data_NCI
#
_chem_comp.id NCI
_chem_comp.name 3,6-Bis{3-[(2R)-(2-ethylpiperidino)]propionamido}acridine
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAD
_chem_comp.formula "C33 H45 N5 O2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "N,N'-acridine-3,6-diylbis{3-[(2R)-2-ethylpiperidin-1-yl]propanamide}"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-10-02
_chem_comp.pdbx_modified_date 2021-03-13
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 543.743
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code NCI
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3EQW
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
NCI O39 O39 O 0 1 N N N N N N 12.815 -2.855 -11.189 -5.882 -1.106 0.308 O39 NCI 1
NCI C9 C9 C 0 1 N N N N N N 14.002 -3.108 -11.240 -5.879 -0.066 -0.317 C9 NCI 2
NCI C10 C10 C 0 1 N N N N N N 14.858 -2.580 -12.377 -7.155 0.720 -0.476 C10 NCI 3
NCI C13 C13 C 0 1 N N N N N N 14.042 -2.314 -13.638 -8.295 -0.006 0.241 C13 NCI 4
NCI N16 N16 N 0 1 N N N N N N 14.722 -1.404 -14.569 -9.538 0.761 0.086 N16 NCI 5
NCI C18 C18 C 0 1 N N R N N N 15.295 -2.090 -15.751 -10.681 0.030 0.647 C18 NCI 6
NCI C20 C20 C 0 1 N N N N N N 16.313 -3.131 -15.311 -10.748 -1.366 0.024 C20 NCI 7
NCI C23 C23 C 0 1 N N N N N N 17.682 -2.767 -15.862 -10.821 -1.242 -1.499 C23 NCI 8
NCI C27 C27 C 0 1 N N N N N N 16.080 -1.085 -16.601 -11.974 0.788 0.339 C27 NCI 9
NCI C30 C30 C 0 1 N N N N N N 15.243 0.107 -17.022 -11.894 2.191 0.947 C30 NCI 10
NCI C33 C33 C 0 1 N N N N N N 14.634 0.754 -15.789 -10.668 2.914 0.383 C33 NCI 11
NCI C36 C36 C 0 1 N N N N N N 13.866 -0.271 -14.956 -9.413 2.094 0.689 C36 NCI 12
NCI N7 N7 N 0 1 N N N N N N 14.621 -3.863 -10.324 -4.735 0.388 -0.865 N7 NCI 13
NCI C6 C6 C 0 1 Y N N N N N 14.096 -4.414 -9.137 -3.535 -0.289 -0.636 C6 NCI 14
NCI C40 C40 C 0 1 Y N N N N N 14.968 -5.148 -8.318 -3.545 -1.687 -0.544 C40 NCI 15
NCI C42 C42 C 0 1 Y N N N N N 14.539 -5.672 -7.099 -2.406 -2.390 -0.322 C42 NCI 16
NCI C4 C4 C 0 1 Y N N N N N 12.787 -4.181 -8.707 -2.375 0.430 -0.512 C4 NCI 17
NCI C3 C3 C 0 1 Y N N N N N 12.346 -4.704 -7.488 -1.160 -0.244 -0.281 C3 NCI 18
NCI N1 N1 N 0 1 Y N N N N N 11.064 -4.490 -7.084 -0.020 0.430 -0.157 N1 NCI 19
NCI C44 C44 C 0 1 Y N N N N N 13.228 -5.445 -6.680 -1.180 -1.707 -0.180 C44 NCI 20
NCI C45 C45 C 0 1 Y N N N N N 12.787 -5.960 -5.464 0.011 -2.399 0.049 C45 NCI 21
NCI C2 C2 C 0 1 Y N N N N N 11.474 -5.736 -5.069 1.185 -1.655 0.179 C2 NCI 22
NCI C47 C47 C 0 1 Y N N N N N 11.011 -6.251 -3.859 2.426 -2.283 0.413 C47 NCI 23
NCI C49 C49 C 0 1 Y N N N N N 9.688 -5.995 -3.485 3.548 -1.530 0.535 C49 NCI 24
NCI C51 C51 C 0 1 Y N N N N N 8.811 -5.260 -4.307 3.505 -0.133 0.434 C51 NCI 25
NCI C85 C85 C 0 1 Y N N N N N 9.289 -4.743 -5.517 2.330 0.535 0.209 C85 NCI 26
NCI C87 C87 C 0 1 Y N N N N N 10.613 -4.985 -5.905 1.134 -0.194 0.061 C87 NCI 27
NCI N52 N52 N 0 1 N N N N N N 7.497 -4.995 -3.834 4.689 0.596 0.567 N52 NCI 28
NCI C54 C54 C 0 1 N N N N N N 6.510 -4.340 -4.471 5.849 0.088 0.106 C54 NCI 29
NCI O84 O84 O 0 1 N N N N N N 6.575 -3.955 -5.631 5.851 -0.958 -0.507 O84 NCI 30
NCI C55 C55 C 0 1 N N N N N N 5.232 -4.124 -3.679 7.143 0.821 0.352 C55 NCI 31
NCI C58 C58 C 0 1 N N N N N N 4.176 -3.361 -4.498 8.299 0.036 -0.271 C58 NCI 32
NCI N61 N61 N 0 1 N N N N N N 3.628 -2.217 -3.743 9.560 0.750 -0.032 N61 NCI 33
NCI C63 C63 C 0 1 N N R N N N 2.407 -1.666 -4.373 10.714 -0.083 -0.396 C63 NCI 34
NCI C77 C77 C 0 1 N N N N N N 2.704 -1.357 -5.836 10.627 -1.423 0.338 C77 NCI 35
NCI C80 C80 C 0 1 N N N N N N 1.474 -1.451 -6.721 10.529 -1.174 1.844 C80 NCI 36
NCI C66 C66 C 0 1 N N N N N N 2.086 -0.320 -3.720 12.007 0.633 0.002 C66 NCI 37
NCI C69 C69 C 0 1 N N N N N N 1.922 -0.470 -2.215 12.080 1.982 -0.719 C69 NCI 38
NCI C72 C72 C 0 1 N N N N N N 3.228 -0.999 -1.633 10.843 2.810 -0.361 C72 NCI 39
NCI C75 C75 C 0 1 N N N N N N 3.535 -2.348 -2.283 9.584 2.032 -0.748 C75 NCI 40
NCI H10 H10 H 0 1 N N N N N N 15.324 -1.637 -12.056 -7.026 1.712 -0.042 H10 NCI 41
NCI H10A H10A H 0 0 N N N N N N 15.612 -3.344 -12.616 -7.393 0.815 -1.535 H10A NCI 42
NCI H13 H13 H 0 1 N N N N N N 13.871 -3.272 -14.150 -8.423 -0.998 -0.193 H13 NCI 43
NCI H13A H13A H 0 0 N N N N N N 13.099 -1.837 -13.332 -8.056 -0.101 1.300 H13A NCI 44
NCI H18 H18 H 0 1 N N N N N N 14.463 -2.545 -16.308 -10.561 -0.060 1.726 H18 NCI 45
NCI H20 H20 H 0 1 N N N N N N 16.356 -3.160 -14.212 -9.858 -1.931 0.300 H20 NCI 46
NCI H20A H20A H 0 0 N N N N N N 16.015 -4.119 -15.693 -11.635 -1.885 0.389 H20A NCI 47
NCI H23 H23 H 0 1 N N N N N N 17.626 -2.679 -16.957 -10.778 -2.235 -1.947 H23 NCI 48
NCI H23A H23A H 0 0 N N N N N N 18.006 -1.807 -15.433 -11.757 -0.757 -1.780 H23A NCI 49
NCI H23B H23B H 0 0 N N N N N N 18.405 -3.551 -15.594 -9.982 -0.646 -1.856 H23B NCI 50
NCI H27 H27 H 0 1 N N N N N N 16.931 -0.719 -16.008 -12.102 0.866 -0.740 H27 NCI 51
NCI H27A H27A H 0 0 N N N N N N 16.405 -1.604 -17.515 -12.821 0.253 0.769 H27A NCI 52
NCI H30 H30 H 0 1 N N N N N N 15.879 0.837 -17.544 -12.795 2.750 0.694 H30 NCI 53
NCI H30A H30A H 0 0 N N N N N N 14.441 -0.226 -17.697 -11.805 2.114 2.031 H30A NCI 54
NCI H33 H33 H 0 1 N N N N N N 15.440 1.182 -15.175 -10.776 3.026 -0.696 H33 NCI 55
NCI H33A H33A H 0 0 N N N N N N 13.934 1.539 -16.113 -10.582 3.898 0.844 H33A NCI 56
NCI H36 H36 H 0 1 N N N N N N 13.023 -0.651 -15.552 -9.298 1.995 1.769 H36 NCI 57
NCI H36A H36A H 0 0 N N N N N N 13.512 0.224 -14.039 -8.539 2.599 0.276 H36A NCI 58
NCI HN7 HN7 H 0 1 N N N N N N 15.584 -4.063 -10.506 -4.744 1.184 -1.418 HN7 NCI 59
NCI H40 H40 H 0 1 N N N N N N 15.987 -5.309 -8.637 -4.480 -2.216 -0.651 H40 NCI 60
NCI H42 H42 H 0 1 N N N N N N 15.215 -6.248 -6.485 -2.438 -3.467 -0.255 H42 NCI 61
NCI H4 H4 H 0 1 N N N N N N 12.115 -3.596 -9.317 -2.392 1.507 -0.591 H4 NCI 62
NCI H45 H45 H 0 1 N N N N N N 13.458 -6.527 -4.835 0.023 -3.477 0.124 H45 NCI 63
NCI H47 H47 H 0 1 N N N N N N 11.660 -6.835 -3.224 2.483 -3.359 0.494 H47 NCI 64
NCI H49 H49 H 0 1 N N N N N N 9.328 -6.372 -2.539 4.495 -2.018 0.714 H49 NCI 65
NCI H85 H85 H 0 1 N N N N N N 8.638 -4.159 -6.150 2.323 1.612 0.136 H85 NCI 66
NCI HN52 HN52 H 0 0 N N N N N N 7.281 -5.336 -2.919 4.676 1.468 0.992 HN52 NCI 67
NCI H55 H55 H 0 1 N N N N N N 4.820 -5.105 -3.399 7.091 1.811 -0.100 H55 NCI 68
NCI H55A H55A H 0 0 N N N N N N 5.476 -3.525 -2.789 7.306 0.919 1.425 H55A NCI 69
NCI H58 H58 H 0 1 N N N N N N 4.645 -2.985 -5.419 8.351 -0.955 0.181 H58 NCI 70
NCI H58A H58A H 0 0 N N N N N N 3.351 -4.051 -4.727 8.135 -0.062 -1.344 H58A NCI 71
NCI H63 H63 H 0 1 N N N N N N 1.584 -2.388 -4.264 10.711 -0.257 -1.472 H63 NCI 72
NCI H77 H77 H 0 1 N N N N N N 3.099 -0.332 -5.900 9.743 -1.965 0.001 H77 NCI 73
NCI H77A H77A H 0 0 N N N N N N 3.428 -2.104 -6.193 11.518 -2.013 0.124 H77A NCI 74
NCI H80 H80 H 0 1 N N N N N N 0.571 -1.474 -6.093 9.595 -0.659 2.068 H80 NCI 75
NCI H80A H80A H 0 0 N N N N N N 1.435 -0.577 -7.388 10.554 -2.128 2.372 H80A NCI 76
NCI H80B H80B H 0 0 N N N N N N 1.525 -2.370 -7.323 11.370 -0.559 2.166 H80B NCI 77
NCI H66 H66 H 0 1 N N N N N N 2.909 0.381 -3.922 12.017 0.795 1.079 H66 NCI 78
NCI H66A H66A H 0 0 N N N N N N 1.143 0.058 -4.140 12.863 0.021 -0.283 H66A NCI 79
NCI H69 H69 H 0 1 N N N N N N 1.684 0.506 -1.768 12.978 2.514 -0.406 H69 NCI 80
NCI H69A H69A H 0 0 N N N N N N 1.103 -1.170 -1.995 12.109 1.818 -1.796 H69A NCI 81
NCI H72 H72 H 0 1 N N N N N N 4.043 -0.290 -1.841 10.835 3.007 0.711 H72 NCI 82
NCI H72A H72A H 0 0 N N N N N N 3.135 -1.118 -0.543 10.868 3.755 -0.904 H72A NCI 83
NCI H75 H75 H 0 1 N N N N N N 2.729 -3.055 -2.038 9.586 1.848 -1.822 H75 NCI 84
NCI H75A H75A H 0 0 N N N N N N 4.500 -2.712 -1.900 8.701 2.613 -0.481 H75A NCI 85
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
NCI C9 O39 DOUB N N 1
NCI C10 C9 SING N N 2
NCI C9 N7 SING N N 3
NCI C13 C10 SING N N 4
NCI C10 H10 SING N N 5
NCI C10 H10A SING N N 6
NCI N16 C13 SING N N 7
NCI C13 H13 SING N N 8
NCI C13 H13A SING N N 9
NCI C18 N16 SING N N 10
NCI C36 N16 SING N N 11
NCI C27 C18 SING N N 12
NCI C18 C20 SING N N 13
NCI C18 H18 SING N N 14
NCI C23 C20 SING N N 15
NCI C20 H20 SING N N 16
NCI C20 H20A SING N N 17
NCI C23 H23 SING N N 18
NCI C23 H23A SING N N 19
NCI C23 H23B SING N N 20
NCI C30 C27 SING N N 21
NCI C27 H27 SING N N 22
NCI C27 H27A SING N N 23
NCI C30 C33 SING N N 24
NCI C30 H30 SING N N 25
NCI C30 H30A SING N N 26
NCI C33 C36 SING N N 27
NCI C33 H33 SING N N 28
NCI C33 H33A SING N N 29
NCI C36 H36 SING N N 30
NCI C36 H36A SING N N 31
NCI N7 C6 SING N N 32
NCI N7 HN7 SING N N 33
NCI C6 C4 DOUB Y N 34
NCI C6 C40 SING Y N 35
NCI C40 C42 DOUB Y N 36
NCI C40 H40 SING N N 37
NCI C42 C44 SING Y N 38
NCI C42 H42 SING N N 39
NCI C4 C3 SING Y N 40
NCI C4 H4 SING N N 41
NCI C3 N1 DOUB Y N 42
NCI C3 C44 SING Y N 43
NCI N1 C87 SING Y N 44
NCI C44 C45 DOUB Y N 45
NCI C45 C2 SING Y N 46
NCI C45 H45 SING N N 47
NCI C87 C2 SING Y N 48
NCI C2 C47 DOUB Y N 49
NCI C47 C49 SING Y N 50
NCI C47 H47 SING N N 51
NCI C51 C49 DOUB Y N 52
NCI C49 H49 SING N N 53
NCI C85 C51 SING Y N 54
NCI C51 N52 SING N N 55
NCI C87 C85 DOUB Y N 56
NCI C85 H85 SING N N 57
NCI C54 N52 SING N N 58
NCI N52 HN52 SING N N 59
NCI O84 C54 DOUB N N 60
NCI C54 C55 SING N N 61
NCI C58 C55 SING N N 62
NCI C55 H55 SING N N 63
NCI C55 H55A SING N N 64
NCI C58 N61 SING N N 65
NCI C58 H58 SING N N 66
NCI C58 H58A SING N N 67
NCI C63 N61 SING N N 68
NCI N61 C75 SING N N 69
NCI C77 C63 SING N N 70
NCI C63 C66 SING N N 71
NCI C63 H63 SING N N 72
NCI C80 C77 SING N N 73
NCI C77 H77 SING N N 74
NCI C77 H77A SING N N 75
NCI C80 H80 SING N N 76
NCI C80 H80A SING N N 77
NCI C80 H80B SING N N 78
NCI C66 C69 SING N N 79
NCI C66 H66 SING N N 80
NCI C66 H66A SING N N 81
NCI C69 C72 SING N N 82
NCI C69 H69 SING N N 83
NCI C69 H69A SING N N 84
NCI C75 C72 SING N N 85
NCI C72 H72 SING N N 86
NCI C72 H72A SING N N 87
NCI C75 H75 SING N N 88
NCI C75 H75A SING N N 89
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
NCI SMILES ACDLabs 10.04 O=C(Nc3cc2nc1cc(ccc1cc2cc3)NC(=O)CCN4C(CCCC4)CC)CCN5C(CC)CCCC5
NCI SMILES_CANONICAL CACTVS 3.341 CC[C@@H]1CCCCN1CCC(=O)Nc2ccc3cc4ccc(NC(=O)CCN5CCCC[C@H]5CC)cc4nc3c2
NCI SMILES CACTVS 3.341 CC[CH]1CCCCN1CCC(=O)Nc2ccc3cc4ccc(NC(=O)CCN5CCCC[CH]5CC)cc4nc3c2
NCI SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CC[C@@H]1CCCC[N@]1CCC(=O)Nc2ccc3cc4ccc(cc4nc3c2)NC(=O)CC[N@@]5CCCC[C@H]5CC
NCI SMILES "OpenEye OEToolkits" 1.5.0 CCC1CCCCN1CCC(=O)Nc2ccc3cc4ccc(cc4nc3c2)NC(=O)CCN5CCCCC5CC
NCI InChI InChI 1.03 InChI=1S/C33H45N5O2/c1-3-28-9-5-7-17-37(28)19-15-32(39)34-26-13-11-24-21-25-12-14-27(23-31(25)36-30(24)22-26)35-33(40)16-20-38-18-8-6-10-29(38)4-2/h11-14,21-23,28-29H,3-10,15-20H2,1-2H3,(H,34,39)(H,35,40)/t28-,29-/m1/s1
NCI InChIKey InChI 1.03 ZWPUGYBFVBXUSX-FQLXRVMXSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
NCI "SYSTEMATIC NAME" ACDLabs 10.04 "N,N'-acridine-3,6-diylbis{3-[(2R)-2-ethylpiperidin-1-yl]propanamide}"
NCI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 3-[(1S,2R)-2-ethylpiperidin-1-yl]-N-[6-[3-[(1S,2R)-2-ethylpiperidin-1-yl]propanoylamino]acridin-3-yl]propanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
NCI 'Create component' 2008-10-02 RCSB
NCI 'Modify aromatic_flag' 2011-06-04 RCSB
NCI 'Modify descriptor' 2011-06-04 RCSB
NCI 'Modify synonyms' 2021-03-13 RCSB
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id NCI
_pdbx_chem_comp_synonyms.name "N,N'-acridine-3,6-diylbis{3-[(2R)-2-ethylpiperidin-1-yl]propanamide}"
_pdbx_chem_comp_synonyms.provenance PDB
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id NCI
_pdbe_chem_comp_synonyms.name "N,N'-acridine-3,6-diylbis{3-[(2R)-2-ethylpiperidin-1-yl]propanamide}"
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
NCI O39 O 22.692 -2.583 1
NCI C9 C 22.686 -1.083 2
NCI C10 C 23.983 -0.328 3
NCI C13 C 25.284 -1.073 4
NCI N16 N 26.581 -0.318 5
NCI C18 C 27.883 -1.063 6
NCI C20 C 27.888 -2.563 7
NCI C23 C 29.190 -3.308 8
NCI C27 C 29.179 -0.308 9
NCI C30 C 29.173 1.192 10
NCI C33 C 27.871 1.937 11
NCI C36 C 26.575 1.182 12
NCI N7 N 21.385 -0.338 13
NCI C6 C 20.088 -1.093 14
NCI C40 C 20.088 -2.656 15
NCI C42 C 18.729 -3.427 16
NCI C4 C 18.729 -0.323 17
NCI C3 C 17.388 -1.125 18
NCI N1 N 16.089 -0.374 19
NCI C44 C 17.388 -2.625 20
NCI C45 C 16.089 -3.374 21
NCI C2 C 14.790 -2.625 22
NCI C47 C 13.450 -3.427 23
NCI C49 C 12.090 -2.656 24
NCI C51 C 12.090 -1.093 25
NCI C85 C 13.450 -0.323 26
NCI C87 C 14.790 -1.125 27
NCI N52 N 10.794 -0.338 28
NCI C54 C 9.492 -1.083 29
NCI O84 O 9.486 -2.583 30
NCI C55 C 8.196 -0.328 31
NCI C58 C 6.894 -1.073 32
NCI N61 N 5.598 -0.318 33
NCI C63 C 5.604 1.182 34
NCI C77 C 6.906 1.927 35
NCI C80 C 6.912 3.427 36
NCI C66 C 4.308 1.937 37
NCI C69 C 3.006 1.192 38
NCI C72 C 3.000 -0.308 39
NCI C75 C 4.296 -1.063 40
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
NCI C9 O39 DOUBLE NONE 1
NCI C10 C9 SINGLE NONE 2
NCI C9 N7 SINGLE NONE 3
NCI C13 C10 SINGLE NONE 4
NCI N16 C13 SINGLE NONE 5
NCI C18 N16 SINGLE NONE 6
NCI C36 N16 SINGLE NONE 7
NCI C27 C18 SINGLE NONE 8
NCI C18 C20 SINGLE BEGINWEDGE 9
NCI C23 C20 SINGLE NONE 10
NCI C30 C27 SINGLE NONE 11
NCI C30 C33 SINGLE NONE 12
NCI C33 C36 SINGLE NONE 13
NCI N7 C6 SINGLE NONE 14
NCI C6 C4 SINGLE NONE 15
NCI C6 C40 DOUBLE NONE 16
NCI C40 C42 SINGLE NONE 17
NCI C42 C44 DOUBLE NONE 18
NCI C4 C3 DOUBLE NONE 19
NCI C3 N1 SINGLE NONE 20
NCI C3 C44 SINGLE NONE 21
NCI N1 C87 DOUBLE NONE 22
NCI C44 C45 SINGLE NONE 23
NCI C45 C2 DOUBLE NONE 24
NCI C87 C2 SINGLE NONE 25
NCI C2 C47 SINGLE NONE 26
NCI C47 C49 DOUBLE NONE 27
NCI C51 C49 SINGLE NONE 28
NCI C85 C51 DOUBLE NONE 29
NCI C51 N52 SINGLE NONE 30
NCI C87 C85 SINGLE NONE 31
NCI C54 N52 SINGLE NONE 32
NCI O84 C54 DOUBLE NONE 33
NCI C54 C55 SINGLE NONE 34
NCI C58 C55 SINGLE NONE 35
NCI C58 N61 SINGLE NONE 36
NCI C63 N61 SINGLE NONE 37
NCI N61 C75 SINGLE NONE 38
NCI C63 C77 SINGLE BEGINWEDGE 39
NCI C63 C66 SINGLE NONE 40
NCI C80 C77 SINGLE NONE 41
NCI C66 C69 SINGLE NONE 42
NCI C69 C72 SINGLE NONE 43
NCI C75 C72 SINGLE NONE 44
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
NCI MurckoScaffold S1 scaffold O=C(CCN1CCCCC1)Nc1ccc2cc3ccc(NC(=O)CCN4CCCCC4)cc3nc2c1 InChI=1S/C29H37N5O2/c35-28(11-17-33-13-3-1-4-14-33)30-24-9-7-22-19-23-8-10-25(21-27(23)32-26(22)20-24)31-29(36)12-18-34-15-5-2-6-16-34/h7-10,19-21H,1-6,11-18H2,(H,30,35)(H,31,36) LOWHFCSBBFGECH-UHFFFAOYSA-N
NCI acridine F1 fragment c1ccc2nc3ccccc3cc2c1 InChI=1S/C13H9N/c1-3-7-12-10(5-1)9-11-6-2-4-8-13(11)14-12/h1-9H DZBUGLKDJFMEHC-UHFFFAOYSA-N
NCI amide F2 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
NCI phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
NCI pyridine F4 fragment c1ccncc1 InChI=1S/C5H5N/c1-2-4-6-5-3-1/h1-5H JUJWROOIHBZHMG-UHFFFAOYSA-N
NCI quinoline F5 fragment c1ccc2ncccc2c1 InChI=1S/C9H7N/c1-2-6-9-8(4-1)5-3-7-10-9/h1-7H SMWDFEZZVXVKRB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
NCI O39 S1 1
NCI C9 S1 1
NCI C10 S1 1
NCI C13 S1 1
NCI N16 S1 1
NCI C18 S1 1
NCI C27 S1 1
NCI C30 S1 1
NCI C33 S1 1
NCI C36 S1 1
NCI N7 S1 1
NCI C6 S1 1
NCI C40 S1 1
NCI C42 S1 1
NCI C4 S1 1
NCI C3 S1 1
NCI N1 S1 1
NCI C44 S1 1
NCI C45 S1 1
NCI C2 S1 1
NCI C47 S1 1
NCI C49 S1 1
NCI C51 S1 1
NCI C85 S1 1
NCI C87 S1 1
NCI N52 S1 1
NCI C54 S1 1
NCI O84 S1 1
NCI C55 S1 1
NCI C58 S1 1
NCI N61 S1 1
NCI C63 S1 1
NCI C66 S1 1
NCI C69 S1 1
NCI C72 S1 1
NCI C75 S1 1
NCI C6 F1 1
NCI C40 F1 1
NCI C42 F1 1
NCI C44 F1 1
NCI C3 F1 1
NCI C4 F1 1
NCI N1 F1 1
NCI C87 F1 1
NCI C2 F1 1
NCI C45 F1 1
NCI C47 F1 1
NCI C49 F1 1
NCI C51 F1 1
NCI C85 F1 1
NCI N7 F2 1
NCI C9 F2 1
NCI O39 F2 1
NCI C10 F2 1
NCI N52 F2 2
NCI C54 F2 2
NCI O84 F2 2
NCI C55 F2 2
NCI C6 F3 1
NCI C4 F3 1
NCI C3 F3 1
NCI C44 F3 1
NCI C42 F3 1
NCI C40 F3 1
NCI C2 F3 2
NCI C87 F3 2
NCI C85 F3 2
NCI C51 F3 2
NCI C49 F3 2
NCI C47 F3 2
NCI C3 F4 1
NCI C44 F4 1
NCI C45 F4 1
NCI C2 F4 1
NCI C87 F4 1
NCI N1 F4 1
NCI C40 F5 1
NCI C42 F5 1
NCI C44 F5 1
NCI C3 F5 1
NCI C4 F5 1
NCI C6 F5 1
NCI N1 F5 1
NCI C87 F5 1
NCI C2 F5 1
NCI C45 F5 1
NCI C49 F5 2
NCI C47 F5 2
NCI C2 F5 2
NCI C87 F5 2
NCI C85 F5 2
NCI C51 F5 2
NCI N1 F5 2
NCI C3 F5 2
NCI C44 F5 2
NCI C45 F5 2
#
_pdbe_chem_comp_rdkit_properties.comp_id NCI
_pdbe_chem_comp_rdkit_properties.exactmw 543.357
_pdbe_chem_comp_rdkit_properties.amw 543.756
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 7
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 2
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 12
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 5
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 40
_pdbe_chem_comp_rdkit_properties.NumAtoms 85
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 7
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 2
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.545
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 2
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 301.584
_pdbe_chem_comp_rdkit_properties.tpsa 77.570
_pdbe_chem_comp_rdkit_properties.CrippenClogP 4.956
_pdbe_chem_comp_rdkit_properties.CrippenMR 158.688
_pdbe_chem_comp_rdkit_properties.chi0v 19.553
_pdbe_chem_comp_rdkit_properties.chi1v 10.592
_pdbe_chem_comp_rdkit_properties.chi2v 4.515
_pdbe_chem_comp_rdkit_properties.chi3v 4.515
_pdbe_chem_comp_rdkit_properties.chi4v 2.851
_pdbe_chem_comp_rdkit_properties.chi0n 64.553
_pdbe_chem_comp_rdkit_properties.chi1n 32.986
_pdbe_chem_comp_rdkit_properties.chi2n 4.515
_pdbe_chem_comp_rdkit_properties.chi3n 4.515
_pdbe_chem_comp_rdkit_properties.chi4n 2.851
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.030
_pdbe_chem_comp_rdkit_properties.kappa1 6.472
_pdbe_chem_comp_rdkit_properties.kappa2 13.553
_pdbe_chem_comp_rdkit_properties.kappa3 7.180
_pdbe_chem_comp_rdkit_properties.Phi 2.193
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
NCI UniChem PDBe NCI
NCI UniChem ZINC ZINC000058649857
NCI UniChem PubChem 24963054
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
NCI O39 5.485 -3.082 -3.526 ETKDGv3 1
NCI C9 5.731 -2.217 -2.643 ETKDGv3 2
NCI C10 7.153 -1.966 -2.235 ETKDGv3 3
NCI C13 7.544 -2.819 -1.026 ETKDGv3 4
NCI N16 6.728 -2.442 0.161 ETKDGv3 5
NCI C18 7.510 -2.006 1.345 ETKDGv3 6
NCI C20 8.280 -0.688 1.103 ETKDGv3 7
NCI C23 7.333 0.489 0.874 ETKDGv3 8
NCI C27 8.430 -3.137 1.866 ETKDGv3 9
NCI C30 7.812 -4.533 1.657 ETKDGv3 10
NCI C33 6.280 -4.483 1.608 ETKDGv3 11
NCI C36 5.752 -3.498 0.535 ETKDGv3 12
NCI N7 4.665 -1.478 -2.023 ETKDGv3 13
NCI C6 3.275 -1.838 -2.095 ETKDGv3 14
NCI C40 2.876 -3.125 -2.145 ETKDGv3 15
NCI C42 1.437 -3.464 -2.176 ETKDGv3 16
NCI C4 2.252 -0.764 -2.030 ETKDGv3 17
NCI C3 0.950 -1.073 -2.053 ETKDGv3 18
NCI N1 -0.051 -0.048 -1.997 ETKDGv3 19
NCI C44 0.521 -2.486 -2.134 ETKDGv3 20
NCI C45 -0.926 -2.762 -2.157 ETKDGv3 21
NCI C2 -1.797 -1.743 -2.102 ETKDGv3 22
NCI C47 -3.252 -1.979 -2.133 ETKDGv3 23
NCI C49 -4.108 -0.951 -2.068 ETKDGv3 24
NCI C51 -3.638 0.460 -1.952 ETKDGv3 25
NCI C85 -2.323 0.741 -1.955 ETKDGv3 26
NCI C87 -1.322 -0.336 -2.019 ETKDGv3 27
NCI N52 -4.583 1.542 -1.894 ETKDGv3 28
NCI C54 -5.842 1.466 -1.208 ETKDGv3 29
NCI O84 -6.106 0.489 -0.456 ETKDGv3 30
NCI C55 -6.821 2.599 -1.312 ETKDGv3 31
NCI C58 -6.428 3.765 -0.394 ETKDGv3 32
NCI N61 -6.272 3.337 1.016 ETKDGv3 33
NCI C63 -7.527 2.912 1.706 ETKDGv3 34
NCI C77 -8.771 3.840 1.538 ETKDGv3 35
NCI C80 -8.627 5.297 1.974 ETKDGv3 36
NCI C66 -7.269 2.463 3.169 ETKDGv3 37
NCI C69 -6.316 3.374 3.948 ETKDGv3 38
NCI C72 -5.058 3.666 3.140 ETKDGv3 39
NCI C75 -5.426 4.269 1.788 ETKDGv3 40
NCI H10 7.298 -0.890 -2.003 ETKDGv3 41
NCI H10A 7.827 -2.213 -3.084 ETKDGv3 42
NCI H13 7.431 -3.893 -1.294 ETKDGv3 43
NCI H13A 8.630 -2.681 -0.849 ETKDGv3 44
NCI H18 6.791 -1.785 2.169 ETKDGv3 45
NCI H20 8.898 -0.461 1.999 ETKDGv3 46
NCI H20A 8.973 -0.772 0.241 ETKDGv3 47
NCI H23 6.687 0.309 -0.009 ETKDGv3 48
NCI H23A 6.690 0.646 1.766 ETKDGv3 49
NCI H23B 7.924 1.412 0.697 ETKDGv3 50
NCI H27 9.420 -3.103 1.359 ETKDGv3 51
NCI H27A 8.615 -2.976 2.951 ETKDGv3 52
NCI H30 8.192 -4.974 0.711 ETKDGv3 53
NCI H30A 8.133 -5.206 2.481 ETKDGv3 54
NCI H33 5.904 -4.172 2.608 ETKDGv3 55
NCI H33A 5.883 -5.502 1.407 ETKDGv3 56
NCI H36 4.838 -3.004 0.929 ETKDGv3 57
NCI H36A 5.411 -4.067 -0.358 ETKDGv3 58
NCI HN7 4.910 -0.586 -1.537 ETKDGv3 59
NCI H40 3.593 -3.935 -2.131 ETKDGv3 60
NCI H42 1.136 -4.503 -2.227 ETKDGv3 61
NCI H4 2.563 0.272 -1.968 ETKDGv3 62
NCI H45 -1.280 -3.785 -2.220 ETKDGv3 63
NCI H47 -3.639 -2.987 -2.222 ETKDGv3 64
NCI H49 -5.168 -1.159 -2.131 ETKDGv3 65
NCI H85 -1.988 1.769 -1.890 ETKDGv3 66
NCI HN52 -4.303 2.466 -2.295 ETKDGv3 67
NCI H55 -7.846 2.243 -1.076 ETKDGv3 68
NCI H55A -6.843 2.960 -2.362 ETKDGv3 69
NCI H58 -7.165 4.587 -0.492 ETKDGv3 70
NCI H58A -5.466 4.170 -0.780 ETKDGv3 71
NCI H63 -7.846 1.969 1.211 ETKDGv3 72
NCI H77 -9.616 3.399 2.110 ETKDGv3 73
NCI H77A -9.103 3.826 0.478 ETKDGv3 74
NCI H80 -9.621 5.789 1.909 ETKDGv3 75
NCI H80A -7.949 5.855 1.300 ETKDGv3 76
NCI H80B -8.290 5.379 3.022 ETKDGv3 77
NCI H66 -8.226 2.370 3.726 ETKDGv3 78
NCI H66A -6.815 1.446 3.146 ETKDGv3 79
NCI H69 -6.814 4.321 4.232 ETKDGv3 80
NCI H69A -6.027 2.868 4.895 ETKDGv3 81
NCI H72 -4.483 2.727 2.986 ETKDGv3 82
NCI H72A -4.416 4.378 3.702 ETKDGv3 83
NCI H75 -4.473 4.453 1.245 ETKDGv3 84
NCI H75A -5.918 5.250 1.930 ETKDGv3 85
#