data_N3L
#
_chem_comp.id N3L
_chem_comp.name "Penicimutamide E "
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C21 H25 N3 O"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-03-23
_chem_comp.pdbx_modified_date 2023-02-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 335.443
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code N3L
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7UF8
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
N3L C4 C1 C 0 1 Y N N N N N 17.184 30.097 111.128 5.299 -1.590 -0.249 C4 N3L 1
N3L C5 C2 C 0 1 Y N N N N N 17.843 29.146 110.308 5.842 -0.316 -0.247 C5 N3L 2
N3L C6 C3 C 0 1 Y N N N N N 17.669 29.193 108.941 5.062 0.818 -0.100 C6 N3L 3
N3L C7 C4 C 0 1 Y N N N N N 16.839 30.205 108.416 3.690 0.627 0.049 C7 N3L 4
N3L C8 C5 C 0 1 Y N N N N N 16.170 31.164 109.201 3.140 -0.682 0.046 C8 N3L 5
N3L C11 C6 C 0 1 N N R N N N 14.525 33.468 105.883 -0.840 0.311 1.036 C11 N3L 6
N3L C12 C7 C 0 1 Y N N N N N 15.429 31.989 108.253 1.713 -0.515 0.222 C12 N3L 7
N3L C13 C8 C 0 1 Y N N N N N 15.668 31.517 106.985 1.476 0.811 0.321 C13 N3L 8
N3L C14 C9 C 0 1 N N N N N N 14.141 30.909 105.086 -0.421 1.951 -0.808 C14 N3L 9
N3L C15 C10 C 0 1 N N S N N N 13.672 33.569 107.204 -0.720 -0.922 0.126 C15 N3L 10
N3L C16 C11 C 0 1 N N N N N N 14.559 33.137 108.459 0.645 -1.576 0.293 C16 N3L 11
N3L C17 C12 C 0 1 N N N N N N 16.337 32.171 104.565 0.181 2.541 1.546 C17 N3L 12
N3L C18 C13 C 0 1 N N N N N N 13.717 34.159 104.664 -2.288 0.819 0.931 C18 N3L 13
N3L C19 C14 C 0 1 N N S N N N 12.287 34.582 105.205 -2.978 0.097 -0.226 C19 N3L 14
N3L C20 C15 C 0 1 N N N N N N 13.272 35.108 107.424 -1.836 -1.904 0.506 C20 N3L 15
N3L C21 C16 C 0 1 N N N N N N 11.354 35.393 104.317 -4.414 0.580 -0.389 C21 N3L 16
N3L C22 C17 C 0 1 N N N N N N 11.657 36.947 104.550 -5.237 -0.361 0.529 C22 N3L 17
N3L C23 C18 C 0 1 N N N N N N 12.621 36.918 105.772 -4.201 -1.363 1.106 C23 N3L 18
N3L C24 C19 C 0 1 N N N N N N 11.788 33.192 105.696 -2.127 0.163 -1.467 C24 N3L 19
N3L C10 C20 C 0 1 N N N N N N 15.137 32.021 105.637 0.103 1.406 0.523 C10 N3L 20
N3L C9 C21 C 0 1 Y N N N N N 16.366 31.086 110.585 3.951 -1.810 -0.110 C9 N3L 21
N3L N1 N1 N 0 1 Y N N N N N 16.505 30.457 107.107 2.655 1.501 0.214 N1 N3L 22
N3L N2 N2 N 0 1 N N N N N N 12.349 35.543 106.336 -3.116 -1.345 0.115 N2 N3L 23
N3L N3 N3 N 0 1 N N N N N N 12.335 32.927 106.972 -0.913 -0.470 -1.267 N3 N3L 24
N3L O25 O1 O 0 1 N N N N N N 11.049 32.424 105.141 -2.462 0.699 -2.502 O25 N3L 25
N3L H26 H1 H 0 1 N N N N N N 17.319 30.054 112.199 5.957 -2.439 -0.367 H26 N3L 26
N3L H27 H2 H 0 1 N N N N N N 18.476 28.391 110.751 6.910 -0.204 -0.364 H27 N3L 27
N3L H28 H3 H 0 1 N N N N N N 18.153 28.477 108.293 5.497 1.807 -0.100 H28 N3L 28
N3L H34 H4 H 0 1 N N N N N N 15.394 34.121 106.050 -0.608 0.043 2.067 H34 N3L 29
N3L H30 H5 H 0 1 N N N N N N 13.308 30.779 105.793 0.074 2.896 -1.033 H30 N3L 30
N3L H32 H6 H 0 1 N N N N N N 13.747 31.222 104.108 -0.213 1.234 -1.601 H32 N3L 31
N3L H31 H7 H 0 1 N N N N N N 14.680 29.956 104.976 -1.497 2.112 -0.736 H31 N3L 32
N3L H36 H8 H 0 1 N N N N N N 15.190 33.994 108.737 0.800 -2.304 -0.503 H36 N3L 33
N3L H35 H9 H 0 1 N N N N N N 13.877 32.899 109.289 0.693 -2.077 1.260 H35 N3L 34
N3L H39 H10 H 0 1 N N N N N N 17.048 32.934 104.914 -0.812 2.966 1.694 H39 N3L 35
N3L H37 H11 H 0 1 N N N N N N 16.857 31.207 104.459 0.554 2.151 2.493 H37 N3L 36
N3L H38 H12 H 0 1 N N N N N N 15.923 32.473 103.592 0.856 3.314 1.181 H38 N3L 37
N3L H41 H13 H 0 1 N N N N N N 13.607 33.444 103.836 -2.817 0.611 1.860 H41 N3L 38
N3L H40 H14 H 0 1 N N N N N N 14.261 35.048 104.311 -2.285 1.893 0.741 H40 N3L 39
N3L H42 H15 H 0 1 N N N N N N 14.180 35.729 107.405 -1.679 -2.851 -0.012 H42 N3L 40
N3L H43 H16 H 0 1 N N N N N N 12.771 35.221 108.397 -1.823 -2.071 1.583 H43 N3L 41
N3L H44 H17 H 0 1 N N N N N N 10.308 35.175 104.580 -4.509 1.615 -0.059 H44 N3L 42
N3L H45 H18 H 0 1 N N N N N N 11.528 35.135 103.262 -4.735 0.479 -1.426 H45 N3L 43
N3L H46 H19 H 0 1 N N N N N N 12.143 37.394 103.670 -5.704 0.207 1.334 H46 N3L 44
N3L H47 H20 H 0 1 N N N N N N 10.736 37.502 104.782 -5.994 -0.890 -0.051 H47 N3L 45
N3L H49 H21 H 0 1 N N N N N N 13.670 37.024 105.459 -3.839 -1.025 2.077 H49 N3L 46
N3L H48 H22 H 0 1 N N N N N N 12.374 37.706 106.498 -4.633 -2.361 1.183 H48 N3L 47
N3L H29 H23 H 0 1 N N N N N N 15.880 31.797 111.236 3.537 -2.807 -0.114 H29 N3L 48
N3L H33 H24 H 0 1 N N N N N N 16.841 29.920 106.333 2.742 2.467 0.251 H33 N3L 49
N3L H50 H26 H 0 1 N N N N N N 11.874 32.364 107.657 -0.257 -0.602 -1.969 H50 N3L 50
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
N3L C21 C22 SING N N 1
N3L C21 C19 SING N N 2
N3L C22 C23 SING N N 3
N3L C17 C10 SING N N 4
N3L C18 C19 SING N N 5
N3L C18 C11 SING N N 6
N3L C14 C10 SING N N 7
N3L O25 C24 DOUB N N 8
N3L C19 C24 SING N N 9
N3L C19 N2 SING N N 10
N3L C10 C11 SING N N 11
N3L C10 C13 SING N N 12
N3L C24 N3 SING N N 13
N3L C23 N2 SING N N 14
N3L C11 C15 SING N N 15
N3L N2 C20 SING N N 16
N3L N3 C15 SING N N 17
N3L C13 N1 SING Y N 18
N3L C13 C12 DOUB Y N 19
N3L N1 C7 SING Y N 20
N3L C15 C20 SING N N 21
N3L C15 C16 SING N N 22
N3L C12 C16 SING N N 23
N3L C12 C8 SING Y N 24
N3L C7 C6 DOUB Y N 25
N3L C7 C8 SING Y N 26
N3L C6 C5 SING Y N 27
N3L C8 C9 DOUB Y N 28
N3L C5 C4 DOUB Y N 29
N3L C9 C4 SING Y N 30
N3L C4 H26 SING N N 31
N3L C5 H27 SING N N 32
N3L C6 H28 SING N N 33
N3L C11 H34 SING N N 34
N3L C14 H30 SING N N 35
N3L C14 H32 SING N N 36
N3L C14 H31 SING N N 37
N3L C16 H36 SING N N 38
N3L C16 H35 SING N N 39
N3L C17 H39 SING N N 40
N3L C17 H37 SING N N 41
N3L C17 H38 SING N N 42
N3L C18 H41 SING N N 43
N3L C18 H40 SING N N 44
N3L C20 H42 SING N N 45
N3L C20 H43 SING N N 46
N3L C21 H44 SING N N 47
N3L C21 H45 SING N N 48
N3L C22 H46 SING N N 49
N3L C22 H47 SING N N 50
N3L C23 H49 SING N N 51
N3L C23 H48 SING N N 52
N3L C9 H29 SING N N 53
N3L N1 H33 SING N N 54
N3L N3 H50 SING N N 55
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
N3L SMILES ACDLabs 12.01 CC1(C)C2CC34CCCN4CC2(NC3=O)Cc2c3ccccc3[NH]c21
N3L InChI InChI 1.03 InChI=1S/C21H25N3O/c1-19(2)16-11-21-8-5-9-24(21)12-20(16,23-18(21)25)10-14-13-6-3-4-7-15(13)22-17(14)19/h3-4,6-7,16,22H,5,8-12H2,1-2H3,(H,23,25)/t16-,20-,21+/m1/s1
N3L InChIKey InChI 1.03 LBTZXCFDJFHPMI-HBGVWJBISA-N
N3L SMILES_CANONICAL CACTVS 3.385 CC1(C)[C@H]2C[C@]34CCCN3C[C@@]2(Cc5c1[nH]c6ccccc56)NC4=O
N3L SMILES CACTVS 3.385 CC1(C)[CH]2C[C]34CCCN3C[C]2(Cc5c1[nH]c6ccccc56)NC4=O
N3L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CC1(c2c(c3ccccc3[nH]2)C[C@]45[C@@H]1C[C@@]6(CCCN6C4)C(=O)N5)C
N3L SMILES "OpenEye OEToolkits" 2.0.7 CC1(c2c(c3ccccc3[nH]2)CC45C1CC6(CCCN6C4)C(=O)N5)C
#
_pdbx_chem_comp_identifier.comp_id N3L
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program ACDLabs
_pdbx_chem_comp_identifier.program_version 12.01
_pdbx_chem_comp_identifier.identifier
(4R,5aS,12aR,13aS)-12,12-dimethyl-2,3,11,12,12a,13-hexahydro-1H,5H,6H-5a,13a-(epiminomethano)indolizino[7,6-b]carbazol-14-one
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
N3L 'Create component' 2022-03-23 RCSB
N3L 'Initial release' 2023-02-22 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.09.6 'Core functionality.'
pdbeccdutils 0.8.6 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
N3L C4 C 6.410 -5.547 1
N3L C5 C 4.801 -5.715 2
N3L C6 C 3.861 -4.398 3
N3L C7 C 4.543 -2.931 4
N3L C8 C 6.088 -2.770 5
N3L C11 C 6.439 1.853 6
N3L C12 C 6.415 -1.251 7
N3L C13 C 5.062 -0.470 8
N3L C14 C 4.339 2.400 9
N3L C15 C 7.738 1.103 10
N3L C16 C 7.762 -0.460 11
N3L C17 C 3.574 1.110 12
N3L C18 C 6.439 3.353 13
N3L C19 C 7.738 4.103 14
N3L C20 C 9.037 1.853 15
N3L C21 C 8.051 5.560 16
N3L C22 C 9.535 5.715 17
N3L C23 C 10.142 4.353 18
N3L C24 C 7.138 3.203 19
N3L C10 C 5.074 1.092 20
N3L C9 C 7.058 -4.065 21
N3L N1 N 3.910 -1.512 22
N3L N2 N 9.037 3.353 23
N3L N3 N 7.138 2.002 24
N3L O25 O 6.077 4.263 25
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
N3L C21 C22 SINGLE NONE 1
N3L C19 C21 SINGLE BEGINWEDGE 2
N3L C22 C23 SINGLE NONE 3
N3L C17 C10 SINGLE NONE 4
N3L C18 C19 SINGLE NONE 5
N3L C18 C11 SINGLE NONE 6
N3L C14 C10 SINGLE NONE 7
N3L O25 C24 DOUBLE NONE 8
N3L C19 C24 SINGLE NONE 9
N3L C19 N2 SINGLE NONE 10
N3L C10 C11 SINGLE NONE 11
N3L C10 C13 SINGLE NONE 12
N3L C24 N3 SINGLE NONE 13
N3L C23 N2 SINGLE NONE 14
N3L C11 C15 SINGLE NONE 15
N3L N2 C20 SINGLE NONE 16
N3L N3 C15 SINGLE NONE 17
N3L C13 N1 SINGLE NONE 18
N3L C13 C12 DOUBLE NONE 19
N3L N1 C7 SINGLE NONE 20
N3L C15 C20 SINGLE NONE 21
N3L C15 C16 SINGLE BEGINWEDGE 22
N3L C12 C16 SINGLE NONE 23
N3L C12 C8 SINGLE NONE 24
N3L C7 C6 SINGLE NONE 25
N3L C7 C8 DOUBLE NONE 26
N3L C6 C5 DOUBLE NONE 27
N3L C8 C9 SINGLE NONE 28
N3L C5 C4 SINGLE NONE 29
N3L C9 C4 DOUBLE NONE 30
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
N3L MurckoScaffold S1 scaffold 'O=C1N[C@@]23Cc4c([nH]c5ccccc45)C[C@H]2C[C@@]12CCCN2C3' InChI=1S/C19H21N3O/c23-17-19-6-3-7-22(19)11-18(21-17)10-14-13-4-1-2-5-15(13)20-16(14)8-12(18)9-19/h1-2,4-5,12,20H,3,6-11H2,(H,21,23)/t12-,18+,19-/m0/s1 MEJROYYSRSXENE-RQUSPXKASA-N
N3L amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
N3L indole F2 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
N3L peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
N3L phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
N3L piperazine F5 fragment C1CNCCN1 InChI=1S/C4H10N2/c1-2-6-4-3-5-1/h5-6H,1-4H2 GLUUGHFHXGJENI-UHFFFAOYSA-N
N3L pyrrole F6 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
N3L Z1741785925 F7 fragment CC1CCNC(C(N)=O)C1 InChI=1S/C7H14N2O/c1-5-2-3-9-6(4-5)7(8)10/h5-6,9H,2-4H2,1H3,(H2,8,10) RIOBEGOHZRAHCD-UHFFFAOYSA-N
N3L Z1741815708 F8 fragment CC1(C)CCCN1CCN InChI=1S/C8H18N2/c1-8(2)4-3-6-10(8)7-5-9/h3-7,9H2,1-2H3 ZSHAGSDVWLLMSY-UHFFFAOYSA-N
N3L Z1741966630 F9 fragment CC(C)(N)CN1CCCC1 InChI=1S/C8H18N2/c1-8(2,9)7-10-5-3-4-6-10/h3-7,9H2,1-2H3 MWBKOGAZOXPSCI-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
N3L C4 S1 1
N3L C5 S1 1
N3L C6 S1 1
N3L C7 S1 1
N3L C8 S1 1
N3L C11 S1 1
N3L C12 S1 1
N3L C13 S1 1
N3L C15 S1 1
N3L C16 S1 1
N3L C18 S1 1
N3L C19 S1 1
N3L C20 S1 1
N3L C21 S1 1
N3L C22 S1 1
N3L C23 S1 1
N3L C24 S1 1
N3L C10 S1 1
N3L C9 S1 1
N3L N1 S1 1
N3L N2 S1 1
N3L N3 S1 1
N3L O25 S1 1
N3L N3 F1 1
N3L C24 F1 1
N3L O25 F1 1
N3L C19 F1 1
N3L C7 F2 1
N3L C8 F2 1
N3L C12 F2 1
N3L C13 F2 1
N3L N1 F2 1
N3L C9 F2 1
N3L C4 F2 1
N3L C5 F2 1
N3L C6 F2 1
N3L O25 F3 1
N3L C24 F3 1
N3L C19 F3 1
N3L N2 F3 1
N3L C4 F4 1
N3L C5 F4 1
N3L C6 F4 1
N3L C7 F4 1
N3L C8 F4 1
N3L C9 F4 1
N3L N2 F5 1
N3L C19 F5 1
N3L C24 F5 1
N3L N3 F5 1
N3L C15 F5 1
N3L C20 F5 1
N3L C7 F6 1
N3L C8 F6 1
N3L C12 F6 1
N3L C13 F6 1
N3L N1 F6 1
N3L C10 F7 1
N3L C11 F7 1
N3L C15 F7 1
N3L C20 F7 1
N3L N2 F7 1
N3L C19 F7 1
N3L C18 F7 1
N3L C24 F7 1
N3L O25 F7 1
N3L N3 F7 1
N3L C18 F8 1
N3L C19 F8 1
N3L C24 F8 1
N3L C21 F8 1
N3L C22 F8 1
N3L C23 F8 1
N3L N2 F8 1
N3L C20 F8 1
N3L C15 F8 1
N3L N3 F8 1
N3L C11 F9 1
N3L C15 F9 1
N3L C16 F9 1
N3L N3 F9 1
N3L C20 F9 1
N3L N2 F9 1
N3L C19 F9 1
N3L C21 F9 1
N3L C22 F9 1
N3L C23 F9 1
#
_pdbe_chem_comp_rdkit_properties.comp_id N3L
_pdbe_chem_comp_rdkit_properties.exactmw 335.200
_pdbe_chem_comp_rdkit_properties.amw 335.451
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 4
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 2
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 2
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 25
_pdbe_chem_comp_rdkit_properties.NumAtoms 50
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 4
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.571
_pdbe_chem_comp_rdkit_properties.NumRings 7
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 5
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 4
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 5
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 4
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 2
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 2
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 182.755
_pdbe_chem_comp_rdkit_properties.tpsa 48.130
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.187
_pdbe_chem_comp_rdkit_properties.CrippenMR 94.809
_pdbe_chem_comp_rdkit_properties.chi0v 12.250
_pdbe_chem_comp_rdkit_properties.chi1v 7.269
_pdbe_chem_comp_rdkit_properties.chi2v 4.681
_pdbe_chem_comp_rdkit_properties.chi3v 4.681
_pdbe_chem_comp_rdkit_properties.chi4v 3.551
_pdbe_chem_comp_rdkit_properties.chi0n 37.250
_pdbe_chem_comp_rdkit_properties.chi1n 19.664
_pdbe_chem_comp_rdkit_properties.chi2n 4.681
_pdbe_chem_comp_rdkit_properties.chi3n 4.681
_pdbe_chem_comp_rdkit_properties.chi4n 3.551
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.810
_pdbe_chem_comp_rdkit_properties.kappa1 4.036
_pdbe_chem_comp_rdkit_properties.kappa2 4.118
_pdbe_chem_comp_rdkit_properties.kappa3 1.480
_pdbe_chem_comp_rdkit_properties.Phi 0.665
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
N3L UniChem PubChem 101734685
N3L UniChem Nikkaji J2.055.678A
N3L UniChem CCDC KIFLOE
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
N3L C4 5.505 -1.811 -0.245 ETKDGv3 1
N3L C5 6.185 -0.503 -0.007 ETKDGv3 2
N3L C6 5.463 0.604 0.245 ETKDGv3 3
N3L C7 3.996 0.484 0.279 ETKDGv3 4
N3L C8 3.396 -0.671 0.067 ETKDGv3 5
N3L C11 -0.695 0.477 0.783 ETKDGv3 6
N3L C12 1.959 -0.440 0.151 ETKDGv3 7
N3L C13 1.788 0.847 0.458 ETKDGv3 8
N3L C14 0.290 2.335 -0.803 ETKDGv3 9
N3L C15 -0.527 -0.852 -0.060 ETKDGv3 10
N3L C16 0.882 -1.475 0.069 ETKDGv3 11
N3L C17 0.455 2.551 1.694 ETKDGv3 12
N3L C18 -2.168 1.036 0.619 ETKDGv3 13
N3L C19 -2.973 0.077 -0.285 ETKDGv3 14
N3L C20 -1.616 -1.867 0.418 ETKDGv3 15
N3L C21 -4.450 0.403 -0.471 ETKDGv3 16
N3L C22 -5.106 -0.971 -0.631 ETKDGv3 17
N3L C23 -4.045 -1.996 -0.210 ETKDGv3 18
N3L C24 -2.199 -0.039 -1.594 ETKDGv3 19
N3L C10 0.443 1.545 0.522 ETKDGv3 20
N3L C9 4.162 -1.897 -0.211 ETKDGv3 21
N3L N1 3.053 1.516 0.526 ETKDGv3 22
N3L N2 -2.960 -1.225 0.397 ETKDGv3 23
N3L N3 -0.871 -0.543 -1.451 ETKDGv3 24
N3L O25 -2.662 0.295 -2.718 ETKDGv3 25
N3L H26 6.098 -2.694 -0.447 ETKDGv3 26
N3L H27 7.265 -0.448 -0.038 ETKDGv3 27
N3L H28 5.946 1.557 0.419 ETKDGv3 28
N3L H34 -0.593 0.162 1.847 ETKDGv3 29
N3L H30 -0.598 2.995 -0.812 ETKDGv3 30
N3L H32 0.254 1.665 -1.683 ETKDGv3 31
N3L H31 1.165 3.005 -0.951 ETKDGv3 32
N3L H36 1.081 -2.156 -0.786 ETKDGv3 33
N3L H35 0.944 -2.079 0.999 ETKDGv3 34
N3L H39 0.698 2.038 2.650 ETKDGv3 35
N3L H37 -0.538 3.038 1.803 ETKDGv3 36
N3L H38 1.205 3.354 1.532 ETKDGv3 37
N3L H41 -2.649 1.089 1.621 ETKDGv3 38
N3L H40 -2.218 2.058 0.203 ETKDGv3 39
N3L H42 -1.585 -2.774 -0.227 ETKDGv3 40
N3L H43 -1.402 -2.192 1.459 ETKDGv3 41
N3L H44 -4.645 1.063 -1.344 ETKDGv3 42
N3L H45 -4.849 0.896 0.443 ETKDGv3 43
N3L H46 -5.404 -1.138 -1.689 ETKDGv3 44
N3L H47 -6.007 -1.048 0.017 ETKDGv3 45
N3L H49 -4.459 -2.714 0.530 ETKDGv3 46
N3L H48 -3.690 -2.552 -1.107 ETKDGv3 47
N3L H29 3.661 -2.840 -0.383 ETKDGv3 48
N3L H33 3.247 2.532 0.666 ETKDGv3 49
N3L H50 -0.231 -0.695 -2.263 ETKDGv3 50
#