data_N8A
#
_chem_comp.id N8A
_chem_comp.name 4-hydroxy-3-({[2-(pyridin-2-yl)ethyl]carbamoyl}amino)benzene-1-sulfonamide
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C14 H16 N4 O4 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-05-06
_chem_comp.pdbx_modified_date 2020-05-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 336.366
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code N8A
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6OTP
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
N8A CAS C1 C 0 1 Y N N N N N -1.768 7.397 13.272 -6.311 0.561 0.631 CAS N8A 1
N8A CAT C2 C 0 1 Y N N N N N -1.700 8.253 14.362 -7.344 -0.303 0.963 CAT N8A 2
N8A CAU C3 C 0 1 Y N N N N N -0.636 9.140 14.405 -7.307 -1.597 0.467 CAU N8A 3
N8A CAV C4 C 0 1 Y N N N N N 0.296 9.105 13.371 -6.251 -1.981 -0.336 CAV N8A 4
N8A NAW N1 N 0 1 Y N N N N N 0.200 8.260 12.350 -5.285 -1.133 -0.631 NAW N8A 5
N8A CAR C5 C 0 1 Y N N N N N -0.798 7.393 12.271 -5.289 0.107 -0.182 CAR N8A 6
N8A CAQ C6 C 0 1 N N N N N N -0.891 6.423 11.061 -4.161 1.036 -0.549 CAQ N8A 7
N8A CAP C7 C 0 1 N N N N N N -0.410 4.954 11.232 -2.827 0.401 -0.153 CAP N8A 8
N8A NAN N2 N 0 1 N N N N N N -0.703 4.577 12.594 -1.730 1.304 -0.509 NAN N8A 9
N8A CAM C8 C 0 1 N N N N N N -2.072 4.421 12.999 -0.456 0.951 -0.252 CAM N8A 10
N8A OAO O1 O 0 1 N N N N N N -2.971 4.540 12.230 -0.216 -0.118 0.276 OAO N8A 11
N8A NAL N3 N 0 1 N N N N N N -2.296 4.121 14.381 0.553 1.782 -0.580 NAL N8A 12
N8A CAC C9 C 0 1 Y N N N N N -3.660 3.982 14.832 1.871 1.458 -0.229 CAC N8A 13
N8A CAD C10 C 0 1 Y N N N N N -4.028 2.838 15.473 2.284 0.134 -0.227 CAD N8A 14
N8A CAB C11 C 0 1 Y N N N N N -4.576 5.010 14.659 2.770 2.465 0.114 CAB N8A 15
N8A OAK O2 O 0 1 N N N N N N -4.220 6.209 14.040 2.372 3.765 0.109 OAK N8A 16
N8A CAA C12 C 0 1 Y N N N N N -5.878 4.875 15.094 4.071 2.138 0.460 CAA N8A 17
N8A CAF C13 C 0 1 Y N N N N N -6.238 3.722 15.744 4.475 0.816 0.465 CAF N8A 18
N8A CAE C14 C 0 1 Y N N N N N -5.312 2.711 15.903 3.584 -0.184 0.120 CAE N8A 19
N8A SAG S1 S 0 1 N N N N N N -5.829 1.215 16.739 4.107 -1.866 0.122 SAG N8A 20
N8A OAH O3 O 0 1 N N N N N N -7.433 1.187 16.645 5.218 -1.940 1.005 OAH N8A 21
N8A OAI O4 O 0 1 N N N N N N -5.300 1.284 18.246 2.934 -2.651 0.283 OAI N8A 22
N8A NAJ N4 N 0 1 N N N N N N -5.242 -0.109 15.895 4.689 -2.201 -1.392 NAJ N8A 23
N8A H1 H1 H 0 1 N N N N N N -2.599 6.712 13.197 -6.307 1.576 0.999 H1 N8A 24
N8A H2 H2 H 0 1 N N N N N N -2.445 8.229 15.144 -8.157 0.025 1.594 H2 N8A 25
N8A H3 H3 H 0 1 N N N N N N -0.532 9.841 15.220 -8.095 -2.296 0.706 H3 N8A 26
N8A H4 H4 H 0 1 N N N N N N 1.129 9.791 13.400 -6.215 -2.987 -0.726 H4 N8A 27
N8A H5 H5 H 0 1 N N N N N N -0.296 6.864 10.248 -4.173 1.215 -1.625 H5 N8A 28
N8A H6 H6 H 0 1 N N N N N N -1.949 6.383 10.761 -4.284 1.982 -0.023 H6 N8A 29
N8A H7 H7 H 0 1 N N N N N N -0.946 4.296 10.533 -2.816 0.222 0.923 H7 N8A 30
N8A H8 H8 H 0 1 N N N N N N 0.672 4.885 11.044 -2.705 -0.546 -0.679 H8 N8A 31
N8A H9 H9 H 0 1 N N N N N N 0.038 4.426 13.248 -1.922 2.156 -0.931 H9 N8A 32
N8A H10 H10 H 0 1 N N N N N N -1.530 4.011 15.015 0.368 2.605 -1.060 H10 N8A 33
N8A H11 H11 H 0 1 N N N N N N -3.313 2.046 15.637 1.591 -0.649 -0.496 H11 N8A 34
N8A H12 H12 H 0 1 N N N N N N -3.705 6.024 13.263 2.014 4.070 0.954 H12 N8A 35
N8A H13 H13 H 0 1 N N N N N N -6.599 5.661 14.926 4.771 2.917 0.726 H13 N8A 36
N8A H14 H14 H 0 1 N N N N N N -7.240 3.606 16.129 5.489 0.563 0.736 H14 N8A 37
N8A H15 H15 H 0 1 N N N N N N -5.526 -0.950 16.355 5.391 -2.861 -1.507 H15 N8A 38
N8A H16 H16 H 0 1 N N N N N N -5.606 -0.099 14.964 4.329 -1.736 -2.163 H16 N8A 39
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
N8A CAQ CAP SING N N 1
N8A CAQ CAR SING N N 2
N8A CAP NAN SING N N 3
N8A OAO CAM DOUB N N 4
N8A CAR NAW DOUB Y N 5
N8A CAR CAS SING Y N 6
N8A NAW CAV SING Y N 7
N8A NAN CAM SING N N 8
N8A CAM NAL SING N N 9
N8A CAS CAT DOUB Y N 10
N8A CAV CAU DOUB Y N 11
N8A OAK CAB SING N N 12
N8A CAT CAU SING Y N 13
N8A NAL CAC SING N N 14
N8A CAB CAC DOUB Y N 15
N8A CAB CAA SING Y N 16
N8A CAC CAD SING Y N 17
N8A CAA CAF DOUB Y N 18
N8A CAD CAE DOUB Y N 19
N8A CAF CAE SING Y N 20
N8A NAJ SAG SING N N 21
N8A CAE SAG SING N N 22
N8A OAH SAG DOUB N N 23
N8A SAG OAI DOUB N N 24
N8A CAS H1 SING N N 25
N8A CAT H2 SING N N 26
N8A CAU H3 SING N N 27
N8A CAV H4 SING N N 28
N8A CAQ H5 SING N N 29
N8A CAQ H6 SING N N 30
N8A CAP H7 SING N N 31
N8A CAP H8 SING N N 32
N8A NAN H9 SING N N 33
N8A NAL H10 SING N N 34
N8A CAD H11 SING N N 35
N8A OAK H12 SING N N 36
N8A CAA H13 SING N N 37
N8A CAF H14 SING N N 38
N8A NAJ H15 SING N N 39
N8A NAJ H16 SING N N 40
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
N8A SMILES ACDLabs 12.01 c1cccnc1CCNC(Nc2cc(ccc2O)S(=O)(=O)N)=O
N8A InChI InChI 1.03 InChI=1S/C14H16N4O4S/c15-23(21,22)11-4-5-13(19)12(9-11)18-14(20)17-8-6-10-3-1-2-7-16-10/h1-5,7,9,19H,6,8H2,(H2,15,21,22)(H2,17,18,20)
N8A InChIKey InChI 1.03 BTQJGTGBPQIYNN-UHFFFAOYSA-N
N8A SMILES_CANONICAL CACTVS 3.385 N[S](=O)(=O)c1ccc(O)c(NC(=O)NCCc2ccccn2)c1
N8A SMILES CACTVS 3.385 N[S](=O)(=O)c1ccc(O)c(NC(=O)NCCc2ccccn2)c1
N8A SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 c1ccnc(c1)CCNC(=O)Nc2cc(ccc2O)S(=O)(=O)N
N8A SMILES "OpenEye OEToolkits" 2.0.7 c1ccnc(c1)CCNC(=O)Nc2cc(ccc2O)S(=O)(=O)N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
N8A "SYSTEMATIC NAME" ACDLabs 12.01 4-hydroxy-3-({[2-(pyridin-2-yl)ethyl]carbamoyl}amino)benzene-1-sulfonamide
N8A "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 1-(2-oxidanyl-5-sulfamoyl-phenyl)-3-(2-pyridin-2-ylethyl)urea
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
N8A 'Create component' 2019-05-06 RCSB
N8A 'Initial release' 2020-05-06 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
N8A CAS C 10.301 6.090 1
N8A CAT C 11.600 6.840 2
N8A CAU C 12.899 6.090 3
N8A CAV C 12.899 4.590 4
N8A NAW N 11.600 3.840 5
N8A CAR C 10.301 4.590 6
N8A CAQ C 9.002 3.840 7
N8A CAP C 9.002 2.340 8
N8A NAN N 7.702 1.590 9
N8A CAM C 7.702 0.090 10
N8A OAO O 9.002 -0.660 11
N8A NAL N 6.404 -0.660 12
N8A CAC C 6.404 -2.160 13
N8A CAD C 7.702 -2.910 14
N8A CAB C 5.104 -2.910 15
N8A OAK O 3.805 -2.160 16
N8A CAA C 5.104 -4.410 17
N8A CAF C 6.404 -5.160 18
N8A CAE C 7.702 -4.410 19
N8A SAG S 9.002 -5.160 20
N8A OAH O 9.752 -3.861 21
N8A OAI O 10.301 -5.910 22
N8A NAJ N 8.252 -6.459 23
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
N8A CAQ CAP SINGLE NONE 1
N8A CAQ CAR SINGLE NONE 2
N8A CAP NAN SINGLE NONE 3
N8A OAO CAM DOUBLE NONE 4
N8A CAR NAW SINGLE NONE 5
N8A CAR CAS DOUBLE NONE 6
N8A NAW CAV DOUBLE NONE 7
N8A NAN CAM SINGLE NONE 8
N8A CAM NAL SINGLE NONE 9
N8A CAS CAT SINGLE NONE 10
N8A CAV CAU SINGLE NONE 11
N8A OAK CAB SINGLE NONE 12
N8A CAT CAU DOUBLE NONE 13
N8A NAL CAC SINGLE NONE 14
N8A CAB CAC SINGLE NONE 15
N8A CAB CAA DOUBLE NONE 16
N8A CAC CAD DOUBLE NONE 17
N8A CAA CAF SINGLE NONE 18
N8A CAD CAE SINGLE NONE 19
N8A CAF CAE DOUBLE NONE 20
N8A NAJ SAG SINGLE NONE 21
N8A CAE SAG SINGLE NONE 22
N8A OAH SAG DOUBLE NONE 23
N8A SAG OAI DOUBLE NONE 24
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
N8A MurckoScaffold S1 scaffold O=C(NCCc1ccccn1)Nc1ccccc1 InChI=1S/C14H15N3O/c18-14(17-13-7-2-1-3-8-13)16-11-9-12-6-4-5-10-15-12/h1-8,10H,9,11H2,(H2,16,17,18) SZOPTIPQFBEPSR-UHFFFAOYSA-N
N8A phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
N8A pyridine F2 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
N8A CAS S1 1
N8A CAT S1 1
N8A CAU S1 1
N8A CAV S1 1
N8A NAW S1 1
N8A CAR S1 1
N8A CAQ S1 1
N8A CAP S1 1
N8A NAN S1 1
N8A CAM S1 1
N8A OAO S1 1
N8A NAL S1 1
N8A CAC S1 1
N8A CAD S1 1
N8A CAB S1 1
N8A CAA S1 1
N8A CAF S1 1
N8A CAE S1 1
N8A CAC F1 1
N8A CAB F1 1
N8A CAA F1 1
N8A CAF F1 1
N8A CAE F1 1
N8A CAD F1 1
N8A CAV F2 1
N8A CAU F2 1
N8A CAT F2 1
N8A CAS F2 1
N8A CAR F2 1
N8A NAW F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id N8A
_pdbe_chem_comp_rdkit_properties.exactmw 336.089
_pdbe_chem_comp_rdkit_properties.amw 336.373
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 7
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 23
_pdbe_chem_comp_rdkit_properties.NumAtoms 39
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.143
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 155.758
_pdbe_chem_comp_rdkit_properties.tpsa 134.410
_pdbe_chem_comp_rdkit_properties.CrippenClogP -0.207
_pdbe_chem_comp_rdkit_properties.CrippenMR 83.312
_pdbe_chem_comp_rdkit_properties.chi0v 11.647
_pdbe_chem_comp_rdkit_properties.chi1v 6.910
_pdbe_chem_comp_rdkit_properties.chi2v 2.715
_pdbe_chem_comp_rdkit_properties.chi3v 2.715
_pdbe_chem_comp_rdkit_properties.chi4v 1.520
_pdbe_chem_comp_rdkit_properties.chi0n 26.830
_pdbe_chem_comp_rdkit_properties.chi1n 13.167
_pdbe_chem_comp_rdkit_properties.chi2n 1.995
_pdbe_chem_comp_rdkit_properties.chi3n 1.995
_pdbe_chem_comp_rdkit_properties.chi4n 1.115
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.650
_pdbe_chem_comp_rdkit_properties.kappa1 5.462
_pdbe_chem_comp_rdkit_properties.kappa2 7.074
_pdbe_chem_comp_rdkit_properties.kappa3 4.937
_pdbe_chem_comp_rdkit_properties.Phi 1.680
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
N8A UniChem PDBe N8A
N8A UniChem PubChem 146027007
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
N8A CAS -5.509 -0.208 -0.826 ETKDGv3 1
N8A CAT -6.874 -0.301 -0.272 ETKDGv3 2
N8A CAU -7.072 -0.127 1.039 ETKDGv3 3
N8A CAV -5.917 0.154 1.912 ETKDGv3 4
N8A NAW -4.720 0.236 1.405 ETKDGv3 5
N8A CAR -4.480 0.064 -0.005 ETKDGv3 6
N8A CAQ -3.072 0.130 -0.524 ETKDGv3 7
N8A CAP -2.430 -1.260 -0.517 ETKDGv3 8
N8A NAN -1.065 -1.195 -1.035 ETKDGv3 9
N8A CAM 0.030 -0.679 -0.266 ETKDGv3 10
N8A OAO -0.164 -0.259 0.908 ETKDGv3 11
N8A NAL 1.338 -0.613 -0.850 ETKDGv3 12
N8A CAC 2.514 -0.257 -0.106 ETKDGv3 13
N8A CAD 3.388 0.617 -0.633 ETKDGv3 14
N8A CAB 2.813 -0.886 1.211 ETKDGv3 15
N8A OAK 1.965 -1.865 1.727 ETKDGv3 16
N8A CAA 3.918 -0.528 1.884 ETKDGv3 17
N8A CAF 4.852 0.463 1.313 ETKDGv3 18
N8A CAE 4.605 1.009 0.114 ETKDGv3 19
N8A SAG 5.732 2.168 -0.583 ETKDGv3 20
N8A OAH 6.284 3.052 0.500 ETKDGv3 21
N8A OAI 5.022 3.026 -1.592 ETKDGv3 22
N8A NAJ 7.025 1.319 -1.353 ETKDGv3 23
N8A H1 -5.351 -0.364 -1.886 ETKDGv3 24
N8A H2 -7.709 -0.512 -0.926 ETKDGv3 25
N8A H3 -8.068 -0.194 1.457 ETKDGv3 26
N8A H4 -6.062 0.291 2.975 ETKDGv3 27
N8A H5 -2.485 0.820 0.117 ETKDGv3 28
N8A H6 -3.062 0.541 -1.558 ETKDGv3 29
N8A H7 -2.423 -1.681 0.512 ETKDGv3 30
N8A H8 -3.029 -1.941 -1.162 ETKDGv3 31
N8A H9 -0.871 -1.597 -1.979 ETKDGv3 32
N8A H10 1.414 -0.698 -1.889 ETKDGv3 33
N8A H11 3.192 1.057 -1.603 ETKDGv3 34
N8A H12 2.146 -2.317 2.616 ETKDGv3 35
N8A H13 4.148 -0.979 2.841 ETKDGv3 36
N8A H14 5.742 0.729 1.868 ETKDGv3 37
N8A H15 6.602 0.751 -2.121 ETKDGv3 38
N8A H16 7.634 2.036 -1.809 ETKDGv3 39
#