data_N74
#
_chem_comp.id N74
_chem_comp.name "N-(1-benzyl-1H-pyrazol-4-yl)-N'-(5-methyl-1,2-oxazol-3-yl)urea"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C15 H15 N5 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-05-03
_chem_comp.pdbx_modified_date 2019-12-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 297.312
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code N74
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5QQM
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
N74 N1 N1 N 0 1 N N N N N N -5.189 11.783 32.970 0.918 1.570 -0.144 N1 N74 1
N74 N3 N2 N 0 1 Y N N N N N -3.875 9.931 35.645 -2.465 0.928 0.755 N3 N74 2
N74 C4 C1 C 0 1 N N N N N N -4.548 12.093 31.787 2.015 0.791 -0.057 C4 N74 3
N74 C5 C2 C 0 1 Y N N N N N -4.518 11.212 33.993 -0.330 1.079 0.286 C5 N74 4
N74 C6 C3 C 0 1 Y N N N N N -3.116 11.410 34.316 -0.578 -0.196 0.817 C6 N74 5
N74 C7 C4 C 0 1 N N N N N N -3.636 8.764 36.438 -3.886 1.250 0.909 C7 N74 6
N74 C8 C5 C 0 1 Y N N N N N -2.704 7.772 35.678 -4.716 0.214 0.195 C8 N74 7
N74 C10 C6 C 0 1 Y N N N N N -2.338 5.453 34.968 -5.822 -0.551 -1.786 C10 N74 8
N74 C13 C7 C 0 1 Y N N N N N -1.521 8.144 34.971 -5.137 -0.918 0.868 C13 N74 9
N74 N N3 N 0 1 N N N N N N -5.427 12.677 30.805 3.209 1.261 -0.468 N N74 10
N74 C C8 C 0 1 N N N N N N -2.463 13.775 27.013 6.351 -2.517 0.373 C N74 11
N74 O O1 O 0 1 N N N N N N -3.281 11.836 31.567 1.927 -0.335 0.391 O N74 12
N74 C1 C9 C 0 1 Y N N N N N -3.529 13.616 27.927 5.714 -1.205 -0.008 C1 N74 13
N74 C11 C10 C 0 1 Y N N N N N -1.198 5.834 34.265 -6.238 -1.686 -1.115 C11 N74 14
N74 C12 C11 C 0 1 Y N N N N N -0.796 7.179 34.250 -5.898 -1.868 0.213 C12 N74 15
N74 C14 C12 C 0 1 Y N N N N N -5.024 10.253 34.916 -1.507 1.754 0.259 C14 N74 16
N74 C2 C13 C 0 1 Y N N N N N -3.560 13.002 29.138 4.409 -0.873 0.118 C2 N74 17
N74 C3 C14 C 0 1 Y N N N N N -4.926 13.069 29.589 4.344 0.456 -0.379 C3 N74 18
N74 C9 C15 C 0 1 Y N N N N N -3.093 6.415 35.657 -5.060 0.399 -1.131 C9 N74 19
N74 N2 N4 N 0 1 Y N N N N N -2.778 10.640 35.333 -1.852 -0.284 1.099 N2 N74 20
N74 N4 N5 N 0 1 Y N N N N N -5.667 13.695 28.651 5.561 0.772 -0.736 N4 N74 21
N74 O1 O2 O 0 1 Y N N N N N -4.771 14.075 27.573 6.332 -0.137 -0.532 O1 N74 22
N74 H1 H1 H 0 1 N N N N N N -6.163 11.984 33.070 0.989 2.470 -0.498 H1 N74 23
N74 H2 H2 H 0 1 N N N N N N -2.450 12.086 33.801 0.158 -0.972 0.967 H2 N74 24
N74 H3 H3 H 0 1 N N N N N N -3.157 9.060 37.383 -4.144 1.256 1.968 H3 N74 25
N74 H4 H4 H 0 1 N N N N N N -4.595 8.269 36.652 -4.084 2.233 0.481 H4 N74 26
N74 H5 H5 H 0 1 N N N N N N -2.641 4.417 34.983 -6.091 -0.407 -2.822 H5 N74 27
N74 H6 H6 H 0 1 N N N N N N -1.182 9.169 34.990 -4.871 -1.059 1.905 H6 N74 28
N74 H7 H7 H 0 1 N N N N N N -6.399 12.796 31.009 3.279 2.160 -0.827 H7 N74 29
N74 H8 H8 H 0 1 N N N N N N -2.830 14.275 26.105 6.321 -3.196 -0.479 H8 N74 30
N74 H9 H9 H 0 1 N N N N N N -1.673 14.385 27.474 7.387 -2.347 0.666 H9 N74 31
N74 H10 H10 H 0 1 N N N N N N -2.056 12.788 26.749 5.805 -2.957 1.207 H10 N74 32
N74 H11 H11 H 0 1 N N N N N N -0.622 5.093 33.730 -6.833 -2.428 -1.626 H11 N74 33
N74 H12 H12 H 0 1 N N N N N N 0.074 7.474 33.682 -6.226 -2.752 0.738 H12 N74 34
N74 H13 H13 H 0 1 N N N N N N -6.030 9.874 35.024 -1.655 2.765 -0.092 H13 N74 35
N74 H14 H14 H 0 1 N N N N N N -2.727 12.553 29.659 3.603 -1.479 0.506 H14 N74 36
N74 H15 H15 H 0 1 N N N N N N -3.988 6.112 36.181 -4.736 1.286 -1.655 H15 N74 37
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
N74 C C1 SING N N 1
N74 O1 C1 SING Y N 2
N74 O1 N4 SING Y N 3
N74 C1 C2 DOUB Y N 4
N74 N4 C3 DOUB Y N 5
N74 C2 C3 SING Y N 6
N74 C3 N SING N N 7
N74 N C4 SING N N 8
N74 O C4 DOUB N N 9
N74 C4 N1 SING N N 10
N74 N1 C5 SING N N 11
N74 C5 C6 SING Y N 12
N74 C5 C14 DOUB Y N 13
N74 C12 C11 DOUB Y N 14
N74 C12 C13 SING Y N 15
N74 C11 C10 SING Y N 16
N74 C6 N2 DOUB Y N 17
N74 C14 N3 SING Y N 18
N74 C10 C9 DOUB Y N 19
N74 C13 C8 DOUB Y N 20
N74 N2 N3 SING Y N 21
N74 N3 C7 SING N N 22
N74 C9 C8 SING Y N 23
N74 C8 C7 SING N N 24
N74 N1 H1 SING N N 25
N74 C6 H2 SING N N 26
N74 C7 H3 SING N N 27
N74 C7 H4 SING N N 28
N74 C10 H5 SING N N 29
N74 C13 H6 SING N N 30
N74 N H7 SING N N 31
N74 C H8 SING N N 32
N74 C H9 SING N N 33
N74 C H10 SING N N 34
N74 C11 H11 SING N N 35
N74 C12 H12 SING N N 36
N74 C14 H13 SING N N 37
N74 C2 H14 SING N N 38
N74 C9 H15 SING N N 39
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
N74 SMILES ACDLabs 12.01 N(c2cnn(Cc1ccccc1)c2)C(Nc3cc(C)on3)=O
N74 InChI InChI 1.03 InChI=1S/C15H15N5O2/c1-11-7-14(19-22-11)18-15(21)17-13-8-16-20(10-13)9-12-5-3-2-4-6-12/h2-8,10H,9H2,1H3,(H2,17,18,19,21)
N74 InChIKey InChI 1.03 HPOHLKVNAQMNHB-UHFFFAOYSA-N
N74 SMILES_CANONICAL CACTVS 3.385 Cc1onc(NC(=O)Nc2cnn(Cc3ccccc3)c2)c1
N74 SMILES CACTVS 3.385 Cc1onc(NC(=O)Nc2cnn(Cc3ccccc3)c2)c1
N74 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 Cc1cc(no1)NC(=O)Nc2cnn(c2)Cc3ccccc3
N74 SMILES "OpenEye OEToolkits" 2.0.6 Cc1cc(no1)NC(=O)Nc2cnn(c2)Cc3ccccc3
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
N74 "SYSTEMATIC NAME" ACDLabs 12.01 "N-(1-benzyl-1H-pyrazol-4-yl)-N'-(5-methyl-1,2-oxazol-3-yl)urea"
N74 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 1-(5-methyl-1,2-oxazol-3-yl)-3-[1-(phenylmethyl)pyrazol-4-yl]urea
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
N74 'Create component' 2019-05-03 RCSB
N74 'Initial release' 2019-12-18 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
N74 N1 N 7.832 2.375 1
N74 N3 N 5.598 -0.799 2
N74 C4 C 9.324 2.531 3
N74 C5 C 7.222 1.004 4
N74 C6 C 7.972 -0.295 5
N74 C7 C 4.299 -1.549 6
N74 C8 C 4.299 -3.049 7
N74 C10 C 5.598 -5.299 8
N74 C13 C 3.000 -3.799 9
N74 N N 9.934 3.902 10
N74 C C 14.758 6.049 11
N74 O O 10.206 1.318 12
N74 C1 C 13.643 5.046 13
N74 C11 C 4.299 -6.049 14
N74 C12 C 3.000 -5.299 15
N74 C14 C 5.755 0.692 16
N74 C2 C 12.176 5.357 17
N74 C3 C 11.426 4.059 18
N74 C9 C 5.598 -3.799 19
N74 N2 N 6.968 -1.409 20
N74 N4 N 12.430 2.944 21
N74 O1 O 13.800 3.554 22
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
N74 C C1 SINGLE NONE 1
N74 O1 C1 SINGLE NONE 2
N74 O1 N4 SINGLE NONE 3
N74 C1 C2 DOUBLE NONE 4
N74 N4 C3 DOUBLE NONE 5
N74 C2 C3 SINGLE NONE 6
N74 C3 N SINGLE NONE 7
N74 N C4 SINGLE NONE 8
N74 O C4 DOUBLE NONE 9
N74 C4 N1 SINGLE NONE 10
N74 N1 C5 SINGLE NONE 11
N74 C5 C6 SINGLE NONE 12
N74 C5 C14 DOUBLE NONE 13
N74 C12 C11 SINGLE NONE 14
N74 C12 C13 DOUBLE NONE 15
N74 C11 C10 DOUBLE NONE 16
N74 C6 N2 DOUBLE NONE 17
N74 C14 N3 SINGLE NONE 18
N74 C10 C9 SINGLE NONE 19
N74 C13 C8 SINGLE NONE 20
N74 N2 N3 SINGLE NONE 21
N74 N3 C7 SINGLE NONE 22
N74 C9 C8 DOUBLE NONE 23
N74 C8 C7 SINGLE NONE 24
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
N74 MurckoScaffold S1 scaffold O=C(Nc1cnn(Cc2ccccc2)c1)Nc1ccon1 InChI=1S/C14H13N5O2/c20-14(17-13-6-7-21-18-13)16-12-8-15-19(10-12)9-11-4-2-1-3-5-11/h1-8,10H,9H2,(H2,16,17,18,20) QRFBCGAFILQBCC-UHFFFAOYSA-N
N74 isoxazole F1 fragment c1cnoc1 InChI=1S/C3H3NO/c1-2-4-5-3-1/h1-3H CTAPFRYPJLPFDF-UHFFFAOYSA-N
N74 phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
N74 pyrazole F3 fragment 'c1cn[nH]c1' InChI=1S/C3H4N2/c1-2-4-5-3-1/h1-3H,(H,4,5) WTKZEGDFNFYCGP-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
N74 N1 S1 1
N74 N3 S1 1
N74 C4 S1 1
N74 C5 S1 1
N74 C6 S1 1
N74 C7 S1 1
N74 C8 S1 1
N74 C10 S1 1
N74 C13 S1 1
N74 N S1 1
N74 O S1 1
N74 C1 S1 1
N74 C11 S1 1
N74 C12 S1 1
N74 C14 S1 1
N74 C2 S1 1
N74 C3 S1 1
N74 C9 S1 1
N74 N2 S1 1
N74 N4 S1 1
N74 O1 S1 1
N74 C1 F1 1
N74 C2 F1 1
N74 C3 F1 1
N74 N4 F1 1
N74 O1 F1 1
N74 C8 F2 1
N74 C13 F2 1
N74 C12 F2 1
N74 C11 F2 1
N74 C10 F2 1
N74 C9 F2 1
N74 C6 F3 1
N74 C5 F3 1
N74 C14 F3 1
N74 N3 F3 1
N74 N2 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id N74
_pdbe_chem_comp_rdkit_properties.exactmw 297.123
_pdbe_chem_comp_rdkit_properties.amw 297.318
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 5
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 22
_pdbe_chem_comp_rdkit_properties.NumAtoms 37
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.133
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 147.665
_pdbe_chem_comp_rdkit_properties.tpsa 84.980
_pdbe_chem_comp_rdkit_properties.CrippenClogP 2.001
_pdbe_chem_comp_rdkit_properties.CrippenMR 79.472
_pdbe_chem_comp_rdkit_properties.chi0v 10.553
_pdbe_chem_comp_rdkit_properties.chi1v 5.580
_pdbe_chem_comp_rdkit_properties.chi2v 2.043
_pdbe_chem_comp_rdkit_properties.chi3v 2.043
_pdbe_chem_comp_rdkit_properties.chi4v 1.258
_pdbe_chem_comp_rdkit_properties.chi0n 25.553
_pdbe_chem_comp_rdkit_properties.chi1n 12.974
_pdbe_chem_comp_rdkit_properties.chi2n 2.043
_pdbe_chem_comp_rdkit_properties.chi3n 2.043
_pdbe_chem_comp_rdkit_properties.chi4n 1.258
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.090
_pdbe_chem_comp_rdkit_properties.kappa1 4.704
_pdbe_chem_comp_rdkit_properties.kappa2 6.128
_pdbe_chem_comp_rdkit_properties.kappa3 3.512
_pdbe_chem_comp_rdkit_properties.Phi 1.310
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
N74 UniChem PDBe N74
N74 UniChem ZINC ZINC000056343335
N74 UniChem Mcule MCULE-2199221397
N74 UniChem eMolecules 33311049
N74 UniChem PubChem 51088894
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
N74 N1 1.047 -0.154 -1.731 ETKDGv3 1
N74 N3 -1.772 -2.128 -0.602 ETKDGv3 2
N74 C4 1.992 0.261 -0.732 ETKDGv3 3
N74 C5 -0.058 -1.039 -1.494 ETKDGv3 4
N74 C6 -0.857 -1.692 -2.530 ETKDGv3 5
N74 C7 -2.873 -2.389 0.316 ETKDGv3 6
N74 C8 -3.822 -1.224 0.321 ETKDGv3 7
N74 C10 -5.721 0.025 -0.591 ETKDGv3 8
N74 C13 -3.611 -0.103 1.272 ETKDGv3 9
N74 N 2.927 1.305 -1.040 ETKDGv3 10
N74 C 6.534 1.339 2.454 ETKDGv3 11
N74 O 2.000 -0.289 0.402 ETKDGv3 12
N74 C1 5.605 1.674 1.337 ETKDGv3 13
N74 C11 -5.532 1.026 0.277 ETKDGv3 14
N74 C12 -4.424 0.960 1.251 ETKDGv3 15
N74 C14 -0.650 -1.297 -0.335 ETKDGv3 16
N74 C2 4.591 0.932 0.920 ETKDGv3 17
N74 C3 4.029 1.689 -0.204 ETKDGv3 18
N74 C9 -4.822 -1.149 -0.576 ETKDGv3 19
N74 N2 -1.855 -2.310 -1.987 ETKDGv3 20
N74 N4 4.704 2.774 -0.404 ETKDGv3 21
N74 O1 5.697 2.808 0.545 ETKDGv3 22
N74 H1 1.198 0.172 -2.711 ETKDGv3 23
N74 H2 -0.679 -1.659 -3.596 ETKDGv3 24
N74 H3 -2.471 -2.558 1.338 ETKDGv3 25
N74 H4 -3.398 -3.319 0.010 ETKDGv3 26
N74 H5 -6.530 0.073 -1.309 ETKDGv3 27
N74 H6 -2.796 -0.142 1.984 ETKDGv3 28
N74 H7 2.780 1.846 -1.922 ETKDGv3 29
N74 H8 5.954 1.053 3.356 ETKDGv3 30
N74 H9 7.189 0.494 2.154 ETKDGv3 31
N74 H10 7.165 2.220 2.695 ETKDGv3 32
N74 H11 -6.188 1.887 0.265 ETKDGv3 33
N74 H12 -4.269 1.776 1.945 ETKDGv3 34
N74 H13 -0.399 -0.892 0.635 ETKDGv3 35
N74 H14 4.294 -0.027 1.319 ETKDGv3 36
N74 H15 -4.978 -1.941 -1.298 ETKDGv3 37
#