 18.882 -12.452 19.380 -5.335 1.109 1.286 H36 N1W 80
N1W H37 H37 H 0 1 N N N N N N 20.816 -12.742 17.118 -6.097 0.097 -1.345 H37 N1W 81
N1W H38 H38 H 0 1 N N N N N N 18.649 -11.700 16.468 -6.221 2.596 -1.567 H38 N1W 82
N1W H39 H39 H 0 1 N N N N N N 17.803 -13.168 17.065 -7.806 1.805 -1.738 H39 N1W 83
N1W H40 H40 H 0 1 N N N N N N 18.202 -13.221 14.798 -7.891 3.652 -0.225 H40 N1W 84
N1W H41 H41 H 0 1 N N N N N N 21.882 -14.454 22.243 -6.768 -4.554 -0.277 H41 N1W 85
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
N1W O C SING N N 1
N1W C C1 SING N N 2
N1W C1 C2 SING N N 3
N1W C1 N SING N N 4
N1W C2 C3 SING N N 5
N1W O1 C9 DOUB N N 6
N1W C4 C3 DOUB Y N 7
N1W C4 C5 SING Y N 8
N1W N C9 SING N N 9
N1W C3 C8 SING Y N 10
N1W C9 C10 SING N N 11
N1W C5 C6 DOUB Y N 12
N1W C28 C27 SING N N 13
N1W C8 C7 DOUB Y N 14
N1W C10 C27 SING N N 15
N1W C10 N1 SING N N 16
N1W C27 C29 SING N N 17
N1W C6 C7 SING Y N 18
N1W N1 C11 SING N N 19
N1W C24 C25 SING N N 20
N1W C24 C23 SING N N 21
N1W C25 N4 SING N N 22
N1W N4 C26 DOUB N N 23
N1W C11 C12 SING N N 24
N1W C11 O2 DOUB N N 25
N1W C23 C12 SING N N 26
N1W C23 N6 SING N N 27
N1W C12 N2 SING N N 28
N1W C26 N6 SING N N 29
N1W C26 N5 SING N N 30
N1W O3 C13 DOUB N N 31
N1W N2 C13 SING N N 32
N1W C13 N3 SING N N 33
N1W O6 C22 DOUB N N 34
N1W O4 C19 SING N N 35
N1W N3 C14 SING N N 36
N1W C14 C22 SING N N 37
N1W C14 C15 SING N N 38
N1W C20 C19 DOUB Y N 39
N1W C20 C21 SING Y N 40
N1W C19 C18 SING Y N 41
N1W C22 O5 SING N N 42
N1W C21 C16 DOUB Y N 43
N1W C18 C17 DOUB Y N 44
N1W C16 C17 SING Y N 45
N1W C16 C15 SING N N 46
N1W C8 H1 SING N N 47
N1W C5 H2 SING N N 48
N1W C6 H3 SING N N 49
N1W N1 H4 SING N N 50
N1W C2 H5 SING N N 51
N1W C2 H6 SING N N 52
N1W N2 H7 SING N N 53
N1W N3 H8 SING N N 54
N1W C4 H9 SING N N 55
N1W O5 H10 SING N N 56
N1W C14 H11 SING N N 57
N1W C15 H12 SING N N 58
N1W C15 H13 SING N N 59
N1W C21 H14 SING N N 60
N1W C20 H15 SING N N 61
N1W O4 H16 SING N N 62
N1W C18 H17 SING N N 63
N1W C17 H18 SING N N 64
N1W C12 H19 SING N N 65
N1W C23 H20 SING N N 66
N1W N6 H21 SING N N 67
N1W N5 H22 SING N N 68
N1W N5 H23 SING N N 69
N1W C25 H24 SING N N 70
N1W C25 H25 SING N N 71
N1W C24 H26 SING N N 72
N1W C24 H27 SING N N 73
N1W C10 H28 SING N N 74
N1W C27 H29 SING N N 75
N1W C29 H30 SING N N 76
N1W C29 H31 SING N N 77
N1W C29 H32 SING N N 78
N1W C28 H33 SING N N 79
N1W C28 H34 SING N N 80
N1W C28 H35 SING N N 81
N1W N H36 SING N N 82
N1W C1 H37 SING N N 83
N1W C H38 SING N N 84
N1W C H39 SING N N 85
N1W O H40 SING N N 86
N1W C7 H41 SING N N 87
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
N1W InChI InChI 1.03 'InChI=1S/C30H41N7O7/c1-17(2)24(26(40)33-20(16-38)14-18-6-4-3-5-7-18)36-27(41)25(22-12-13-32-29(31)34-22)37-30(44)35-23(28(42)43)15-19-8-10-21(39)11-9-19/h3-11,17,20,22-25,38-39H,12-16H2,1-2H3,(H,33,40)(H,36,41)(H,42,43)(H3,31,32,34)(H2,35,37,44)/t20-,22-,23+,24-,25-/m0/s1'
N1W InChIKey InChI 1.03 JRKYEAYRXQTOFS-JRBASJLZSA-N
N1W SMILES_CANONICAL CACTVS 3.385 'CC(C)[C@H](NC(=O)[C@@H](NC(=O)N[C@H](Cc1ccc(O)cc1)C(O)=O)[C@@H]2CCN=C(N)N2)C(=O)N[C@H](CO)Cc3ccccc3'
N1W SMILES CACTVS 3.385 'CC(C)[CH](NC(=O)[CH](NC(=O)N[CH](Cc1ccc(O)cc1)C(O)=O)[CH]2CCN=C(N)N2)C(=O)N[CH](CO)Cc3ccccc3'
N1W SMILES_CANONICAL 'OpenEye OEToolkits' 2.0.7 'CC(C)[C@@H](C(=O)N[C@@H](Cc1ccccc1)CO)NC(=O)[C@H]([C@@H]2CCN=C(N2)N)NC(=O)N[C@H](Cc3ccc(cc3)O)C(=O)O'
N1W SMILES 'OpenEye OEToolkits' 2.0.7 'CC(C)C(C(=O)NC(Cc1ccccc1)CO)NC(=O)C(C2CCN=C(N2)N)NC(=O)NC(Cc3ccc(cc3)O)C(=O)O'
#
_pdbx_chem_comp_identifier.comp_id N1W
_pdbx_chem_comp_identifier.type 'SYSTEMATIC NAME'
_pdbx_chem_comp_identifier.program 'OpenEye OEToolkits'
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
'(2~{R})-2-[[(1~{S})-1-[(6~{S})-2-azanyl-1,4,5,6-tetrahydropyrimidin-6-yl]-2-[[(2~{S})-3-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-phenyl-propan-2-yl]amino]butan-2-yl]amino]-2-oxidanylidene-ethyl]carbamoylamino]-3-(4-hydroxyphenyl)propanoic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
N1W 'Create component' 2019-11-06 PDBE
N1W 'Initial release' 2019-12-04 RCSB
N1W 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id N1W
_pdbx_chem_comp_pcm.modified_residue_id CYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom C
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
_pdbx_chem_comp_pcm.first_instance_model_db_code 6TCX
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
N1W C8 C 4.299 8.715 1
N1W C5 C 6.897 10.215 2
N1W C6 C 5.598 10.965 3
N1W O6 O 5.598 -5.535 4
N1W N1 N 9.495 1.215 5
N1W C2 C 5.598 6.465 6
N1W N2 N 10.794 -2.535 7
N1W N3 N 9.495 -4.785 8
N1W C4 C 6.897 8.715 9
N1W C22 C 6.897 -4.785 10
N1W O5 O 6.897 -3.285 11
N1W C14 C 8.196 -5.535 12
N1W C15 C 8.196 -7.035 13
N1W C16 C 6.897 -7.785 14
N1W C21 C 6.897 -9.285 15
N1W C20 C 5.598 -10.035 16
N1W C19 C 4.299 -9.285 17
N1W O4 O 3.000 -10.035 18
N1W C18 C 4.299 -7.785 19
N1W C17 C 5.598 -7.035 20
N1W C13 C 9.495 -3.285 21
N1W O3 O 8.196 -2.535 22
N1W C12 C 10.794 -1.035 23
N1W C23 C 12.093 -0.285 24
N1W N6 N 13.392 -1.035 25
N1W C26 C 14.691 -0.285 26
N1W N5 N 15.990 -1.035 27
N1W N4 N 14.691 1.215 28
N1W C25 C 13.392 1.965 29
N1W C24 C 12.093 1.215 30
N1W C11 C 9.495 -0.285 31
N1W O2 O 8.196 -1.035 32
N1W C10 C 8.196 1.965 33
N1W C27 C 6.897 1.215 34
N1W C29 C 6.897 -0.285 35
N1W C28 C 5.598 1.965 36
N1W C9 C 8.196 3.465 37
N1W O1 O 9.495 4.215 38
N1W N N 6.897 4.215 39
N1W C1 C 6.897 5.715 40
N1W C C 8.196 6.465 41
N1W O O 8.196 7.965 42
N1W C3 C 5.598 7.965 43
N1W C7 C 4.299 10.215 44
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
N1W O C SINGLE NONE 1
N1W C1 C SINGLE BEGINWEDGE 2
N1W C1 C2 SINGLE NONE 3
N1W C1 N SINGLE NONE 4
N1W C2 C3 SINGLE NONE 5
N1W O1 C9 DOUBLE NONE 6
N1W C4 C3 SINGLE NONE 7
N1W C4 C5 DOUBLE NONE 8
N1W N C9 SINGLE NONE 9
N1W C3 C8 DOUBLE NONE 10
N1W C9 C10 SINGLE NONE 11
N1W C5 C6 SINGLE NONE 12
N1W C28 C27 SINGLE NONE 13
N1W C8 C7 SINGLE NONE 14
N1W C10 C27 SINGLE NONE 15
N1W C10 N1 SINGLE BEGINWEDGE 16
N1W C27 C29 SINGLE NONE 17
N1W C6 C7 DOUBLE NONE 18
N1W N1 C11 SINGLE NONE 19
N1W C24 C25 SINGLE NONE 20
N1W C23 C24 SINGLE BEGINDASH 21
N1W C25 N4 SINGLE NONE 22
N1W N4 C26 DOUBLE NONE 23
N1W C11 C12 SINGLE NONE 24
N1W C11 O2 DOUBLE NONE 25
N1W C23 C12 SINGLE NONE 26
N1W C23 N6 SINGLE NONE 27
N1W C12 N2 SINGLE BEGINDASH 28
N1W C26 N6 SINGLE NONE 29
N1W C26 N5 SINGLE NONE 30
N1W O3 C13 DOUBLE NONE 31
N1W N2 C13 SINGLE NONE 32
N1W C13 N3 SINGLE NONE 33
N1W O6 C22 DOUBLE NONE 34
N1W O4 C19 SINGLE NONE 35
N1W N3 C14 SINGLE NONE 36
N1W C14 C22 SINGLE NONE 37
N1W C14 C15 SINGLE BEGINDASH 38
N1W C20 C19 SINGLE NONE 39
N1W C20 C21 DOUBLE NONE 40
N1W C19 C18 DOUBLE NONE 41
N1W C22 O5 SINGLE NONE 42
N1W C21 C16 SINGLE NONE 43
N1W C18 C17 SINGLE NONE 44
N1W C16 C17 DOUBLE NONE 45
N1W C16 C15 SINGLE NONE 46
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
N1W MurckoScaffold S1 scaffold 'O=C(CNC(=O)[C@@H](NC(=O)NCCc1ccccc1)[C@@H]1CCN=CN1)NCCc1ccccc1' InChI=1S/C25H32N6O3/c32-22(27-15-11-19-7-3-1-4-8-19)17-29-24(33)23(21-13-14-26-18-30-21)31-25(34)28-16-12-20-9-5-2-6-10-20/h1-10,18,21,23H,11-17H2,(H,26,30)(H,27,32)(H,29,33)(H2,28,31,34)/t21-,23-/m0/s1 LBOAEJDZWMHDCC-GMAHTHKFSA-N
N1W amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
N1W peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
N1W phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
N1W C8 S1 1
N1W C5 S1 1
N1W C6 S1 1
N1W N1 S1 1
N1W C2 S1 1
N1W N2 S1 1
N1W N3 S1 1
N1W C4 S1 1
N1W C14 S1 1
N1W C15 S1 1
N1W C16 S1 1
N1W C21 S1 1
N1W C20 S1 1
N1W C19 S1 1
N1W C18 S1 1
N1W C17 S1 1
N1W C13 S1 1
N1W O3 S1 1
N1W C12 S1 1
N1W C23 S1 1
N1W N6 S1 1
N1W C26 S1 1
N1W N4 S1 1
N1W C25 S1 1
N1W C24 S1 1
N1W C11 S1 1
N1W O2 S1 1
N1W C10 S1 1
N1W C9 S1 1
N1W O1 S1 1
N1W N S1 1
N1W C1 S1 1
N1W C3 S1 1
N1W C7 S1 1
N1W N1 F1 1
N1W C11 F1 1
N1W O2 F1 1
N1W C12 F1 1
N1W N F1 2
N1W C9 F1 2
N1W O1 F1 2
N1W C10 F1 2
N1W O6 F2 1
N1W C22 F2 1
N1W C14 F2 1
N1W N3 F2 1
N1W O2 F2 2
N1W C11 F2 2
N1W C12 F2 2
N1W N2 F2 2
N1W O1 F2 3
N1W C9 F2 3
N1W C10 F2 3
N1W N1 F2 3
N1W C8 F3 1
N1W C3 F3 1
N1W C4 F3 1
N1W C5 F3 1
N1W C6 F3 1
N1W C7 F3 1
N1W C16 F3 2
N1W C21 F3 2
N1W C20 F3 2
N1W C19 F3 2
N1W C18 F3 2
N1W C17 F3 2
#
_pdbe_chem_comp_rdkit_properties.comp_id N1W
_pdbe_chem_comp_rdkit_properties.exactmw 611.307
_pdbe_chem_comp_rdkit_properties.amw 611.700
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 14
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 10
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 18
_pdbe_chem_comp_rdkit_properties.NumHBD 9
_pdbe_chem_comp_rdkit_properties.NumHBA 10
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 44
_pdbe_chem_comp_rdkit_properties.NumAtoms 85
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 14
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 4
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.433
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 313.335
_pdbe_chem_comp_rdkit_properties.tpsa 227.500
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.979
_pdbe_chem_comp_rdkit_properties.CrippenMR 161.509
_pdbe_chem_comp_rdkit_properties.chi0v 20.988
_pdbe_chem_comp_rdkit_properties.chi1v 10.836
_pdbe_chem_comp_rdkit_properties.chi2v 4.129
_pdbe_chem_comp_rdkit_properties.chi3v 4.129
_pdbe_chem_comp_rdkit_properties.chi4v 2.448
_pdbe_chem_comp_rdkit_properties.chi0n 61.988
_pdbe_chem_comp_rdkit_properties.chi1n 30.691
_pdbe_chem_comp_rdkit_properties.chi2n 4.129
_pdbe_chem_comp_rdkit_properties.chi3n 4.129
_pdbe_chem_comp_rdkit_properties.chi4n 2.448
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.850
_pdbe_chem_comp_rdkit_properties.kappa1 8.443
_pdbe_chem_comp_rdkit_properties.kappa2 16.121
_pdbe_chem_comp_rdkit_properties.kappa3 10.153
_pdbe_chem_comp_rdkit_properties.Phi 3.093
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
N1W UniChem PDBe N1W
N1W UniChem PubChem 145946089
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
N1W C8 5.724 -1.303 1.830 ETKDGv3 1
N1W C5 7.662 0.734 2.012 ETKDGv3 2
N1W C6 7.116 0.122 3.240 ETKDGv3 3
N1W O6 -7.079 -2.762 -0.843 ETKDGv3 4
N1W N1 0.934 0.317 1.013 ETKDGv3 5
N1W C2 5.720 -1.182 -0.650 ETKDGv3 6
N1W N2 -2.334 0.078 -0.826 ETKDGv3 7
N1W N3 -4.781 -0.030 -1.223 ETKDGv3 8
N1W C4 7.240 0.319 0.810 ETKDGv3 9
N1W C22 -6.209 -2.013 -1.364 ETKDGv3 10
N1W O5 -5.362 -2.526 -2.344 ETKDGv3 11
N1W C14 -6.135 -0.552 -0.998 ETKDGv3 12
N1W C15 -6.600 -0.286 0.451 ETKDGv3 13
N1W C16 -6.511 1.179 0.798 ETKDGv3 14
N1W C21 -7.561 2.113 0.323 ETKDGv3 15
N1W C20 -7.472 3.421 0.590 ETKDGv3 16
N1W C19 -6.324 3.947 1.359 ETKDGv3 17
N1W O4 -6.249 5.312 1.629 ETKDGv3 18
N1W C18 -5.369 3.107 1.786 ETKDGv3 19
N1W C17 -5.463 1.662 1.489 ETKDGv3 20
N1W C13 -3.606 -0.532 -0.564 ETKDGv3 21
N1W O3 -3.692 -1.502 0.236 ETKDGv3 22
N1W C12 -1.066 -0.485 -0.340 ETKDGv3 23
N1W C23 -0.422 -1.415 -1.399 ETKDGv3 24
N1W N6 -1.297 -2.562 -1.670 ETKDGv3 25
N1W C26 -1.372 -3.171 -2.969 ETKDGv3 26
N1W N5 -2.303 -4.225 -3.208 ETKDGv3 27
N1W N4 -0.626 -2.738 -3.942 ETKDGv3 28
N1W C25 0.381 -1.695 -3.760 ETKDGv3 29
N1W C24 -0.080 -0.680 -2.713 ETKDGv3 30
N1W C11 -0.109 0.608 0.073 ETKDGv3 31
N1W O2 -0.186 1.753 -0.451 ETKDGv3 32
N1W C10 2.029 1.256 1.279 ETKDGv3 33
N1W C27 2.715 0.935 2.636 ETKDGv3 34
N1W C29 1.706 1.006 3.793 ETKDGv3 35
N1W C28 3.882 1.897 2.922 ETKDGv3 36
N1W C9 3.016 1.193 0.140 ETKDGv3 37
N1W O1 3.387 2.263 -0.414 ETKDGv3 38
N1W N 3.553 -0.068 -0.287 ETKDGv3 39
N1W C1 4.692 -0.178 -1.204 ETKDGv3 40
N1W C 4.201 -0.616 -2.588 ETKDGv3 41
N1W O 3.362 0.369 -3.125 ETKDGv3 42
N1W C3 6.224 -0.757 0.706 ETKDGv3 43
N1W C7 6.196 -0.846 3.154 ETKDGv3 44
N1W H1 4.964 -2.073 1.782 ETKDGv3 45
N1W H2 8.401 1.521 2.086 ETKDGv3 46
N1W H3 7.458 0.462 4.209 ETKDGv3 47
N1W H4 0.993 -0.652 1.401 ETKDGv3 48
N1W H5 5.267 -2.197 -0.597 ETKDGv3 49
N1W H6 6.585 -1.248 -1.346 ETKDGv3 50
N1W H7 -2.312 0.882 -1.492 ETKDGv3 51
N1W H8 -4.669 0.754 -1.904 ETKDGv3 52
N1W H9 7.640 0.776 -0.086 ETKDGv3 53
N1W H10 -5.415 -3.499 -2.620 ETKDGv3 54
N1W H11 -6.833 -0.017 -1.680 ETKDGv3 55
N1W H12 -6.008 -0.894 1.169 ETKDGv3 56
N1W H13 -7.659 -0.607 0.562 ETKDGv3 57
N1W H14 -8.404 1.738 -0.245 ETKDGv3 58
N1W H15 -8.242 4.098 0.241 ETKDGv3 59
N1W H16 -5.478 5.711 2.152 ETKDGv3 60
N1W H17 -4.521 3.479 2.348 ETKDGv3 61
N1W H18 -4.674 1.005 1.832 ETKDGv3 62
N1W H19 -1.262 -1.090 0.573 ETKDGv3 63
N1W H20 0.528 -1.813 -0.975 ETKDGv3 64
N1W H21 -1.768 -3.042 -0.870 ETKDGv3 65
N1W H22 -2.379 -4.662 -4.154 ETKDGv3 66
N1W H23 -2.921 -4.570 -2.440 ETKDGv3 67
N1W H24 1.333 -2.163 -3.428 ETKDGv3 68
N1W H25 0.562 -1.185 -4.729 ETKDGv3 69
N1W H26 0.726 0.064 -2.540 ETKDGv3 70
N1W H27 -0.972 -0.149 -3.111 ETKDGv3 71
N1W H28 1.612 2.287 1.342 ETKDGv3 72
N1W H29 3.123 -0.099 2.601 ETKDGv3 73
N1W H30 2.210 0.778 4.757 ETKDGv3 74
N1W H31 1.254 2.018 3.857 ETKDGv3 75
N1W H32 0.896 0.260 3.657 ETKDGv3 76
N1W H33 3.528 2.950 2.929 ETKDGv3 77
N1W H34 4.677 1.790 2.155 ETKDGv3 78
N1W H35 4.339 1.665 3.908 ETKDGv3 79
N1W H36 3.105 -0.949 0.055 ETKDGv3 80
N1W H37 5.201 0.807 -1.312 ETKDGv3 81
N1W H38 3.648 -1.578 -2.503 ETKDGv3 82
N1W H39 5.073 -0.762 -3.264 ETKDGv3 83
N1W H40 3.070 0.028 -4.011 ETKDGv3 84
N1W H41 5.789 -1.290 4.053 ETKDGv3 85
#