data_NCG
#
_chem_comp.id NCG
_chem_comp.name
"[(R)-4-((1,3-DIOXOLANE-2-OXY)-4-(S)-YL)-4-HYDROXY]-(R)-10-(2-METHYLAMINO-5-METHYL-2,6-DIDEOXYGALACTOPYRANOSYL-OXY)-(R)-11-(2-HYDROXY-5-METHYL-7-METHOXY-1-NAPHTHOYL-OXY)-(R)-12-S-GLUTATHIONYL-4,10,11,12-TETRAHYDROINDACENE"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAD
_chem_comp.formula "C45 H52 N4 O18 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "NCSI-GLU; NEOCARZINOSTATIN-GLUTATHIONE CHROMOPHORE"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2002-09-26
_chem_comp.pdbx_modified_date 2020-05-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 968.975
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code NCG
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2"
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code ?
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NCG C1 C1 C 0 1 Y N N N N N -3.481 0.448 4.473 1.095 -3.658 -0.907 C1 NCG 1
NCG C2 C2 C 0 1 Y N N N N N -3.320 -0.595 3.615 1.951 -4.750 -0.968 C2 NCG 2
NCG C3 C3 C 0 1 Y N N N N N -3.303 -1.875 4.076 2.438 -5.088 -2.220 C3 NCG 3
NCG C4 C4 C 0 1 Y N N N N N -3.441 -2.127 5.457 2.087 -4.357 -3.376 C4 NCG 4
NCG C5 C5 C 0 1 Y N N N N N -3.592 -1.080 6.312 1.236 -3.264 -3.314 C5 NCG 5
NCG C6 C6 C 0 1 Y N N N N N -3.623 0.200 5.853 0.747 -2.923 -2.059 C6 NCG 6
NCG C7 C7 C 0 1 N N N N N N -3.155 -3.143 3.393 3.337 -6.168 -2.594 C7 NCG 7
NCG C8 C8 C 0 1 N N N N N N -3.209 -4.166 4.348 3.528 -6.109 -3.921 C8 NCG 8
NCG C9 C9 C 0 1 N N R N N N -3.390 -3.572 5.724 2.774 -4.964 -4.571 C9 NCG 9
NCG C10 C10 C 0 1 N N S N N N -3.767 1.486 6.552 -0.171 -1.783 -1.719 C10 NCG 10
NCG C11 C11 C 0 1 N N S N N N -3.111 2.484 5.597 -0.632 -2.167 -0.291 C11 NCG 11
NCG C12 C12 C 0 1 N N R N N N -3.525 1.900 4.246 0.449 -3.082 0.317 C12 NCG 12
NCG C13 C13 C 0 1 N N R N N N -4.694 -4.051 6.364 3.706 -3.988 -5.280 C13 NCG 13
NCG O14 O14 O 0 1 N N N N N N -5.797 -3.418 5.763 2.980 -2.843 -5.722 O14 NCG 14
NCG C15 C15 C 0 1 N N N N N N -6.375 -2.672 6.734 3.547 -2.428 -6.895 C15 NCG 15
NCG O16 O16 O 0 1 N N N N N N -5.805 -2.728 7.961 4.437 -3.358 -7.355 O16 NCG 16
NCG C17 C17 C 0 1 N N N N N N -4.749 -3.650 7.839 4.283 -4.523 -6.557 C17 NCG 17
NCG O19 O19 O 0 1 N N N N N N -7.358 -1.974 6.518 3.292 -1.372 -7.455 O19 NCG 18
NCG O26 O26 O 0 1 N N N N N N -1.711 2.465 5.737 -1.847 -2.919 -0.388 O26 NCG 19
NCG C27 C27 C 0 1 N N N N N N -1.294 3.247 6.761 -2.902 -2.263 -0.934 C27 NCG 20
NCG O28 O28 O 0 1 N N N N N N -2.122 3.523 7.622 -2.907 -1.112 -1.341 O28 NCG 21
NCG O29 O29 O 0 1 N N N N N N -2.283 -3.883 6.531 1.810 -5.446 -5.498 O29 NCG 22
NCG C68 C68 C 0 1 Y N N N N N 0.084 3.723 6.844 -4.094 -3.147 -0.976 C68 NCG 23
NCG C69 C69 C 0 1 Y N N N N N 1.678 2.504 3.754 -3.778 -4.796 -4.295 C69 NCG 24
NCG C70 C70 C 0 1 Y N N N N N 0.705 2.734 4.710 -3.496 -3.974 -3.202 C70 NCG 25
NCG C71 C71 C 0 1 Y N N N N N 1.047 3.466 5.857 -4.345 -3.954 -2.084 C71 NCG 26
NCG C72 C72 C 0 1 Y N N N N N 2.374 3.949 6.009 -5.495 -4.778 -2.072 C72 NCG 27
NCG C73 C73 C 0 1 Y N N N N N 3.346 3.702 5.028 -5.763 -5.599 -3.180 C73 NCG 28
NCG C74 C74 C 0 1 Y N N N N N 2.967 2.979 3.912 -4.909 -5.606 -4.284 C74 NCG 29
NCG C75 C75 C 0 1 Y N N N N N 0.470 4.478 7.937 -4.931 -3.126 0.128 C75 NCG 30
NCG C76 C76 C 0 1 Y N N N N N 1.761 4.949 8.086 -6.062 -3.937 0.138 C76 NCG 31
NCG C77 C77 C 0 1 Y N N N N N 2.740 4.688 7.145 -6.344 -4.758 -0.954 C77 NCG 32
NCG O82 O82 O 0 1 N N N N N N -0.453 4.780 8.917 -4.680 -2.334 1.208 O82 NCG 33
NCG C83 C83 C 0 1 N N N N N N 4.763 4.205 5.168 -6.961 -6.495 -3.234 C83 NCG 34
NCG O87 O87 O 0 1 N N N N N N 1.391 1.793 2.607 -2.944 -4.806 -5.371 O87 NCG 35
NCG C88 C88 C 0 1 N N N N N N 0.137 1.160 2.694 -3.292 -5.668 -6.453 C88 NCG 36
NCG C94 C94 C 0 1 N N R N N N -6.399 3.063 2.281 2.120 -1.441 3.227 C94 NCG 37
NCG C95 C95 C 0 1 N N R N N N -5.172 2.206 2.594 1.112 -2.271 2.424 C95 NCG 38
NCG O96 O96 O 0 1 N N N N N N -5.447 0.846 2.360 0.975 -3.583 2.983 O96 NCG 39
NCG C97 C97 C 0 1 N N R N N N -6.476 0.335 3.173 2.206 -4.318 3.034 C97 NCG 40
NCG C98 C98 C 0 1 N N R N N N -7.604 2.566 3.080 3.464 -2.160 3.362 C98 NCG 41
NCG C99 C99 C 0 1 N N R N N N -7.784 1.063 2.861 3.240 -3.580 3.894 C99 NCG 42
NCG OXS O100 O 0 1 N N N N N N -8.158 0.812 1.530 2.760 -3.518 5.240 OXS NCG 43
NCG CXU C102 C 0 1 N N N N N N -6.642 -1.159 2.895 1.881 -5.704 3.581 CXU NCG 44
NCG OXX O105 O 0 1 N N N N N N -4.840 2.310 3.958 1.412 -2.325 1.031 OXX NCG 45
NCG NX0 N108 N 0 1 N N N N N N -6.132 4.458 2.572 2.313 -0.123 2.564 NX0 NCG 46
NCG CX2 C110 C 0 1 N N N N N N -5.803 5.007 3.874 3.176 0.820 3.323 CX2 NCG 47
NCG OXA O118 O 0 1 N N N N N N -8.762 3.242 2.663 4.322 -1.471 4.267 OXA NCG 48
NCG N N N 0 1 N N N N N N -7.258 2.437 9.095 0.052 2.859 -2.566 N NCG 49
NCG CA CA C 0 1 N N R N N N -7.355 1.097 8.527 -0.345 2.366 -1.271 CA NCG 50
NCG CB CB C 0 1 N N N N N N -6.040 0.663 7.879 -0.691 0.876 -1.295 CB NCG 51
NCG SG SG S 0 1 N N N N N N -5.510 1.913 6.697 0.702 -0.188 -1.736 SG NCG 52
NCG C C C 0 1 N N N N N N -7.721 0.058 9.588 0.739 2.720 -0.255 C NCG 53
NCG O5 O5 O 0 1 N N N N N N -7.566 0.323 10.774 1.938 2.716 -0.525 O5 NCG 54
NCG N1 N1 N 0 1 N N N N N N -8.252 -1.232 9.193 0.210 3.016 0.994 N1 NCG 55
NCG C21 C21 C 0 1 N N N N N N -7.783 -2.291 10.079 1.037 3.357 2.128 C21 NCG 56
NCG C22 C22 C 0 1 N N N N N N -8.724 -2.532 11.261 1.235 4.842 2.148 C22 NCG 57
NCG O2 O2 O 0 1 N N N N N N -8.274 -2.639 12.395 0.767 5.647 1.357 O2 NCG 58
NCG O3 O3 O 0 1 N N N N N N -10.085 -2.643 11.056 2.028 5.190 3.194 O3 NCG 59
NCG C20 C20 C 0 1 N N N N N N -7.273 3.432 8.041 -0.858 3.346 -3.497 C20 NCG 60
NCG O34 O34 O 0 1 N N N N N N -7.971 3.256 7.050 -2.072 3.411 -3.326 O34 NCG 61
NCG C18 C18 C 0 1 N N N N N N -6.434 4.706 8.158 -0.166 3.826 -4.762 C18 NCG 62
NCG C14 C14 C 0 1 N N N N N N -4.980 4.371 8.492 -1.129 4.373 -5.817 C14 NCG 63
NCG C16 C16 C 0 1 N N R N N N -4.151 5.655 8.553 -0.431 4.820 -7.104 C16 NCG 64
NCG C19 C19 C 0 1 N N N N N N -3.777 6.132 7.148 -1.451 5.324 -8.106 C19 NCG 65
NCG O1 O1 O 0 1 N N N N N N -4.223 5.567 6.157 -1.683 4.814 -9.195 O1 NCG 66
NCG O4 O4 O 0 1 N N N N N N -2.933 7.213 6.990 -2.062 6.460 -7.680 O4 NCG 67
NCG N2 N2 N 0 1 N N N N N N -2.955 5.434 9.342 0.278 3.744 -7.747 N2 NCG 68
NCG H8 H8 H 0 1 N N N N N N -3.214 -0.406 2.557 2.221 -5.308 -0.079 H8 NCG 69
NCG H2 H2 H 0 1 N N N N N N -3.696 -1.277 7.369 0.968 -2.703 -4.201 H2 NCG 70
NCG H6 H6 H 0 1 N N N N N N -3.027 -3.287 2.331 3.758 -6.886 -1.909 H6 NCG 71
NCG H5 H5 H 0 1 N N N N N N -3.130 -5.227 4.161 4.148 -6.802 -4.473 H5 NCG 72
NCG H12 H12 H 0 1 N N N N N N -3.285 1.469 7.529 -1.017 -1.748 -2.414 H12 NCG 73
NCG H11 H11 H 0 1 N N N N N N -3.515 3.487 5.732 -0.853 -1.299 0.339 H11 NCG 74
NCG H10 H10 H 0 1 N N N N N N -2.843 2.197 3.449 0.030 -3.861 0.962 H10 NCG 75
NCG H13 H13 H 0 1 N N N N N N -4.788 -5.132 6.270 4.489 -3.643 -4.596 H13 NCG 76
NCG H14A H14A H 0 0 N N N N N N -4.949 -4.553 8.416 5.248 -5.015 -6.405 H14A NCG 77
NCG H14B H14B H 0 0 N N N N N N -3.817 -3.198 8.179 3.612 -5.212 -7.082 H14B NCG 78
NCG H66 H66 H 0 1 N N N N N N -2.202 -4.827 6.531 2.113 -6.321 -5.786 H66 NCG 79
NCG H8B "H8''" H 0 1 N N N N N N -0.296 2.355 4.564 -2.603 -3.354 -3.245 H8B NCG 80
NCG H6B "H6''" H 0 1 N N N N N N 3.220 3.585 3.011 -5.123 -6.245 -5.137 H6B NCG 81
NCG H3B "H3''" H 0 1 N N N N N N 2.010 5.535 8.959 -6.732 -3.936 0.994 H3B NCG 82
NCG H4B "H4''" H 0 1 N N N N N N 3.605 4.191 7.643 -7.236 -5.377 -0.907 H4B NCG 83
NCG H92 H92 H 0 1 N N N N N N -0.002 5.134 9.673 -4.893 -2.808 2.027 H92 NCG 84
NCG HNM1 HNM1 H 0 0 N N N N N N 5.178 4.384 4.187 -6.665 -7.501 -3.548 HNM1 NCG 85
NCG HNM2 HNM2 H 0 0 N N N N N N 5.359 3.464 5.681 -7.447 -6.560 -2.254 HNM2 NCG 86
NCG HNM3 HNM3 H 0 0 N N N N N N 4.769 5.127 5.732 -7.707 -6.111 -3.938 HNM3 NCG 87
NCG H7M1 H7M1 H 0 0 N N N N N N -0.022 0.517 1.829 -4.166 -6.264 -6.179 H7M1 NCG 88
NCG H7M2 H7M2 H 0 0 N N N N N N -0.662 1.901 2.722 -2.448 -6.324 -6.682 H7M2 NCG 89
NCG H7M3 H7M3 H 0 0 N N N N N N 0.078 0.548 3.595 -3.527 -5.061 -7.330 H7M3 NCG 90
NCG "H2'" "H2'" H 0 1 N N N N N N -6.632 3.004 1.218 1.721 -1.214 4.222 "H2'" NCG 91
NCG "H1'" "H1'" H 0 1 N N N N N N -4.343 2.545 1.972 0.126 -1.799 2.501 "H1'" NCG 92
NCG "H5'" "H5'" H 0 1 N N N N N N -6.222 0.481 4.223 2.585 -4.440 2.012 "H5'" NCG 93
NCG "H3'" "H3'" H 0 1 N N N N N N -7.439 2.772 4.138 3.972 -2.207 2.391 "H3'" NCG 94
NCG "H4'" "H4'" H 0 1 N N N N N N -8.576 0.702 3.516 4.189 -4.127 3.923 "H4'" NCG 95
NCG H104 H104 H 0 0 N N N N N N -7.355 0.706 1.037 3.054 -4.335 5.670 H104 NCG 96
NCG HFM1 HFM1 H 0 0 N N N N N N -5.737 -1.699 3.174 1.116 -6.190 2.968 HFM1 NCG 97
NCG HFM2 HFM2 H 0 0 N N N N N N -6.835 -1.328 1.835 2.774 -6.336 3.583 HFM2 NCG 98
NCG HFM3 HFM3 H 0 0 N N N N N N -7.477 -1.562 3.468 1.507 -5.634 4.607 HFM3 NCG 99
NCG H108 H108 H 0 0 N N N N N N -5.246 4.556 2.119 2.716 -0.273 1.630 H108 NCG 100
NCG H2M1 H2M1 H 0 0 N N N N N N -4.746 4.826 4.069 2.778 1.819 3.139 H2M1 NCG 101
NCG H2M2 H2M2 H 0 0 N N N N N N -6.414 4.513 4.629 3.101 0.531 4.372 H2M2 NCG 102
NCG H2M3 H2M3 H 0 0 N N N N N N -6.007 6.078 3.865 4.186 0.698 2.930 H2M3 NCG 103
NCG H120 H120 H 0 0 N N N N N N -9.133 2.728 1.958 4.208 -1.894 5.133 H120 NCG 104
NCG H9 H9 H 0 1 N N N N N N -6.409 2.517 9.617 1.039 2.849 -2.809 H9 NCG 105
NCG HA HA H 0 1 N N N N N N -8.141 1.117 7.771 -1.247 2.932 -1.004 HA NCG 106
NCG HB1 HB1 H 0 1 N N N N N N -5.299 0.509 8.664 -1.055 0.549 -0.316 HB1 NCG 107
NCG HB2 HB2 H 0 1 N N N N N N -6.168 -0.284 7.355 -1.488 0.689 -2.023 HB2 NCG 108
NCG H3 H3 H 0 1 N N N N N N -7.972 -1.435 8.255 -0.797 3.037 1.118 H3 NCG 109
NCG H1 H1 H 0 1 N N N N N N -6.789 -2.038 10.449 2.004 2.859 2.026 H1 NCG 110
NCG H7 H7 H 0 1 N N N N N N -7.698 -3.208 9.496 0.535 3.037 3.045 H7 NCG 111
NCG H4 H4 H 0 1 N N N N N N -10.470 -2.808 11.906 2.176 6.159 3.234 H4 NCG 112
NCG H14 H14 H 0 1 N N N N N N -6.855 5.343 8.936 0.441 3.013 -5.175 H14 NCG 113
NCG H15 H15 H 0 1 N N N N N N -6.479 5.249 7.214 0.522 4.628 -4.464 H15 NCG 114
NCG H16 H16 H 0 1 N N N N N N -4.570 3.704 7.734 -1.671 5.223 -5.383 H16 NCG 115
NCG H17 H17 H 0 1 N N N N N N -4.930 3.860 9.454 -1.888 3.614 -6.050 H17 NCG 116
NCG H18 H18 H 0 1 N N N N N N -4.716 6.437 9.059 0.311 5.604 -6.921 H18 NCG 117
NCG H21 H21 H 0 1 N N N N N N -2.273 6.955 6.360 -2.707 6.849 -8.308 H21 NCG 118
NCG H19 H19 H 0 1 N N N N N N -2.348 6.225 9.256 1.282 3.710 -7.678 H19 NCG 119
NCG H20 H20 H 0 1 N N N N N N -2.478 4.621 9.007 -0.207 3.168 -8.414 H20 NCG 120
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NCG C1 C2 DOUB Y N 1
NCG C1 C6 SING Y N 2
NCG C1 C12 SING N N 3
NCG C2 C3 SING Y N 4
NCG C2 H8 SING N N 5
NCG C3 C4 DOUB Y N 6
NCG C3 C7 SING N N 7
NCG C4 C5 SING Y N 8
NCG C4 C9 SING N N 9
NCG C5 C6 DOUB Y N 10
NCG C5 H2 SING N N 11
NCG C6 C10 SING N N 12
NCG C7 C8 DOUB N N 13
NCG C7 H6 SING N N 14
NCG C8 C9 SING N N 15
NCG C8 H5 SING N N 16
NCG C9 C13 SING N N 17
NCG C9 O29 SING N N 18
NCG C10 C11 SING N N 19
NCG C10 SG SING N N 20
NCG C10 H12 SING N N 21
NCG C11 C12 SING N N 22
NCG C11 O26 SING N N 23
NCG C11 H11 SING N N 24
NCG C12 OXX SING N N 25
NCG C12 H10 SING N N 26
NCG C13 O14 SING N N 27
NCG C13 C17 SING N N 28
NCG C13 H13 SING N N 29
NCG O14 C15 SING N N 30
NCG C15 O16 SING N N 31
NCG C15 O19 DOUB N N 32
NCG O16 C17 SING N N 33
NCG C17 H14A SING N N 34
NCG C17 H14B SING N N 35
NCG O26 C27 SING N N 36
NCG C27 O28 DOUB N N 37
NCG C27 C68 SING N N 38
NCG O29 H66 SING N N 39
NCG C68 C71 SING Y N 40
NCG C68 C75 DOUB Y N 41
NCG C69 C70 DOUB Y N 42
NCG C69 C74 SING Y N 43
NCG C69 O87 SING N N 44
NCG C70 C71 SING Y N 45
NCG C70 H8B SING N N 46
NCG C71 C72 DOUB Y N 47
NCG C72 C73 SING Y N 48
NCG C72 C77 SING Y N 49
NCG C73 C74 DOUB Y N 50
NCG C73 C83 SING N N 51
NCG C74 H6B SING N N 52
NCG C75 C76 SING Y N 53
NCG C75 O82 SING N N 54
NCG C76 C77 DOUB Y N 55
NCG C76 H3B SING N N 56
NCG C77 H4B SING N N 57
NCG O82 H92 SING N N 58
NCG C83 HNM1 SING N N 59
NCG C83 HNM2 SING N N 60
NCG C83 HNM3 SING N N 61
NCG O87 C88 SING N N 62
NCG C88 H7M1 SING N N 63
NCG C88 H7M2 SING N N 64
NCG C88 H7M3 SING N N 65
NCG C94 C95 SING N N 66
NCG C94 C98 SING N N 67
NCG C94 NX0 SING N N 68
NCG C94 "H2'" SING N N 69
NCG C95 O96 SING N N 70
NCG C95 OXX SING N N 71
NCG C95 "H1'" SING N N 72
NCG O96 C97 SING N N 73
NCG C97 C99 SING N N 74
NCG C97 CXU SING N N 75
NCG C97 "H5'" SING N N 76
NCG C98 C99 SING N N 77
NCG C98 OXA SING N N 78
NCG C98 "H3'" SING N N 79
NCG C99 OXS SING N N 80
NCG C99 "H4'" SING N N 81
NCG OXS H104 SING N N 82
NCG CXU HFM1 SING N N 83
NCG CXU HFM2 SING N N 84
NCG CXU HFM3 SING N N 85
NCG NX0 CX2 SING N N 86
NCG NX0 H108 SING N N 87
NCG CX2 H2M1 SING N N 88
NCG CX2 H2M2 SING N N 89
NCG CX2 H2M3 SING N N 90
NCG OXA H120 SING N N 91
NCG N CA SING N N 92
NCG N C20 SING N N 93
NCG N H9 SING N N 94
NCG CA CB SING N N 95
NCG CA C SING N N 96
NCG CA HA SING N N 97
NCG CB SG SING N N 98
NCG CB HB1 SING N N 99
NCG CB HB2 SING N N 100
NCG C O5 DOUB N N 101
NCG C N1 SING N N 102
NCG N1 C21 SING N N 103
NCG N1 H3 SING N N 104
NCG C21 C22 SING N N 105
NCG C21 H1 SING N N 106
NCG C21 H7 SING N N 107
NCG C22 O2 DOUB N N 108
NCG C22 O3 SING N N 109
NCG O3 H4 SING N N 110
NCG C20 O34 DOUB N N 111
NCG C20 C18 SING N N 112
NCG C18 C14 SING N N 113
NCG C18 H14 SING N N 114
NCG C18 H15 SING N N 115
NCG C14 C16 SING N N 116
NCG C14 H16 SING N N 117
NCG C14 H17 SING N N 118
NCG C16 C19 SING N N 119
NCG C16 N2 SING N N 120
NCG C16 H18 SING N N 121
NCG C19 O1 DOUB N N 122
NCG C19 O4 SING N N 123
NCG O4 H21 SING N N 124
NCG N2 H19 SING N N 125
NCG N2 H20 SING N N 126
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NCG SMILES ACDLabs 10.04 O=C(O)C(N)CCC(=O)NC(C(=O)NCC(=O)O)CSC7c3cc1c(C=CC1(O)C2OC(=O)OC2)cc3C(OC4OC(C(O)C(O)C4NC)C)C7OC(=O)c6c5cc(OC)cc(c5ccc6O)C
NCG SMILES_CANONICAL CACTVS 3.341 CN[C@@H]1[C@@H](O)[C@@H](O)[C@@H](C)O[C@@H]1O[C@H]2[C@H](OC(=O)c3c(O)ccc4c(C)cc(OC)cc34)[C@@H](SC[C@H](NC(=O)CC[C@@H](N)C(O)=O)C(=O)NCC(O)=O)c5cc6c(C=C[C@]6(O)[C@H]7COC(=O)O7)cc25
NCG SMILES CACTVS 3.341 CN[CH]1[CH](O)[CH](O)[CH](C)O[CH]1O[CH]2[CH](OC(=O)c3c(O)ccc4c(C)cc(OC)cc34)[CH](SC[CH](NC(=O)CC[CH](N)C(O)=O)C(=O)NCC(O)=O)c5cc6c(C=C[C]6(O)[CH]7COC(=O)O7)cc25
NCG SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 Cc1cc(cc2c1ccc(c2C(=O)O[C@H]3[C@@H](c4cc5c(cc4[C@@H]3SC[C@@H](C(=O)NCC(=O)O)NC(=O)CC[C@H](C(=O)O)N)[C@](C=C5)([C@H]6COC(=O)O6)O)O[C@@H]7[C@@H]([C@H]([C@H]([C@H](O7)C)O)O)NC)O)OC
NCG SMILES "OpenEye OEToolkits" 1.5.0 Cc1cc(cc2c1ccc(c2C(=O)OC3C(c4cc5c(cc4C3SCC(C(=O)NCC(=O)O)NC(=O)CCC(C(=O)O)N)C(C=C5)(C6COC(=O)O6)O)OC7C(C(C(C(O7)C)O)O)NC)O)OC
NCG InChI InChI 1.03 InChI=1S/C45H52N4O18S/c1-18-11-21(62-4)13-23-22(18)5-7-29(50)33(23)42(59)66-38-37(67-43-34(47-3)36(55)35(54)19(2)64-43)24-12-20-9-10-45(61,30-16-63-44(60)65-30)26(20)14-25(24)39(38)68-17-28(40(56)48-15-32(52)53)49-31(51)8-6-27(46)41(57)58/h5,7,9-14,19,27-28,30,34-39,43,47,50,54-55,61H,6,8,15-17,46H2,1-4H3,(H,48,56)(H,49,51)(H,52,53)(H,57,58)/t19-,27-,28+,30-,34-,35+,36-,37-,38+,39+,43-,45-/m1/s1
NCG InChIKey InChI 1.03 HZICOJKOTQKXNL-RKDHACFISA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NCG "SYSTEMATIC NAME" ACDLabs 10.04 D-gamma-glutamyl-S-{(1S,2S,3R,7R)-3-{[2,6-dideoxy-2-(methylamino)-alpha-D-galactopyranosyl]oxy}-7-hydroxy-2-{[(2-hydroxy-7-methoxy-5-methylnaphthalen-1-yl)carbonyl]oxy}-7-[(4R)-2-oxo-1,3-dioxolan-4-yl]-1,2,3,7-tetrahydro-s-indacen-1-yl}-L-cysteinylglycine
NCG "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2R)-2-amino-5-[[(2R)-1-(carboxymethylamino)-3-[[(1S,2S,3R,7R)-3-[(2R,3R,4R,5R,6R)-4,5-dihydroxy-6-methyl-3-methylamino-oxan-2-yl]oxy-7-hydroxy-2-(2-hydroxy-7-methoxy-5-methyl-naphthalen-1-yl)carbonyloxy-7-[(4R)-2-oxo-1,3-dioxolan-4-yl]-2,3-dihydro-1H-s-indacen-1-yl]sulfanyl]-1-oxo-propan-2-yl]amino]-5-oxo-pentanoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NCG 'Create component' 2002-09-26 RCSB
NCG 'Modify descriptor' 2011-06-04 RCSB
NCG 'Modify synonyms' 2020-05-27 PDBE
#
loop_
_pdbx_chem_comp_synonyms.ordinal
_pdbx_chem_comp_synonyms.comp_id
_pdbx_chem_comp_synonyms.name
_pdbx_chem_comp_synonyms.provenance
_pdbx_chem_comp_synonyms.type
1 NCG NCSI-GLU ? ?
2 NCG "NEOCARZINOSTATIN-GLUTATHIONE CHROMOPHORE" ? ?
#
loop_
_pdbe_chem_comp_synonyms.comp_id
_pdbe_chem_comp_synonyms.name
_pdbe_chem_comp_synonyms.provenance
_pdbe_chem_comp_synonyms.type
NCG NCSI-GLU wwPDB ?
NCG 'NEOCARZINOSTATIN-GLUTATHIONE CHROMOPHORE' wwPDB ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
NCG C1 C 10.482 -1.570 1
NCG C2 C 9.015 -1.880 2
NCG C3 C 8.013 -0.763 3
NCG C4 C 8.479 0.662 4
NCG C5 C 9.947 0.972 5
NCG C6 C 10.948 -0.145 6
NCG C7 C 6.522 -0.757 7
NCG C8 C 6.065 0.662 8
NCG C9 C 7.272 1.538 9
NCG C10 C 12.440 -0.151 10
NCG C11 C 12.896 -1.570 11
NCG C12 C 11.690 -2.446 12
NCG C13 C 6.390 2.752 13
NCG O14 O 4.890 2.752 14
NCG C15 C 4.427 4.178 15
NCG O16 O 5.640 5.060 16
NCG C17 C 6.854 4.178 17
NCG O19 O 3.000 4.642 18
NCG O26 O 14.322 -2.036 19
NCG C27 C 15.439 -1.034 20
NCG O28 O 15.129 0.433 21
NCG O29 O 8.153 2.752 22
NCG C68 C 16.865 -1.501 23
NCG C69 C 18.790 2.077 24
NCG C70 C 17.635 1.025 25
NCG C71 C 17.981 -0.499 26
NCG C72 C 19.407 -0.965 27
NCG C73 C 20.586 0.061 28
NCG C74 C 20.275 1.592 29
NCG C75 C 17.174 -2.968 30
NCG C76 C 18.600 -3.434 31
NCG C77 C 19.716 -2.433 32
NCG O82 O 16.058 -3.970 33
NCG C83 C 22.006 -0.422 34
NCG O87 O 18.475 3.544 35
NCG C88 C 19.588 4.550 36
NCG C94 C 10.390 -6.196 37
NCG C95 C 10.390 -4.696 38
NCG O96 O 9.091 -3.946 39
NCG C97 C 7.792 -4.696 40
NCG C98 C 9.091 -6.946 41
NCG C99 C 7.792 -6.196 42
NCG OXS O 6.493 -6.946 43
NCG CXU C 6.493 -3.946 44
NCG OXX O 11.690 -3.946 45
NCG NX0 N 11.690 -6.946 46
NCG CX2 C 11.690 -8.446 47
NCG OXA O 9.091 -8.446 48
NCG N N 15.097 3.480 49
NCG CA C 13.606 3.642 50
NCG CB C 12.720 2.432 51
NCG SG S 13.325 1.060 52
NCG C C 13.001 5.015 53
NCG O5 O 13.886 6.225 54
NCG N1 N 11.509 5.177 55
NCG C21 C 10.904 6.549 56
NCG C22 C 9.413 6.711 57
NCG O2 O 8.807 8.084 58
NCG O3 O 8.527 5.501 59
NCG C20 C 15.983 4.691 60
NCG O34 O 15.378 6.063 61
NCG C18 C 17.474 4.529 62
NCG C14 C 18.360 5.739 63
NCG C16 C 19.851 5.577 64
NCG C19 C 20.737 6.788 65
NCG O1 O 20.132 8.160 66
NCG O4 O 22.229 6.626 67
NCG N2 N 20.457 4.205 68
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
NCG C1 C2 DOUBLE NONE 1
NCG C1 C6 SINGLE NONE 2
NCG C1 C12 SINGLE NONE 3
NCG C2 C3 SINGLE NONE 4
NCG C3 C4 DOUBLE NONE 5
NCG C3 C7 SINGLE NONE 6
NCG C4 C5 SINGLE NONE 7
NCG C4 C9 SINGLE NONE 8
NCG C5 C6 DOUBLE NONE 9
NCG C6 C10 SINGLE NONE 10
NCG C7 C8 DOUBLE NONE 11
NCG C8 C9 SINGLE NONE 12
NCG C9 C13 SINGLE NONE 13
NCG C9 O29 SINGLE BEGINWEDGE 14
NCG C10 C11 SINGLE NONE 15
NCG C10 SG SINGLE BEGINDASH 16
NCG C11 C12 SINGLE NONE 17
NCG C11 O26 SINGLE BEGINWEDGE 18
NCG C12 OXX SINGLE BEGINDASH 19
NCG C13 O14 SINGLE NONE 20
NCG C13 C17 SINGLE BEGINDASH 21
NCG O14 C15 SINGLE NONE 22
NCG C15 O16 SINGLE NONE 23
NCG C15 O19 DOUBLE NONE 24
NCG O16 C17 SINGLE NONE 25
NCG O26 C27 SINGLE NONE 26
NCG C27 O28 DOUBLE NONE 27
NCG C27 C68 SINGLE NONE 28
NCG C68 C71 DOUBLE NONE 29
NCG C68 C75 SINGLE NONE 30
NCG C69 C70 DOUBLE NONE 31
NCG C69 C74 SINGLE NONE 32
NCG C69 O87 SINGLE NONE 33
NCG C70 C71 SINGLE NONE 34
NCG C71 C72 SINGLE NONE 35
NCG C72 C73 SINGLE NONE 36
NCG C72 C77 DOUBLE NONE 37
NCG C73 C74 DOUBLE NONE 38
NCG C73 C83 SINGLE NONE 39
NCG C75 C76 DOUBLE NONE 40
NCG C75 O82 SINGLE NONE 41
NCG C76 C77 SINGLE NONE 42
NCG O87 C88 SINGLE NONE 43
NCG C94 C95 SINGLE NONE 44
NCG C94 C98 SINGLE NONE 45
NCG C94 NX0 SINGLE BEGINDASH 46
NCG C95 O96 SINGLE NONE 47
NCG C95 OXX SINGLE BEGINDASH 48
NCG O96 C97 SINGLE NONE 49
NCG C97 C99 SINGLE NONE 50
NCG C97 CXU SINGLE BEGINWEDGE 51
NCG C98 C99 SINGLE NONE 52
NCG C98 OXA SINGLE BEGINWEDGE 53
NCG C99 OXS SINGLE BEGINWEDGE 54
NCG NX0 CX2 SINGLE NONE 55
NCG N CA SINGLE NONE 56
NCG N C20 SINGLE NONE 57
NCG CA CB SINGLE BEGINWEDGE 58
NCG CA C SINGLE NONE 59
NCG CB SG SINGLE NONE 60
NCG C O5 DOUBLE NONE 61
NCG C N1 SINGLE NONE 62
NCG N1 C21 SINGLE NONE 63
NCG C21 C22 SINGLE NONE 64
NCG C22 O2 DOUBLE NONE 65
NCG C22 O3 SINGLE NONE 66
NCG C20 O34 DOUBLE NONE 67
NCG C20 C18 SINGLE NONE 68
NCG C18 C14 SINGLE NONE 69
NCG C14 C16 SINGLE NONE 70
NCG C16 C19 SINGLE NONE 71
NCG C16 N2 SINGLE BEGINDASH 72
NCG C19 O1 DOUBLE NONE 73
NCG C19 O4 SINGLE NONE 74
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
NCG MurckoScaffold S1 scaffold 'O=C1OC[C@H](C2C=Cc3cc4c(cc32)C[C@@H](OC(=O)c2cccc3ccccc23)[C@@H]4O[C@@H]2CCCCO2)O1' InChI=1S/C31H28O7/c32-30(23-9-5-7-18-6-1-2-8-21(18)23)36-26-16-20-15-24-19(11-12-22(24)27-17-35-31(33)37-27)14-25(20)29(26)38-28-10-3-4-13-34-28/h1-2,5-9,11-12,14-15,22,26-29H,3-4,10,13,16-17H2/t22?,26-,27-,28-,29-/m1/s1 YSSVJEFKHSCLJQ-RYBJSEGTSA-N
NCG amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
NCG napthalene F2 fragment c1ccc2ccccc2c1 InChI=1S/C10H8/c1-2-6-10-8-4-3-7-9(10)5-1/h1-8H UFWIBTONFRDIAS-UHFFFAOYSA-N
NCG peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
NCG phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
NCG pyranose F5 fragment OC1CCCCO1 InChI=1S/C5H10O2/c6-5-3-1-2-4-7-5/h5-6H,1-4H2 CELWCAITJAEQNL-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
NCG C1 S1 1
NCG C2 S1 1
NCG C3 S1 1
NCG C4 S1 1
NCG C5 S1 1
NCG C6 S1 1
NCG C7 S1 1
NCG C8 S1 1
NCG C9 S1 1
NCG C10 S1 1
NCG C11 S1 1
NCG C12 S1 1
NCG C13 S1 1
NCG O14 S1 1
NCG C15 S1 1
NCG O16 S1 1
NCG C17 S1 1
NCG O19 S1 1
NCG O26 S1 1
NCG C27 S1 1
NCG O28 S1 1
NCG C68 S1 1
NCG C69 S1 1
NCG C70 S1 1
NCG C71 S1 1
NCG C72 S1 1
NCG C73 S1 1
NCG C74 S1 1
NCG C75 S1 1
NCG C76 S1 1
NCG C77 S1 1
NCG C94 S1 1
NCG C95 S1 1
NCG O96 S1 1
NCG C97 S1 1
NCG C98 S1 1
NCG C99 S1 1
NCG OXX S1 1
NCG N F1 1
NCG C20 F1 1
NCG O34 F1 1
NCG C18 F1 1
NCG N1 F1 2
NCG C F1 2
NCG O5 F1 2
NCG CA F1 2
NCG C69 F2 1
NCG C74 F2 1
NCG C73 F2 1
NCG C72 F2 1
NCG C71 F2 1
NCG C70 F2 1
NCG C68 F2 1
NCG C75 F2 1
NCG C76 F2 1
NCG C77 F2 1
NCG O5 F3 1
NCG C F3 1
NCG CA F3 1
NCG N F3 1
NCG O2 F3 2
NCG C22 F3 2
NCG C21 F3 2
NCG N1 F3 2
NCG O1 F3 3
NCG C19 F3 3
NCG C16 F3 3
NCG N2 F3 3
NCG C1 F4 1
NCG C2 F4 1
NCG C3 F4 1
NCG C4 F4 1
NCG C5 F4 1
NCG C6 F4 1
NCG C68 F4 2
NCG C71 F4 2
NCG C72 F4 2
NCG C77 F4 2
NCG C76 F4 2
NCG C75 F4 2
NCG C69 F4 3
NCG C70 F4 3
NCG C71 F4 3
NCG C72 F4 3
NCG C73 F4 3
NCG C74 F4 3
NCG C99 F5 1
NCG C97 F5 1
NCG O96 F5 1
NCG C95 F5 1
NCG C94 F5 1
NCG C98 F5 1
NCG OXX F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id NCG
_pdbe_chem_comp_rdkit_properties.exactmw 968.300
_pdbe_chem_comp_rdkit_properties.amw 968.988
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 22
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 11
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 27
_pdbe_chem_comp_rdkit_properties.NumHBD 10
_pdbe_chem_comp_rdkit_properties.NumHBA 21
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 68
_pdbe_chem_comp_rdkit_properties.NumAtoms 120
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 23
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.467
_pdbe_chem_comp_rdkit_properties.NumRings 7
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 4
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 12
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 465.438
_pdbe_chem_comp_rdkit_properties.tpsa 341.290
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.066
_pdbe_chem_comp_rdkit_properties.CrippenMR 232.320
_pdbe_chem_comp_rdkit_properties.chi0v 32.862
_pdbe_chem_comp_rdkit_properties.chi1v 17.939
_pdbe_chem_comp_rdkit_properties.chi2v 9.177
_pdbe_chem_comp_rdkit_properties.chi3v 9.177
_pdbe_chem_comp_rdkit_properties.chi4v 6.281
_pdbe_chem_comp_rdkit_properties.chi0n 84.046
_pdbe_chem_comp_rdkit_properties.chi1n 42.308
_pdbe_chem_comp_rdkit_properties.chi2n 8.288
_pdbe_chem_comp_rdkit_properties.chi3n 8.288
_pdbe_chem_comp_rdkit_properties.chi4n 5.467
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -6.050
_pdbe_chem_comp_rdkit_properties.kappa1 15.995
_pdbe_chem_comp_rdkit_properties.kappa2 20.272
_pdbe_chem_comp_rdkit_properties.kappa3 9.916
_pdbe_chem_comp_rdkit_properties.Phi 4.769
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
NCG UniChem PDBe NCG
NCG UniChem ZINC ZINC000263620540
NCG UniChem PubChem 447187
#