data_NBL
#
_chem_comp.id NBL
_chem_comp.name N2-[(BENZYLOXY)CARBONYL]-N1-[(3S)-1-CYANOPYRROLIDIN-3-YL]-L-LEUCINAMIDE
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C19 H26 N4 O3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2005-01-31
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 358.435
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code NBL
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1YK7
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NBL C1 C1 C 0 1 N N N N N N 75.631 -127.722 35.302 -2.065 2.793 1.785 C1 NBL 1
NBL C2 C2 C 0 1 N N N N N N 75.927 -128.357 33.936 -1.951 2.993 0.273 C2 NBL 2
NBL C3 C3 C 0 1 N N N N N N 77.109 -129.303 34.055 -2.044 4.485 -0.053 C3 NBL 3
NBL C4 C4 C 0 1 N N N N N N 74.722 -129.126 33.477 -0.608 2.448 -0.215 C4 NBL 4
NBL C5 C5 C 0 1 N N S N N N 73.675 -128.151 32.937 -0.572 0.930 -0.020 C5 NBL 5
NBL N6 N6 N 0 1 N N N N N N 72.484 -128.939 32.495 0.746 0.419 -0.405 N6 NBL 6
NBL C7 C7 C 0 1 N N N N N N 71.604 -128.493 31.526 1.744 0.380 0.500 C7 NBL 7
NBL O8 O8 O 0 1 N N N N N N 71.375 -127.292 31.378 1.528 0.681 1.657 O8 NBL 8
NBL O9 O9 O 0 1 N N N N N N 70.993 -129.378 30.759 2.981 0.009 0.121 O9 NBL 9
NBL C10 C10 C 0 1 N N N N N N 69.765 -128.906 30.237 4.057 -0.033 1.095 C10 NBL 10
NBL C11 C11 C 0 1 Y N N N N N 68.857 -130.086 29.987 5.329 -0.477 0.420 C11 NBL 11
NBL C12 C12 C 0 1 Y N N N N N 69.398 -131.309 29.586 6.180 0.460 -0.136 C12 NBL 12
NBL C13 C13 C 0 1 Y N N N N N 68.567 -132.393 29.361 7.347 0.052 -0.755 C13 NBL 13
NBL C14 C14 C 0 1 Y N N N N N 67.188 -132.266 29.535 7.663 -1.292 -0.818 C14 NBL 14
NBL C15 C15 C 0 1 Y N N N N N 66.648 -131.053 29.931 6.813 -2.229 -0.261 C15 NBL 15
NBL C16 C16 C 0 1 Y N N N N N 67.483 -129.959 30.159 5.648 -1.821 0.362 C16 NBL 16
NBL C17 C17 C 0 1 N N N N N N 74.302 -127.317 31.765 -1.631 0.289 -0.879 C17 NBL 17
NBL O18 O18 O 0 1 N N N N N N 74.835 -127.891 30.815 -1.331 -0.200 -1.948 O18 NBL 18
NBL N19 N19 N 0 1 N N N N N N 74.205 -125.948 31.799 -2.911 0.257 -0.459 N19 NBL 19
NBL C20 C20 C 0 1 N N R N N N 75.325 -125.029 31.440 -3.936 -0.391 -1.282 C20 NBL 20
NBL C21 C21 C 0 1 N N N N N N 75.019 -124.275 30.168 -5.331 0.176 -0.946 C21 NBL 21
NBL C22 C22 C 0 1 N N N N N N 76.371 -124.116 29.446 -6.140 -1.036 -0.434 C22 NBL 22
NBL N23 N23 N 0 1 N N N N N N 77.386 -124.771 30.302 -5.117 -1.990 0.052 N23 NBL 23
NBL C24 C24 C 0 1 N N N N N N 76.672 -125.701 31.217 -4.022 -1.895 -0.946 C24 NBL 24
NBL C25 C25 C 0 1 N N N N N N 78.367 -125.410 29.500 -5.168 -2.773 1.157 C25 NBL 25
NBL N26 N26 N 0 1 N N N N N N 78.903 -124.721 28.487 -5.211 -3.429 2.083 N26 NBL 26
NBL H11 1H1 H 0 1 N N N N N N 76.528 -127.220 35.735 -2.971 3.278 2.149 H11 NBL 27
NBL H12A 2H1 H 0 0 N N N N N N 74.763 -127.027 35.215 -2.108 1.727 2.009 H12A NBL 28
NBL H13A 3H1 H 0 0 N N N N N N 75.476 -128.489 36.097 -1.196 3.232 2.276 H13A NBL 29
NBL H2 H2 H 0 1 N N N N N N 76.168 -127.555 33.200 -2.762 2.461 -0.226 H2 NBL 30
NBL H31 1H3 H 0 1 N N N N N N 76.954 -130.070 34.850 -1.234 5.017 0.446 H31 NBL 31
NBL H32 2H3 H 0 1 N N N N N N 77.324 -129.764 33.063 -1.963 4.628 -1.130 H32 NBL 32
NBL H33 3H3 H 0 1 N N N N N N 78.006 -128.801 34.488 -3.001 4.874 0.294 H33 NBL 33
NBL H41 1H4 H 0 1 N N N N N N 74.312 -129.786 34.277 -0.483 2.681 -1.272 H41 NBL 34
NBL H42 2H4 H 0 1 N N N N N N 74.983 -129.918 32.737 0.200 2.906 0.356 H42 NBL 35
NBL H5 H5 H 0 1 N N N N N N 73.348 -127.430 33.722 -0.762 0.694 1.028 H5 NBL 36
NBL HN6 HN6 H 0 1 N N N N N N 72.254 -129.853 32.885 0.899 0.108 -1.311 HN6 NBL 37
NBL H101 1H10 H 0 0 N N N N N N 69.903 -128.275 29.328 4.200 0.960 1.522 H101 NBL 38
NBL H102 2H10 H 0 0 N N N N N N 69.292 -128.136 30.890 3.802 -0.736 1.888 H102 NBL 39
NBL H12 H12 H 0 1 N N N N N N 70.487 -131.419 29.446 5.933 1.510 -0.087 H12 NBL 40
NBL H13 H13 H 0 1 N N N N N N 69.003 -133.355 29.044 8.011 0.784 -1.190 H13 NBL 41
NBL H14 H14 H 0 1 N N N N N N 66.522 -133.128 29.359 8.575 -1.610 -1.303 H14 NBL 42
NBL H15 H15 H 0 1 N N N N N N 65.557 -130.959 30.064 7.060 -3.279 -0.311 H15 NBL 43
NBL H16 H16 H 0 1 N N N N N N 67.056 -128.992 30.476 4.984 -2.553 0.797 H16 NBL 44
NBL H19 H19 H 0 1 N N N N N N 73.289 -125.609 32.095 -3.155 0.663 0.387 H19 NBL 45
NBL H20 H20 H 0 1 N N N N N N 75.406 -124.364 32.332 -3.715 -0.251 -2.340 H20 NBL 46
NBL H211 1H21 H 0 0 N N N N N N 74.485 -123.311 30.337 -5.254 0.936 -0.168 H211 NBL 47
NBL H212 2H21 H 0 0 N N N N N N 74.231 -124.754 29.542 -5.796 0.592 -1.839 H212 NBL 48
NBL H221 1H22 H 0 0 N N N N N N 76.618 -123.057 29.201 -6.798 -0.736 0.382 H221 NBL 49
NBL H222 2H22 H 0 0 N N N N N N 76.361 -124.502 28.400 -6.717 -1.478 -1.246 H222 NBL 50
NBL H241 1H24 H 0 0 N N N N N N 76.606 -126.750 30.846 -4.269 -2.472 -1.837 H241 NBL 51
NBL H242 2H24 H 0 0 N N N N N N 77.227 -125.940 32.154 -3.084 -2.244 -0.515 H242 NBL 52
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NBL C1 C2 SING N N 1
NBL C1 H11 SING N N 2
NBL C1 H12A SING N N 3
NBL C1 H13A SING N N 4
NBL C2 C3 SING N N 5
NBL C2 C4 SING N N 6
NBL C2 H2 SING N N 7
NBL C3 H31 SING N N 8
NBL C3 H32 SING N N 9
NBL C3 H33 SING N N 10
NBL C4 C5 SING N N 11
NBL C4 H41 SING N N 12
NBL C4 H42 SING N N 13
NBL C5 N6 SING N N 14
NBL C5 C17 SING N N 15
NBL C5 H5 SING N N 16
NBL N6 C7 SING N N 17
NBL N6 HN6 SING N N 18
NBL C7 O8 DOUB N N 19
NBL C7 O9 SING N N 20
NBL O9 C10 SING N N 21
NBL C10 C11 SING N N 22
NBL C10 H101 SING N N 23
NBL C10 H102 SING N N 24
NBL C11 C12 DOUB Y N 25
NBL C11 C16 SING Y N 26
NBL C12 C13 SING Y N 27
NBL C12 H12 SING N N 28
NBL C13 C14 DOUB Y N 29
NBL C13 H13 SING N N 30
NBL C14 C15 SING Y N 31
NBL C14 H14 SING N N 32
NBL C15 C16 DOUB Y N 33
NBL C15 H15 SING N N 34
NBL C16 H16 SING N N 35
NBL C17 O18 DOUB N N 36
NBL C17 N19 SING N N 37
NBL N19 C20 SING N N 38
NBL N19 H19 SING N N 39
NBL C20 C21 SING N N 40
NBL C20 C24 SING N N 41
NBL C20 H20 SING N N 42
NBL C21 C22 SING N N 43
NBL C21 H211 SING N N 44
NBL C21 H212 SING N N 45
NBL C22 N23 SING N N 46
NBL C22 H221 SING N N 47
NBL C22 H222 SING N N 48
NBL N23 C24 SING N N 49
NBL N23 C25 SING N N 50
NBL C24 H241 SING N N 51
NBL C24 H242 SING N N 52
NBL C25 N26 TRIP N N 53
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NBL SMILES ACDLabs 10.04 "N#CN2CCC(NC(=O)C(NC(=O)OCc1ccccc1)CC(C)C)C2"
NBL SMILES_CANONICAL CACTVS 3.341 "CC(C)C[C@H](NC(=O)OCc1ccccc1)C(=O)N[C@@H]2CCN(C2)C#N"
NBL SMILES CACTVS 3.341 "CC(C)C[CH](NC(=O)OCc1ccccc1)C(=O)N[CH]2CCN(C2)C#N"
NBL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(C)C[C@@H](C(=O)N[C@@H]1CCN(C1)C#N)NC(=O)OCc2ccccc2"
NBL SMILES "OpenEye OEToolkits" 1.5.0 "CC(C)CC(C(=O)NC1CCN(C1)C#N)NC(=O)OCc2ccccc2"
NBL InChI InChI 1.03 InChI=1S/C19H26N4O3/c1-14(2)10-17(18(24)21-16-8-9-23(11-16)13-20)22-19(25)26-12-15-6-4-3-5-7-15/h3-7,14,16-17H,8-12H2,1-2H3,(H,21,24)(H,22,25)/t16-,17+/m1/s1
NBL InChIKey InChI 1.03 IMTUSTXBVIALBC-SJORKVTESA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NBL "SYSTEMATIC NAME" ACDLabs 10.04 N~2~-[(benzyloxy)carbonyl]-N-[(3R)-1-cyanopyrrolidin-3-yl]-L-leucinamide
NBL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "phenylmethyl N-[(2S)-1-[[(3R)-1-cyanopyrrolidin-3-yl]amino]-4-methyl-1-oxo-pentan-2-yl]carbamate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NBL 'Create component' 2005-01-31 RCSB
NBL 'Modify descriptor' 2011-06-04 RCSB
#
_pdbe_chem_comp_drugbank_details.comp_id NBL
_pdbe_chem_comp_drugbank_details.drugbank_id DB03456
_pdbe_chem_comp_drugbank_details.type 'small molecule'
_pdbe_chem_comp_drugbank_details.name 'N2-[(benzyloxy)carbonyl]-n1-[(3S)-1-cyanopyrrolidin-3-yl]-l-leucinamide'
_pdbe_chem_comp_drugbank_details.description
'N2-[(benzyloxy)carbonyl]-n1-[(3S)-1-cyanopyrrolidin-3-yl]-l-leucinamide is a solid. This compound belongs to the n-acyl-alpha amino acids and derivatives. These are compounds containing an alpha amino acid (or a derivative thereof) which bears an acyl group at its terminal nitrogen atom. It is known to target cathepsin K.'
_pdbe_chem_comp_drugbank_details.cas_number ?
_pdbe_chem_comp_drugbank_details.mechanism_of_action ?
#
_pdbe_chem_comp_drugbank_classification.comp_id NBL
_pdbe_chem_comp_drugbank_classification.drugbank_id DB03456
_pdbe_chem_comp_drugbank_classification.parent 'Leucine and derivatives'
_pdbe_chem_comp_drugbank_classification.kingdom 'Organic compounds'
_pdbe_chem_comp_drugbank_classification.class 'Carboxylic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.superclass 'Organic acids and derivatives'
_pdbe_chem_comp_drugbank_classification.description
'This compound belongs to the class of organic compounds known as leucine and derivatives. These are compounds containing leucine or a derivative thereof resulting from reaction of leucine at the amino group or the carboxy group, or from the replacement of any hydrogen of glycine by a heteroatom.'
#
_pdbe_chem_comp_drugbank_targets.comp_id NBL
_pdbe_chem_comp_drugbank_targets.drugbank_id DB03456
_pdbe_chem_comp_drugbank_targets.name 'Cathepsin K'
_pdbe_chem_comp_drugbank_targets.organism Humans
_pdbe_chem_comp_drugbank_targets.uniprot_id P43235
_pdbe_chem_comp_drugbank_targets.pharmacologically_active unknown
_pdbe_chem_comp_drugbank_targets.ordinal 1
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
NBL C1 C 4.299 6.000 1
NBL C2 C 5.598 5.250 2
NBL C3 C 6.897 6.000 3
NBL C4 C 5.598 3.750 4
NBL C5 C 6.897 3.000 5
NBL N6 N 6.897 1.500 6
NBL C7 C 5.598 0.750 7
NBL O8 O 4.299 1.500 8
NBL O9 O 5.598 -0.750 9
NBL C10 C 4.299 -1.500 10
NBL C11 C 4.299 -3.000 11
NBL C12 C 3.000 -3.750 12
NBL C13 C 3.000 -5.250 13
NBL C14 C 4.299 -6.000 14
NBL C15 C 5.598 -5.250 15
NBL C16 C 5.598 -3.750 16
NBL C17 C 8.196 3.750 17
NBL O18 O 8.196 5.250 18
NBL N19 N 9.495 3.000 19
NBL C20 C 10.794 3.750 20
NBL C21 C 10.951 5.242 21
NBL C22 C 12.418 5.554 22
NBL N23 N 13.168 4.255 23
NBL C24 C 12.165 3.140 24
NBL C25 C 14.660 4.098 25
NBL N26 N 16.152 3.941 26
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
NBL C1 C2 SINGLE NONE 1
NBL C2 C3 SINGLE NONE 2
NBL C2 C4 SINGLE NONE 3
NBL C5 C4 SINGLE BEGINWEDGE 4
NBL C5 N6 SINGLE NONE 5
NBL C5 C17 SINGLE NONE 6
NBL N6 C7 SINGLE NONE 7
NBL C7 O8 DOUBLE NONE 8
NBL C7 O9 SINGLE NONE 9
NBL O9 C10 SINGLE NONE 10
NBL C10 C11 SINGLE NONE 11
NBL C11 C12 DOUBLE NONE 12
NBL C11 C16 SINGLE NONE 13
NBL C12 C13 SINGLE NONE 14
NBL C13 C14 DOUBLE NONE 15
NBL C14 C15 SINGLE NONE 16
NBL C15 C16 DOUBLE NONE 17
NBL C17 O18 DOUBLE NONE 18
NBL C17 N19 SINGLE NONE 19
NBL C20 N19 SINGLE BEGINDASH 20
NBL C20 C21 SINGLE NONE 21
NBL C20 C24 SINGLE NONE 22
NBL C21 C22 SINGLE NONE 23
NBL C22 N23 SINGLE NONE 24
NBL N23 C24 SINGLE NONE 25
NBL N23 C25 SINGLE NONE 26
NBL C25 N26 TRIPLE NONE 27
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
NBL MurckoScaffold S1 scaffold 'O=C(CNC(=O)OCc1ccccc1)N[C@@H]1CCNC1' InChI=1S/C14H19N3O3/c18-13(17-12-6-7-15-8-12)9-16-14(19)20-10-11-4-2-1-3-5-11/h1-5,12,15H,6-10H2,(H,16,19)(H,17,18)/t12-/m1/s1 CVAUWRLQFJOMBC-GFCCVEGCSA-N
NBL amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
NBL peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
NBL phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
NBL Z1650040241 F4 fragment CCC(=O)NC1CCNC1 InChI=1S/C7H14N2O/c1-2-7(10)9-6-3-4-8-5-6/h6,8H,2-5H2,1H3,(H,9,10) JTOGNXBWLDRNON-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
NBL C5 S1 1
NBL N6 S1 1
NBL C7 S1 1
NBL O8 S1 1
NBL O9 S1 1
NBL C10 S1 1
NBL C11 S1 1
NBL C12 S1 1
NBL C13 S1 1
NBL C14 S1 1
NBL C15 S1 1
NBL C16 S1 1
NBL C17 S1 1
NBL O18 S1 1
NBL N19 S1 1
NBL C20 S1 1
NBL C21 S1 1
NBL C22 S1 1
NBL N23 S1 1
NBL C24 S1 1
NBL N19 F1 1
NBL C17 F1 1
NBL O18 F1 1
NBL C5 F1 1
NBL O18 F2 1
NBL C17 F2 1
NBL C5 F2 1
NBL N6 F2 1
NBL C11 F3 1
NBL C12 F3 1
NBL C13 F3 1
NBL C14 F3 1
NBL C15 F3 1
NBL C16 F3 1
NBL C4 F4 1
NBL C5 F4 1
NBL C17 F4 1
NBL O18 F4 1
NBL N19 F4 1
NBL C20 F4 1
NBL C21 F4 1
NBL C22 F4 1
NBL N23 F4 1
NBL C24 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id NBL
_pdbe_chem_comp_rdkit_properties.exactmw 358.200
_pdbe_chem_comp_rdkit_properties.amw 358.442
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 26
_pdbe_chem_comp_rdkit_properties.NumAtoms 52
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.526
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 190.504
_pdbe_chem_comp_rdkit_properties.tpsa 94.460
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.944
_pdbe_chem_comp_rdkit_properties.CrippenMR 96.473
_pdbe_chem_comp_rdkit_properties.chi0v 12.514
_pdbe_chem_comp_rdkit_properties.chi1v 6.355
_pdbe_chem_comp_rdkit_properties.chi2v 2.207
_pdbe_chem_comp_rdkit_properties.chi3v 2.207
_pdbe_chem_comp_rdkit_properties.chi4v 1.286
_pdbe_chem_comp_rdkit_properties.chi0n 38.514
_pdbe_chem_comp_rdkit_properties.chi1n 19.250
_pdbe_chem_comp_rdkit_properties.chi2n 2.207
_pdbe_chem_comp_rdkit_properties.chi3n 2.207
_pdbe_chem_comp_rdkit_properties.chi4n 1.286
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.750
_pdbe_chem_comp_rdkit_properties.kappa1 4.558
_pdbe_chem_comp_rdkit_properties.kappa2 9.660
_pdbe_chem_comp_rdkit_properties.kappa3 6.280
_pdbe_chem_comp_rdkit_properties.Phi 1.694
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
NBL UniChem DrugBank DB03456
NBL UniChem PDBe NBL
NBL UniChem ZINC ZINC000012503669
NBL UniChem 'PubChem TPHARMA' 15027210
NBL UniChem PubChem 5288988
NBL UniChem 'Probes And Drugs' PD007516
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
NBL C1 -2.506 -4.940 -1.156 ETKDGv3 1
NBL C2 -1.668 -3.733 -1.599 ETKDGv3 2
NBL C3 -0.175 -4.041 -1.410 ETKDGv3 3
NBL C4 -2.115 -2.468 -0.825 ETKDGv3 4
NBL C5 -1.474 -1.160 -1.348 ETKDGv3 5
NBL N6 -0.117 -0.982 -0.819 ETKDGv3 6
NBL C7 0.803 -0.040 -1.381 ETKDGv3 7
NBL O8 0.488 0.626 -2.406 ETKDGv3 8
NBL O9 2.051 0.137 -0.778 ETKDGv3 9
NBL C10 3.015 1.064 -1.265 ETKDGv3 10
NBL C11 4.231 1.018 -0.389 ETKDGv3 11
NBL C12 4.290 1.748 0.740 ETKDGv3 12
NBL C13 5.476 1.665 1.619 ETKDGv3 13
NBL C14 6.488 0.848 1.304 ETKDGv3 14
NBL C15 6.421 0.027 0.078 ETKDGv3 15
NBL C16 5.351 0.103 -0.724 ETKDGv3 16
NBL C17 -2.316 0.023 -0.948 ETKDGv3 17
NBL O18 -2.980 0.635 -1.828 ETKDGv3 18
NBL N19 -2.374 0.442 0.424 ETKDGv3 19
NBL C20 -3.081 1.661 0.831 ETKDGv3 20
NBL C21 -2.373 2.920 0.313 ETKDGv3 21
NBL C22 -2.558 3.974 1.398 ETKDGv3 22
NBL N23 -2.933 3.235 2.586 ETKDGv3 23
NBL C24 -3.138 1.821 2.353 ETKDGv3 24
NBL C25 -3.059 3.830 3.850 ETKDGv3 25
NBL N26 -3.162 4.320 4.893 ETKDGv3 26
NBL H11 -3.585 -4.747 -1.335 ETKDGv3 27
NBL H12A -2.352 -5.147 -0.074 ETKDGv3 28
NBL H13A -2.221 -5.842 -1.738 ETKDGv3 29
NBL H2 -1.857 -3.576 -2.684 ETKDGv3 30
NBL H31 0.447 -3.266 -1.902 ETKDGv3 31
NBL H32 0.081 -5.013 -1.883 ETKDGv3 32
NBL H33 0.082 -4.092 -0.330 ETKDGv3 33
NBL H41 -1.913 -2.591 0.262 ETKDGv3 34
NBL H42 -3.220 -2.382 -0.937 ETKDGv3 35
NBL H5 -1.429 -1.209 -2.459 ETKDGv3 36
NBL HN6 0.180 -1.498 0.039 ETKDGv3 37
NBL H101 3.290 0.803 -2.310 ETKDGv3 38
NBL H102 2.583 2.089 -1.270 ETKDGv3 39
NBL H12 3.473 2.402 1.019 ETKDGv3 40
NBL H13 5.521 2.264 2.519 ETKDGv3 41
NBL H14 7.356 0.784 1.947 ETKDGv3 42
NBL H15 7.238 -0.640 -0.169 ETKDGv3 43
NBL H16 5.306 -0.506 -1.618 ETKDGv3 44
NBL H19 -1.902 -0.152 1.142 ETKDGv3 45
NBL H20 -4.123 1.637 0.437 ETKDGv3 46
NBL H211 -2.805 3.258 -0.654 ETKDGv3 47
NBL H212 -1.286 2.722 0.177 ETKDGv3 48
NBL H221 -1.612 4.532 1.570 ETKDGv3 49
NBL H222 -3.372 4.681 1.126 ETKDGv3 50
NBL H241 -4.131 1.505 2.740 ETKDGv3 51
NBL H242 -2.337 1.250 2.870 ETKDGv3 52
#