data_N5N
#
_chem_comp.id N5N
_chem_comp.name
;2-[[(2S)-4-[[(3S)-1-carbamimidoylpiperidin-3-yl]methylamino]-2-(naphthalen-2-ylsulfonylamino)-4-oxidanylidene-butanoyl]
-cyclopropyl-amino]ethanoic acid
;
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C26 H34 N6 O6 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "NAPSAGATRAN; Ro-46-6240"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-06-11
_chem_comp.pdbx_modified_date 2020-06-17
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 558.650
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code N5N
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4AX9
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
N5N N1 N1 N 0 1 N N N N N N 17.737 -12.975 21.127 1.451 -2.140 -0.544 N1 N5N 1
N5N C2 C2 C 0 1 N N N N N N 18.683 -13.722 20.352 2.361 -3.092 -1.185 C2 N5N 2
N5N C3 C3 C 0 1 N N N N N N 16.879 -13.615 22.019 1.332 -0.889 -1.031 C3 N5N 3
N5N C4 C4 C 0 1 N N N N N N 17.659 -11.582 20.844 0.665 -2.549 0.622 C4 N5N 4
N5N C5 C5 C 0 1 N N N N N N 20.070 -13.147 20.065 3.495 -3.668 -0.335 C5 N5N 5
N5N C6 C6 C 0 1 N N N N N N 19.920 -14.328 20.977 2.304 -4.548 -0.718 C6 N5N 6
N5N C7 C7 C 0 1 N N S N N N 16.946 -15.160 22.165 0.396 0.091 -0.372 C7 N5N 7
N5N O8 O8 O 0 1 N N N N N N 16.058 -12.975 22.691 1.979 -0.552 -2.000 O8 N5N 8
N5N C9 C9 C 0 1 N N N N N N 16.666 -11.627 19.679 1.445 -2.263 1.879 C9 N5N 9
N5N N10 N10 N 0 1 N N N N N N 16.485 -15.646 23.411 0.776 1.456 -0.744 N10 N5N 10
N5N C11 C11 C 0 1 N N N N N N 15.977 -15.656 21.055 -1.037 -0.184 -0.833 C11 N5N 11
N5N O12 O12 O 0 1 N N N N N N 16.590 -10.557 18.856 0.919 -2.558 3.078 O12 N5N 12
N5N O13 O13 O 0 1 N N N N N N 15.920 -12.553 19.365 2.545 -1.768 1.808 O13 N5N 13
N5N S14 S14 S 0 1 N N N N N N 17.412 -16.746 24.138 1.765 2.339 0.247 S14 N5N 14
N5N C15 C15 C 0 1 N N N N N N 14.484 -15.331 21.312 -1.987 0.714 -0.083 C15 N5N 15
N5N C16 C16 C 0 1 Y N N N N N 18.743 -15.826 24.575 3.330 1.531 0.278 C16 N5N 16
N5N O17 O17 O 0 1 N N N N N N 16.688 -17.072 25.291 1.971 3.587 -0.400 O17 N5N 17
N5N O18 O18 O 0 1 N N N N N N 17.662 -17.684 23.135 1.228 2.223 1.557 O18 N5N 18
N5N N19 N19 N 0 1 N N N N N N 13.887 -14.227 20.723 -3.311 0.647 -0.326 N19 N5N 19
N5N O20 O20 O 0 1 N N N N N N 13.786 -16.085 22.030 -1.560 1.496 0.741 O20 N5N 20
N5N C21 C21 C 0 1 Y N N N N N 20.040 -16.017 24.153 4.278 1.870 -0.639 C21 N5N 21
N5N C22 C22 C 0 1 Y N N N N N 18.475 -14.750 25.465 3.581 0.558 1.243 C22 N5N 22
N5N C23 C23 C 0 1 N N N N N N 12.499 -13.898 20.899 -4.234 1.520 0.404 C23 N5N 23
N5N C24 C24 C 0 1 Y N N N N N 21.057 -15.140 24.618 5.528 1.227 -0.617 C24 N5N 24
N5N C25 C25 C 0 1 Y N N N N N 19.433 -13.899 25.925 4.780 -0.086 1.294 C25 N5N 25
N5N C26 C26 C 0 1 N N S N N N 12.190 -12.450 21.333 -5.667 1.245 -0.057 C26 N5N 26
N5N C27 C27 C 0 1 Y N N N N N 20.748 -14.080 25.510 5.781 0.234 0.362 C27 N5N 27
N5N C28 C28 C 0 1 Y N N N N N 22.399 -15.294 24.212 6.531 1.550 -1.547 C28 N5N 28
N5N C29 C29 C 0 1 N N N N N N 12.576 -12.316 22.809 -6.065 -0.182 0.332 C29 N5N 29
N5N C30 C30 C 0 1 N N N N N N 12.971 -11.434 20.502 -6.619 2.237 0.615 C30 N5N 30
N5N C31 C31 C 0 1 Y N N N N N 21.761 -13.202 25.970 7.030 -0.410 0.383 C31 N5N 31
N5N C32 C32 C 0 1 Y N N N N N 23.363 -14.435 24.658 7.729 0.906 -1.495 C32 N5N 32
N5N N33 N33 N 0 1 N N N N N N 12.438 -10.966 23.338 -7.482 -0.385 -0.000 N33 N5N 33
N5N C34 C34 C 0 1 N N N N N N 12.688 -10.032 21.030 -8.048 1.985 0.130 C34 N5N 34
N5N C35 C35 C 0 1 Y N N N N N 23.047 -13.379 25.547 7.978 -0.071 -0.533 C35 N5N 35
N5N C36 C36 C 0 1 N N N N N N 13.038 -9.916 22.512 -8.473 0.567 0.521 C36 N5N 36
N5N C37 C37 C 0 1 N N N N N N 11.225 -10.771 24.116 -7.872 -1.444 -0.784 C37 N5N 37
N5N N38 N38 N 0 1 N N N N N N 10.460 -11.953 24.333 -9.209 -1.688 -0.994 N38 N5N 38
N5N N39 N39 N 0 1 N N N N N N 10.886 -9.605 24.572 -6.975 -2.218 -1.328 N39 N5N 39
N5N H2 H2 H 0 1 N N N N N N 18.262 -14.309 19.522 2.565 -2.910 -2.240 H2 N5N 40
N5N H41C H41C H 0 0 N N N N N N 17.267 -11.009 21.698 -0.273 -1.994 0.642 H41C N5N 41
N5N H42C H42C H 0 0 N N N N N N 18.632 -11.168 20.540 0.453 -3.617 0.561 H42C N5N 42
N5N H51C H51C H 0 0 N N N N N N 20.523 -13.274 19.071 4.446 -3.864 -0.830 H51C N5N 43
N5N H52C H52C H 0 0 N N N N N N 20.355 -12.167 20.476 3.564 -3.337 0.702 H52C N5N 44
N5N H61C H61C H 0 0 N N N N N N 20.101 -14.213 22.056 1.589 -4.797 0.067 H61C N5N 45
N5N H62C H62C H 0 0 N N N N N N 20.268 -15.319 20.651 2.471 -5.324 -1.465 H62C N5N 46
N5N H7 H7 H 0 1 N N N N N N 17.966 -15.508 21.946 0.457 -0.021 0.711 H7 N5N 47
N5N H10 H10 H 0 1 N N N N N N 16.398 -14.865 24.029 0.449 1.842 -1.572 H10 N5N 48
N5N H111 H111 H 0 0 N N N N N N 16.272 -15.185 20.106 -1.118 0.014 -1.902 H111 N5N 49
N5N H112 H112 H 0 0 N N N N N N 16.081 -16.748 20.971 -1.289 -1.225 -0.636 H112 N5N 50
N5N H12 H12 H 0 1 N N N N N N 15.955 -10.729 18.170 1.457 -2.356 3.856 H12 N5N 51
N5N H19 H19 H 0 1 N N N N N N 14.449 -13.631 20.149 -3.652 0.022 -0.984 H19 N5N 52
N5N H21 H21 H 0 1 N N N N N N 20.281 -16.824 23.477 4.071 2.628 -1.379 H21 N5N 53
N5N H22 H22 H 0 1 N N N N N N 17.457 -14.600 25.794 2.814 0.311 1.961 H22 N5N 54
N5N H231 H231 H 0 0 N N N N N N 11.988 -14.077 19.942 -4.152 1.322 1.473 H231 N5N 55
N5N H232 H232 H 0 0 N N N N N N 12.089 -14.572 21.665 -3.982 2.562 0.207 H232 N5N 56
N5N H25 H25 H 0 1 N N N N N N 19.176 -13.097 26.601 4.960 -0.837 2.049 H25 N5N 57
N5N H26 H26 H 0 1 N N N N N N 11.112 -12.262 21.220 -5.728 1.358 -1.139 H26 N5N 58
N5N H28 H28 H 0 1 N N N N N N 22.667 -16.098 23.543 6.352 2.305 -2.298 H28 N5N 59
N5N H291 H291 H 0 0 N N N N N N 11.931 -12.985 23.397 -5.454 -0.895 -0.221 H291 N5N 60
N5N H292 H292 H 0 0 N N N N N N 13.625 -12.626 22.921 -5.917 -0.323 1.403 H292 N5N 61
N5N H301 H301 H 0 0 N N N N N N 14.048 -11.646 20.579 -6.574 2.107 1.697 H301 N5N 62
N5N H302 H302 H 0 0 N N N N N N 12.658 -11.501 19.450 -6.322 3.255 0.360 H302 N5N 63
N5N H31 H31 H 0 1 N N N N N N 21.518 -12.399 26.650 7.238 -1.168 1.123 H31 N5N 64
N5N H32 H32 H 0 1 N N N N N N 24.383 -14.563 24.327 8.498 1.156 -2.211 H32 N5N 65
N5N H341 H341 H 0 0 N N N N N N 13.289 -9.307 20.462 -8.722 2.707 0.591 H341 N5N 66
N5N H342 H342 H 0 0 N N N N N N 11.620 -9.807 20.896 -8.087 2.091 -0.955 H342 N5N 67
N5N H35 H35 H 0 1 N N N N N N 23.824 -12.713 25.891 8.937 -0.566 -0.514 H35 N5N 68
N5N H361 H361 H 0 0 N N N N N N 12.685 -8.941 22.878 -9.451 0.347 0.092 H361 N5N 69
N5N H362 H362 H 0 0 N N N N N N 14.132 -9.973 22.617 -8.521 0.486 1.607 H362 N5N 70
N5N H381 H381 H 0 0 N N N N N N 9.612 -11.910 24.862 -9.874 -1.072 -0.650 H381 N5N 71
N5N H382 H382 H 0 0 N N N N N N 10.771 -12.826 23.957 -9.487 -2.476 -1.487 H382 N5N 72
N5N H39 H39 H 0 1 N N N N N N 10.031 -9.639 25.089 -7.251 -2.966 -1.881 H39 N5N 73
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
N5N N1 C2 SING N N 1
N5N N1 C3 SING N N 2
N5N N1 C4 SING N N 3
N5N C2 C5 SING N N 4
N5N C2 C6 SING N N 5
N5N C3 C7 SING N N 6
N5N C3 O8 DOUB N N 7
N5N C4 C9 SING N N 8
N5N C5 C6 SING N N 9
N5N C7 N10 SING N N 10
N5N C7 C11 SING N N 11
N5N C9 O12 SING N N 12
N5N C9 O13 DOUB N N 13
N5N N10 S14 SING N N 14
N5N C11 C15 SING N N 15
N5N S14 C16 SING N N 16
N5N S14 O17 DOUB N N 17
N5N S14 O18 DOUB N N 18
N5N C15 N19 SING N N 19
N5N C15 O20 DOUB N N 20
N5N C16 C21 SING Y N 21
N5N C16 C22 DOUB Y N 22
N5N N19 C23 SING N N 23
N5N C21 C24 DOUB Y N 24
N5N C22 C25 SING Y N 25
N5N C23 C26 SING N N 26
N5N C24 C27 SING Y N 27
N5N C24 C28 SING Y N 28
N5N C25 C27 DOUB Y N 29
N5N C26 C29 SING N N 30
N5N C26 C30 SING N N 31
N5N C27 C31 SING Y N 32
N5N C28 C32 DOUB Y N 33
N5N C29 N33 SING N N 34
N5N C30 C34 SING N N 35
N5N C31 C35 DOUB Y N 36
N5N C32 C35 SING Y N 37
N5N N33 C36 SING N N 38
N5N N33 C37 SING N N 39
N5N C34 C36 SING N N 40
N5N C37 N38 SING N N 41
N5N C37 N39 DOUB N N 42
N5N C2 H2 SING N N 43
N5N C4 H41C SING N N 44
N5N C4 H42C SING N N 45
N5N C5 H51C SING N N 46
N5N C5 H52C SING N N 47
N5N C6 H61C SING N N 48
N5N C6 H62C SING N N 49
N5N C7 H7 SING N N 50
N5N N10 H10 SING N N 51
N5N C11 H111 SING N N 52
N5N C11 H112 SING N N 53
N5N O12 H12 SING N N 54
N5N N19 H19 SING N N 55
N5N C21 H21 SING N N 56
N5N C22 H22 SING N N 57
N5N C23 H231 SING N N 58
N5N C23 H232 SING N N 59
N5N C25 H25 SING N N 60
N5N C26 H26 SING N N 61
N5N C28 H28 SING N N 62
N5N C29 H291 SING N N 63
N5N C29 H292 SING N N 64
N5N C30 H301 SING N N 65
N5N C30 H302 SING N N 66
N5N C31 H31 SING N N 67
N5N C32 H32 SING N N 68
N5N C34 H341 SING N N 69
N5N C34 H342 SING N N 70
N5N C35 H35 SING N N 71
N5N C36 H361 SING N N 72
N5N C36 H362 SING N N 73
N5N N38 H381 SING N N 74
N5N N38 H382 SING N N 75
N5N N39 H39 SING N N 76
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
N5N SMILES ACDLabs 12.01 O=C(O)CN(C(=O)C(NS(=O)(=O)c2cc1ccccc1cc2)CC(=O)NCC3CCCN(C(=[N@H])N)C3)C4CC4
N5N InChI InChI 1.03 InChI=1S/C26H34N6O6S/c27-26(28)31-11-3-4-17(15-31)14-29-23(33)13-22(25(36)32(16-24(34)35)20-8-9-20)30-39(37,38)21-10-7-18-5-1-2-6-19(18)12-21/h1-2,5-7,10,12,17,20,22,30H,3-4,8-9,11,13-16H2,(H3,27,28)(H,29,33)(H,34,35)/t17-,22-/m0/s1
N5N InChIKey InChI 1.03 BYDKEYCXCIVOOV-JTSKRJEESA-N
N5N SMILES_CANONICAL CACTVS 3.370 NC(=N)N1CCC[C@@H](CNC(=O)C[C@H](N[S](=O)(=O)c2ccc3ccccc3c2)C(=O)N(CC(O)=O)C4CC4)C1
N5N SMILES CACTVS 3.370 NC(=N)N1CCC[CH](CNC(=O)C[CH](N[S](=O)(=O)c2ccc3ccccc3c2)C(=O)N(CC(O)=O)C4CC4)C1
N5N SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "[H]/N=C(/N)\N1CCC[C@H](C1)CNC(=O)C[C@@H](C(=O)N(CC(=O)O)C2CC2)NS(=O)(=O)c3ccc4ccccc4c3"
N5N SMILES "OpenEye OEToolkits" 1.7.6 c1ccc2cc(ccc2c1)S(=O)(=O)NC(CC(=O)NCC3CCCN(C3)C(=N)N)C(=O)N(CC(=O)O)C4CC4
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
N5N "SYSTEMATIC NAME" ACDLabs 12.01 N-{[(3S)-1-carbamimidoylpiperidin-3-yl]methyl}-N~2~-(naphthalen-2-ylsulfonyl)-L-asparaginyl-N-cyclopropylglycine
N5N "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-[[(2S)-4-[[(3S)-1-carbamimidoylpiperidin-3-yl]methylamino]-2-(naphthalen-2-ylsulfonylamino)-4-oxidanylidene-butanoyl]-cyclopropyl-amino]ethanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
N5N 'Create component' 2012-06-11 EBI
N5N 'Other modification' 2014-05-09 EBI
N5N 'Modify synonyms' 2020-06-05 PDBE
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 N5N NAPSAGATRAN ? ?
2 N5N Ro-46-6240 ? ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
N5N Ro-46-6240 ChEMBL 'Research Code'
N5N NAPSAGATRAN wwPDB ?
N5N Ro-46-6240 wwPDB ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
N5N N1 N 9.002 -4.643 1
N5N C2 C 7.702 -5.393 2
N5N C3 C 9.002 -3.143 3
N5N C4 C 10.301 -5.393 4
N5N C5 C 6.952 -6.691 5
N5N C6 C 6.202 -5.393 6
N5N C7 C 10.301 -2.393 7
N5N O8 O 7.702 -2.393 8
N5N C9 C 10.301 -6.893 9
N5N N10 N 11.600 -3.143 10
N5N C11 C 10.301 -0.892 11
N5N O12 O 9.002 -7.643 12
N5N O13 O 11.600 -7.643 13
N5N S14 S 12.899 -2.393 14
N5N C15 C 9.002 -0.142 15
N5N C16 C 14.198 -1.643 16
N5N O17 O 12.149 -1.093 17
N5N O18 O 13.649 -3.692 18
N5N N19 N 9.002 1.357 19
N5N O20 O 7.702 -0.892 20
N5N C21 C 15.497 -2.393 21
N5N C22 C 14.198 -0.142 22
N5N C23 C 7.702 2.107 23
N5N C24 C 16.796 -1.643 24
N5N C25 C 15.497 0.608 25
N5N C26 C 7.702 3.607 26
N5N C27 C 16.796 -0.142 27
N5N C28 C 18.137 -2.445 28
N5N C29 C 6.404 4.357 29
N5N C30 C 9.002 4.357 30
N5N C31 C 18.137 0.659 31
N5N C32 C 19.496 -1.674 32
N5N N33 N 6.404 5.857 33
N5N C34 C 9.002 5.857 34
N5N C35 C 19.496 -0.111 35
N5N C36 C 7.702 6.607 36
N5N C37 C 5.104 6.607 37
N5N N38 N 5.104 8.107 38
N5N N39 N 3.805 5.857 39
N5N H39 H 3.805 4.358 40
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
N5N N1 C2 SINGLE NONE 1
N5N N1 C3 SINGLE NONE 2
N5N N1 C4 SINGLE NONE 3
N5N C2 C5 SINGLE NONE 4
N5N C2 C6 SINGLE NONE 5
N5N C3 C7 SINGLE NONE 6
N5N C3 O8 DOUBLE NONE 7
N5N C4 C9 SINGLE NONE 8
N5N C5 C6 SINGLE NONE 9
N5N C7 N10 SINGLE NONE 10
N5N C7 C11 SINGLE BEGINDASH 11
N5N C9 O12 SINGLE NONE 12
N5N C9 O13 DOUBLE NONE 13
N5N N10 S14 SINGLE NONE 14
N5N C11 C15 SINGLE NONE 15
N5N S14 C16 SINGLE NONE 16
N5N S14 O17 DOUBLE NONE 17
N5N S14 O18 DOUBLE NONE 18
N5N C15 N19 SINGLE NONE 19
N5N C15 O20 DOUBLE NONE 20
N5N C16 C21 DOUBLE NONE 21
N5N C16 C22 SINGLE NONE 22
N5N N19 C23 SINGLE NONE 23
N5N C21 C24 SINGLE NONE 24
N5N C22 C25 DOUBLE NONE 25
N5N C26 C23 SINGLE BEGINWEDGE 26
N5N C24 C27 DOUBLE NONE 27
N5N C24 C28 SINGLE NONE 28
N5N C25 C27 SINGLE NONE 29
N5N C26 C29 SINGLE NONE 30
N5N C26 C30 SINGLE NONE 31
N5N C27 C31 SINGLE NONE 32
N5N C28 C32 DOUBLE NONE 33
N5N C29 N33 SINGLE NONE 34
N5N C30 C34 SINGLE NONE 35
N5N C31 C35 DOUBLE NONE 36
N5N C32 C35 SINGLE NONE 37
N5N N33 C36 SINGLE NONE 38
N5N N33 C37 SINGLE ENDUPRIGHT 39
N5N C34 C36 SINGLE NONE 40
N5N C37 N38 SINGLE ENDUPRIGHT 41
N5N C37 N39 DOUBLE NONE 42
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
N5N MurckoScaffold S1 scaffold 'O=C(C[C@H](NS(=O)(=O)c1ccc2ccccc2c1)C(=O)NC1CC1)NC[C@@H]1CCCNC1' InChI=1S/C23H30N4O4S/c28-22(25-15-16-4-3-11-24-14-16)13-21(23(29)26-19-8-9-19)27-32(30,31)20-10-7-17-5-1-2-6-18(17)12-20/h1-2,5-7,10,12,16,19,21,24,27H,3-4,8-9,11,13-15H2,(H,25,28)(H,26,29)/t16-,21+/m1/s1 ATJKFMCABKKGJW-IERDGZPVSA-N
N5N amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
N5N cyclopropane F2 fragment C1CC1 InChI=1S/C3H6/c1-2-3-1/h1-3H2 LVZWSLJZHVFIQJ-UHFFFAOYSA-N
N5N napthalene F3 fragment c1ccc2ccccc2c1 InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H UFWIBTONFRDIAS-UHFFFAOYSA-N
N5N peptide F4 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
N5N phenyl F5 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
N5N N1 S1 1
N5N C2 S1 1
N5N C3 S1 1
N5N C5 S1 1
N5N C6 S1 1
N5N C7 S1 1
N5N O8 S1 1
N5N N10 S1 1
N5N C11 S1 1
N5N S14 S1 1
N5N C15 S1 1
N5N C16 S1 1
N5N O17 S1 1
N5N O18 S1 1
N5N N19 S1 1
N5N O20 S1 1
N5N C21 S1 1
N5N C22 S1 1
N5N C23 S1 1
N5N C24 S1 1
N5N C25 S1 1
N5N C26 S1 1
N5N C27 S1 1
N5N C28 S1 1
N5N C29 S1 1
N5N C30 S1 1
N5N C31 S1 1
N5N C32 S1 1
N5N N33 S1 1
N5N C34 S1 1
N5N C35 S1 1
N5N C36 S1 1
N5N N1 F1 1
N5N C3 F1 1
N5N O8 F1 1
N5N C7 F1 1
N5N N19 F1 2
N5N C15 F1 2
N5N O20 F1 2
N5N C11 F1 2
N5N C2 F2 1
N5N C5 F2 1
N5N C6 F2 1
N5N C16 F3 1
N5N C22 F3 1
N5N C25 F3 1
N5N C27 F3 1
N5N C24 F3 1
N5N C21 F3 1
N5N C28 F3 1
N5N C32 F3 1
N5N C35 F3 1
N5N C31 F3 1
N5N O8 F4 1
N5N C3 F4 1
N5N C7 F4 1
N5N N10 F4 1
N5N O13 F4 2
N5N C9 F4 2
N5N C4 F4 2
N5N N1 F4 2
N5N C16 F5 1
N5N C21 F5 1
N5N C24 F5 1
N5N C27 F5 1
N5N C25 F5 1
N5N C22 F5 1
N5N C24 F5 2
N5N C27 F5 2
N5N C31 F5 2
N5N C35 F5 2
N5N C32 F5 2
N5N C28 F5 2
#
_pdbe_chem_comp_rdkit_properties.comp_id N5N
_pdbe_chem_comp_rdkit_properties.exactmw 558.226
_pdbe_chem_comp_rdkit_properties.amw 558.661
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 12
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 6
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 11
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 39
_pdbe_chem_comp_rdkit_properties.NumAtoms 73
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 13
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.462
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 274.771
_pdbe_chem_comp_rdkit_properties.tpsa 185.990
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.138
_pdbe_chem_comp_rdkit_properties.CrippenMR 142.630
_pdbe_chem_comp_rdkit_properties.chi0v 19.358
_pdbe_chem_comp_rdkit_properties.chi1v 11.186
_pdbe_chem_comp_rdkit_properties.chi2v 5.182
_pdbe_chem_comp_rdkit_properties.chi3v 5.182
_pdbe_chem_comp_rdkit_properties.chi4v 3.289
_pdbe_chem_comp_rdkit_properties.chi0n 52.541
_pdbe_chem_comp_rdkit_properties.chi1n 26.391
_pdbe_chem_comp_rdkit_properties.chi2n 4.039
_pdbe_chem_comp_rdkit_properties.chi3n 4.039
_pdbe_chem_comp_rdkit_properties.chi4n 2.422
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.710
_pdbe_chem_comp_rdkit_properties.kappa1 7.940
_pdbe_chem_comp_rdkit_properties.kappa2 11.993
_pdbe_chem_comp_rdkit_properties.kappa3 7.447
_pdbe_chem_comp_rdkit_properties.Phi 2.442
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
N5N UniChem ChEMBL CHEMBL325166
N5N UniChem PDBe N5N
N5N UniChem 'PubChem DOTF' 12014905
N5N UniChem fdasrs 84K87A0AJE
N5N UniChem SureChEMBL SCHEMBL7294707
N5N UniChem 'EPA CompTox Dashboard' DTXSID60873338
N5N UniChem BRENDA 16388
N5N UniChem 'Probes And Drugs' PD045484
N5N UniChem BindingDb 50037991
N5N UniChem 'PubChem TPHARMA' 14763972
N5N UniChem 'PubChem TPHARMA' 15086701
N5N UniChem PubChem 6918278
N5N UniChem Nikkaji J629.542H
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
N5N N1 -1.890 -1.182 1.455 ETKDGv3 1
N5N C2 -0.775 -1.574 0.572 ETKDGv3 2
N5N C3 -1.761 -0.059 2.365 ETKDGv3 3
N5N C4 -3.206 -1.854 1.388 ETKDGv3 4
N5N C5 -0.403 -3.053 0.610 ETKDGv3 5
N5N C6 0.472 -2.042 1.316 ETKDGv3 6
N5N C7 -0.575 0.894 2.334 ETKDGv3 7
N5N O8 -2.651 0.130 3.240 ETKDGv3 8
N5N C9 -3.389 -2.724 0.177 ETKDGv3 9
N5N N10 -1.005 2.299 2.206 ETKDGv3 10
N5N C11 0.244 0.750 3.630 ETKDGv3 11
N5N O12 -3.601 -4.090 0.333 ETKDGv3 12
N5N O13 -3.359 -2.223 -0.977 ETKDGv3 13
N5N S14 -1.164 2.792 0.546 ETKDGv3 14
N5N C15 1.600 1.369 3.465 ETKDGv3 15
N5N C16 -2.467 1.917 -0.254 ETKDGv3 16
N5N O17 -1.481 4.260 0.502 ETKDGv3 17
N5N O18 0.140 2.563 -0.168 ETKDGv3 18
N5N N19 2.689 0.577 2.971 ETKDGv3 19
N5N O20 1.758 2.597 3.703 ETKDGv3 20
N5N C21 -2.272 1.339 -1.450 ETKDGv3 21
N5N C22 -3.809 1.878 0.370 ETKDGv3 22
N5N C23 3.929 1.159 2.458 ETKDGv3 23
N5N C24 -3.389 0.653 -2.136 ETKDGv3 24
N5N C25 -4.824 1.262 -0.247 ETKDGv3 25
N5N C26 4.301 0.527 1.103 ETKDGv3 26
N5N C27 -4.611 0.616 -1.560 ETKDGv3 27
N5N C28 -3.172 -0.001 -3.447 ETKDGv3 28
N5N C29 3.243 0.828 0.025 ETKDGv3 29
N5N C30 5.711 0.979 0.649 ETKDGv3 30
N5N C31 -5.726 -0.080 -2.243 ETKDGv3 31
N5N C32 -4.185 -0.630 -4.057 ETKDGv3 32
N5N N33 3.594 0.140 -1.228 ETKDGv3 33
N5N C34 5.892 0.998 -0.881 ETKDGv3 34
N5N C35 -5.521 -0.671 -3.427 ETKDGv3 35
N5N C36 5.009 -0.033 -1.592 ETKDGv3 36
N5N C37 2.555 -0.342 -2.106 ETKDGv3 37
N5N N38 2.824 -1.382 -3.054 ETKDGv3 38
N5N N39 1.364 0.165 -2.036 ETKDGv3 39
N5N H2 -0.613 -1.010 -0.369 ETKDGv3 40
N5N H41C -3.346 -2.464 2.305 ETKDGv3 41
N5N H42C -4.013 -1.090 1.365 ETKDGv3 42
N5N H51C 0.032 -3.442 -0.335 ETKDGv3 43
N5N H52C -0.976 -3.694 1.313 ETKDGv3 44
N5N H61C 0.399 -2.117 2.420 ETKDGv3 45
N5N H62C 1.432 -1.848 0.793 ETKDGv3 46
N5N H7 0.093 0.634 1.489 ETKDGv3 47
N5N H10 -1.911 2.471 2.698 ETKDGv3 48
N5N H111 -0.290 1.237 4.476 ETKDGv3 49
N5N H112 0.367 -0.320 3.899 ETKDGv3 50
N5N H12 -3.726 -4.692 -0.472 ETKDGv3 51
N5N H19 2.598 -0.464 2.988 ETKDGv3 52
N5N H21 -1.303 1.380 -1.929 ETKDGv3 53
N5N H22 -3.975 2.352 1.328 ETKDGv3 54
N5N H231 4.739 0.962 3.193 ETKDGv3 55
N5N H232 3.832 2.260 2.339 ETKDGv3 56
N5N H25 -5.801 1.237 0.220 ETKDGv3 57
N5N H26 4.331 -0.578 1.239 ETKDGv3 58
N5N H28 -2.195 0.023 -3.913 ETKDGv3 59
N5N H291 2.253 0.476 0.384 ETKDGv3 60
N5N H292 3.176 1.922 -0.160 ETKDGv3 61
N5N H301 6.464 0.293 1.096 ETKDGv3 62
N5N H302 5.936 1.999 1.031 ETKDGv3 63
N5N H31 -6.707 -0.116 -1.787 ETKDGv3 64
N5N H32 -4.027 -1.111 -5.014 ETKDGv3 65
N5N H341 6.959 0.814 -1.133 ETKDGv3 66
N5N H342 5.628 2.009 -1.264 ETKDGv3 67
N5N H35 -6.334 -1.182 -3.926 ETKDGv3 68
N5N H361 5.138 0.106 -2.688 ETKDGv3 69
N5N H362 5.337 -1.060 -1.322 ETKDGv3 70
N5N H381 2.081 -1.706 -3.713 ETKDGv3 71
N5N H382 3.744 -1.873 -3.077 ETKDGv3 72
N5N H39 0.589 -0.163 -2.655 ETKDGv3 73
#