data_ND7
#
_chem_comp.id ND7
_chem_comp.name "5'-O-[(S)-amino(hydroxy)phosphoryl]adenosine"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C10 H15 N6 O6 P'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2019-05-10
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 346.236
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code ND7
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6OM4
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
ND7 O1A O1 O 0 1 N N N N N N -15.742 -5.500 -14.762 -5.162 2.116 -1.302 O1A ND7 1
ND7 PA P1 P 0 1 N N N N N N -15.046 -5.189 -16.056 -4.866 1.015 -0.165 PA ND7 2
ND7 O2A O2 O 0 1 N N N N N N -15.561 -5.865 -17.319 -4.789 1.679 1.156 O2A ND7 3
ND7 N3A N1 N 0 1 N N N N N N -15.203 -3.505 -16.211 -6.104 -0.124 -0.150 N3A ND7 4
ND7 "O5'" O3 O 0 1 N N N N N N -13.491 -5.498 -16.022 -3.467 0.283 -0.479 "O5'" ND7 5
ND7 "C5'" C1 C 0 1 N N N N N N -12.751 -4.927 -14.900 -2.822 -0.594 0.447 "C5'" ND7 6
ND7 "C4'" C2 C 0 1 N N R N N N -11.496 -5.824 -14.747 -1.520 -1.114 -0.165 "C4'" ND7 7
ND7 "C3'" C3 C 0 1 N N S N N N -11.932 -7.186 -14.108 -0.868 -2.161 0.766 "C3'" ND7 8
ND7 "O3'" O4 O 0 1 N N N N N N -11.440 -8.273 -14.791 -1.180 -3.484 0.328 "O3'" ND7 9
ND7 "C2'" C4 C 0 1 N N R N N N -11.457 -6.982 -12.607 0.647 -1.889 0.633 "C2'" ND7 10
ND7 "O2'" O5 O 0 1 N N N N N N -10.993 -8.267 -12.037 1.317 -3.037 0.109 "O2'" ND7 11
ND7 "C1'" C5 C 0 1 N N R N N N -10.410 -6.149 -12.679 0.731 -0.711 -0.362 "C1'" ND7 12
ND7 "O4'" O6 O 0 1 N N N N N N -10.693 -5.188 -13.953 -0.549 -0.050 -0.261 "O4'" ND7 13
ND7 N9 N2 N 0 1 Y N N N N N -10.208 -5.247 -11.581 1.809 0.204 0.021 N9 ND7 14
ND7 C4 C6 C 0 1 Y N N N N N -9.038 -5.055 -10.911 3.134 0.084 -0.315 C4 ND7 15
ND7 C5 C7 C 0 1 Y N N N N N -9.261 -4.114 -9.970 3.784 1.183 0.271 C5 ND7 16
ND7 N7 N3 N 0 1 Y N N N N N -10.551 -3.716 -10.063 2.840 1.904 0.922 N7 ND7 17
ND7 C8 C8 C 0 1 Y N N N N N -11.100 -4.398 -11.049 1.679 1.334 0.771 C8 ND7 18
ND7 N3 N4 N 0 1 Y N N N N N -7.826 -5.632 -11.051 3.848 -0.789 -1.020 N3 ND7 19
ND7 C2 C9 C 0 1 Y N N N N N -6.855 -5.259 -10.273 5.146 -0.628 -1.168 C2 ND7 20
ND7 N1 N5 N 0 1 Y N N N N N -7.050 -4.342 -9.319 5.800 0.389 -0.637 N1 ND7 21
ND7 C6 C10 C 0 1 Y N N N N N -8.207 -3.758 -9.155 5.171 1.311 0.083 C6 ND7 22
ND7 N6 N6 N 0 1 N N N N N N -8.392 -2.766 -8.111 5.865 2.374 0.636 N6 ND7 23
ND7 H1 H1 H 0 1 N N N N N N -16.450 -6.113 -14.922 -5.991 2.598 -1.176 H1 ND7 24
ND7 H2 H2 H 0 1 N N N N N N -14.865 -3.060 -15.382 -6.177 -0.591 -1.041 H2 ND7 25
ND7 H3 H3 H 0 1 N N N N N N -14.671 -3.192 -16.998 -5.975 -0.789 0.598 H3 ND7 26
ND7 H4 H4 H 0 1 N N N N N N -12.460 -3.889 -15.118 -2.600 -0.052 1.366 H4 ND7 27
ND7 H5 H5 H 0 1 N N N N N N -13.358 -4.953 -13.983 -3.480 -1.434 0.671 H5 ND7 28
ND7 H6 H6 H 0 1 N N N N N N -11.063 -6.015 -15.740 -1.710 -1.547 -1.148 H6 ND7 29
ND7 H7 H7 H 0 1 N N N N N N -13.032 -7.211 -14.102 -1.195 -2.011 1.795 H7 ND7 30
ND7 H8 H8 H 0 1 N N N N N N -11.730 -9.072 -14.367 -0.796 -4.181 0.877 H8 ND7 31
ND7 H9 H9 H 0 1 N N N N N N -12.290 -6.574 -12.016 1.070 -1.608 1.598 H9 ND7 32
ND7 H10 H10 H 0 1 N N N N N N -10.712 -8.133 -11.140 1.244 -3.824 0.667 H10 ND7 33
ND7 H11 H11 H 0 1 N N N N N N -9.479 -6.698 -12.883 0.891 -1.081 -1.375 H11 ND7 34
ND7 H12 H12 H 0 1 N N N N N N -12.122 -4.289 -11.381 0.751 1.702 1.183 H12 ND7 35
ND7 H13 H13 H 0 1 N N N N N N -5.875 -5.696 -10.398 5.697 -1.355 -1.747 H13 ND7 36
ND7 H14 H14 H 0 1 N N N N N N -7.536 -2.647 -7.608 5.394 3.040 1.160 H14 ND7 37
ND7 H15 H15 H 0 1 N N N N N N -8.660 -1.895 -8.523 6.822 2.451 0.499 H15 ND7 38
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
ND7 O2A PA DOUB N N 1
ND7 N3A PA SING N N 2
ND7 PA "O5'" SING N N 3
ND7 PA O1A SING N N 4
ND7 "O5'" "C5'" SING N N 5
ND7 "C5'" "C4'" SING N N 6
ND7 "O3'" "C3'" SING N N 7
ND7 "C4'" "C3'" SING N N 8
ND7 "C4'" "O4'" SING N N 9
ND7 "C3'" "C2'" SING N N 10
ND7 "O4'" "C1'" SING N N 11
ND7 "C1'" "C2'" SING N N 12
ND7 "C1'" N9 SING N N 13
ND7 "C2'" "O2'" SING N N 14
ND7 N9 C8 SING Y N 15
ND7 N9 C4 SING Y N 16
ND7 N3 C4 DOUB Y N 17
ND7 N3 C2 SING Y N 18
ND7 C8 N7 DOUB Y N 19
ND7 C4 C5 SING Y N 20
ND7 C2 N1 DOUB Y N 21
ND7 N7 C5 SING Y N 22
ND7 C5 C6 DOUB Y N 23
ND7 N1 C6 SING Y N 24
ND7 C6 N6 SING N N 25
ND7 O1A H1 SING N N 26
ND7 N3A H2 SING N N 27
ND7 N3A H3 SING N N 28
ND7 "C5'" H4 SING N N 29
ND7 "C5'" H5 SING N N 30
ND7 "C4'" H6 SING N N 31
ND7 "C3'" H7 SING N N 32
ND7 "O3'" H8 SING N N 33
ND7 "C2'" H9 SING N N 34
ND7 "O2'" H10 SING N N 35
ND7 "C1'" H11 SING N N 36
ND7 C8 H12 SING N N 37
ND7 C2 H13 SING N N 38
ND7 N6 H14 SING N N 39
ND7 N6 H15 SING N N 40
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
ND7 SMILES ACDLabs 12.01 'OP(OCC3C(C(O)C(n1cnc2c1ncnc2N)O3)O)(=O)N'
ND7 InChI InChI 1.03 'InChI=1S/C10H15N6O6P/c11-8-5-9(14-2-13-8)16(3-15-5)10-7(18)6(17)4(22-10)1-21-23(12,19)20/h2-4,6-7,10,17-18H,1H2,(H2,11,13,14)(H3,12,19,20)/t4-,6-,7-,10-/m1/s1'
ND7 InChIKey InChI 1.03 LDEMREUBLBGZBO-KQYNXXCUSA-N
ND7 SMILES_CANONICAL CACTVS 3.385 'Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](N)(O)=O)[C@@H](O)[C@H]3O'
ND7 SMILES CACTVS 3.385 'Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](N)(O)=O)[CH](O)[CH]3O'
ND7 SMILES_CANONICAL 'OpenEye OEToolkits' 2.0.7 'c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(N)O)O)O)N'
ND7 SMILES 'OpenEye OEToolkits' 2.0.7 'c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(N)O)O)O)N'
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
ND7 'SYSTEMATIC NAME' ACDLabs 12.01 "5'-O-[(S)-amino(hydroxy)phosphoryl]adenosine"
ND7 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 2.0.7 '[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxyphosphonamidic acid'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
ND7 'Create component' 2019-05-10 RCSB
ND7 'Initial release' 2019-05-22 RCSB
ND7 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id ND7
_pdbx_chem_comp_pcm.modified_residue_id ASP
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid backbone'
_pdbx_chem_comp_pcm.polypeptide_position C-terminal
_pdbx_chem_comp_pcm.comp_id_linking_atom N3A
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom C
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
_pdbx_chem_comp_pcm.first_instance_model_db_code 6OM4
#
loop_
_software.name
_software.version
_software.description
rdkit 2023.03.3 'Core functionality.'
pdbeccdutils 0.8.4 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
ND7 O1A O 13.928 4.580 1
ND7 PA P 12.713 3.700 2
ND7 O2A O 13.592 2.486 3
ND7 N3A N 11.833 4.915 4
ND7 "O5'" O 11.498 2.821 5
ND7 "C5'" C 10.129 3.433 6
ND7 "C4'" C 8.913 2.554 7
ND7 "C3'" C 7.487 3.020 8
ND7 "O3'" O 7.027 4.447 9
ND7 "C2'" C 6.604 1.808 10
ND7 "O2'" O 5.104 1.810 11
ND7 "C1'" C 7.483 0.593 12
ND7 "O4'" O 8.911 1.054 13
ND7 N9 N 7.018 -0.833 14
ND7 C4 C 5.598 -1.290 15
ND7 C5 C 5.598 -2.790 16
ND7 N7 N 7.018 -3.247 17
ND7 C8 C 7.893 -2.040 18
ND7 N3 N 4.299 -0.540 19
ND7 C2 C 3.000 -1.290 20
ND7 N1 N 3.000 -2.790 21
ND7 C6 C 4.299 -3.540 22
ND7 N6 N 4.299 -5.040 23
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
ND7 O2A PA DOUBLE NONE 1
ND7 PA N3A SINGLE BEGINWEDGE 2
ND7 PA "O5'" SINGLE NONE 3
ND7 PA O1A SINGLE NONE 4
ND7 "O5'" "C5'" SINGLE NONE 5
ND7 "C4'" "C5'" SINGLE BEGINWEDGE 6
ND7 "C3'" "O3'" SINGLE BEGINDASH 7
ND7 "C4'" "C3'" SINGLE NONE 8
ND7 "C4'" "O4'" SINGLE NONE 9
ND7 "C3'" "C2'" SINGLE NONE 10
ND7 "O4'" "C1'" SINGLE NONE 11
ND7 "C1'" "C2'" SINGLE NONE 12
ND7 "C1'" N9 SINGLE BEGINWEDGE 13
ND7 "C2'" "O2'" SINGLE BEGINDASH 14
ND7 N9 C8 SINGLE NONE 15
ND7 N9 C4 SINGLE NONE 16
ND7 N3 C4 SINGLE NONE 17
ND7 N3 C2 DOUBLE NONE 18
ND7 C8 N7 DOUBLE NONE 19
ND7 C4 C5 DOUBLE NONE 20
ND7 C2 N1 SINGLE NONE 21
ND7 N7 C5 SINGLE NONE 22
ND7 C5 C6 SINGLE NONE 23
ND7 N1 C6 DOUBLE NONE 24
ND7 C6 N6 SINGLE NONE 25
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
ND7 MurckoScaffold S1 scaffold 'c1ncc2ncn([C@H]3CCCO3)c2n1' InChI=1S/C9H10N4O/c1-2-8(14-3-1)13-6-12-7-4-10-5-11-9(7)13/h4-6,8H,1-3H2/t8-/m1/s1 DAKONNSVCLKUJN-MRVPVSSYSA-N
ND7 adenine F1 fragment 'Nc1ncnc2nc[nH]c12' InChI=1S/C5H5N5/c6-4-3-5(9-1-7-3)10-2-8-4/h1-2H,(H3,6,7,8,9,10) GFFGJBXGBJISGV-UHFFFAOYSA-N
ND7 imidazole F2 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
ND7 purine F3 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
ND7 pyrimidine F4 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
ND7 ribose F5 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
ND7 "C4'" S1 1
ND7 "C3'" S1 1
ND7 "C2'" S1 1
ND7 "C1'" S1 1
ND7 "O4'" S1 1
ND7 N9 S1 1
ND7 C4 S1 1
ND7 C5 S1 1
ND7 N7 S1 1
ND7 C8 S1 1
ND7 N3 S1 1
ND7 C2 S1 1
ND7 N1 S1 1
ND7 C6 S1 1
ND7 N1 F1 1
ND7 C6 F1 1
ND7 C5 F1 1
ND7 C4 F1 1
ND7 N3 F1 1
ND7 C2 F1 1
ND7 N9 F1 1
ND7 C8 F1 1
ND7 N7 F1 1
ND7 N6 F1 1
ND7 C4 F2 1
ND7 C5 F2 1
ND7 N7 F2 1
ND7 C8 F2 1
ND7 N9 F2 1
ND7 N7 F3 1
ND7 C8 F3 1
ND7 N9 F3 1
ND7 C4 F3 1
ND7 C5 F3 1
ND7 C6 F3 1
ND7 N1 F3 1
ND7 C2 F3 1
ND7 N3 F3 1
ND7 C5 F4 1
ND7 C4 F4 1
ND7 N3 F4 1
ND7 C2 F4 1
ND7 N1 F4 1
ND7 C6 F4 1
ND7 "C2'" F5 1
ND7 "C3'" F5 1
ND7 "C4'" F5 1
ND7 "O4'" F5 1
ND7 "C1'" F5 1
ND7 "C5'" F5 1
ND7 "O5'" F5 1
ND7 "O3'" F5 1
ND7 "O2'" F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id ND7
_pdbe_chem_comp_rdkit_properties.exactmw 346.079
_pdbe_chem_comp_rdkit_properties.amw 346.240
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 12
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 9
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 11
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 23
_pdbe_chem_comp_rdkit_properties.NumAtoms 38
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 13
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.500
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 5
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 150.386
_pdbe_chem_comp_rdkit_properties.tpsa 191.860
_pdbe_chem_comp_rdkit_properties.CrippenClogP -2.706
_pdbe_chem_comp_rdkit_properties.CrippenMR 72.594
_pdbe_chem_comp_rdkit_properties.chi0v 11.474
_pdbe_chem_comp_rdkit_properties.chi1v 7.000
_pdbe_chem_comp_rdkit_properties.chi2v 2.793
_pdbe_chem_comp_rdkit_properties.chi3v 2.793
_pdbe_chem_comp_rdkit_properties.chi4v 1.772
_pdbe_chem_comp_rdkit_properties.chi0n 25.580
_pdbe_chem_comp_rdkit_properties.chi1n 12.518
_pdbe_chem_comp_rdkit_properties.chi2n 2.471
_pdbe_chem_comp_rdkit_properties.chi3n 2.471
_pdbe_chem_comp_rdkit_properties.chi4n 1.574
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.660
_pdbe_chem_comp_rdkit_properties.kappa1 6.006
_pdbe_chem_comp_rdkit_properties.kappa2 5.761
_pdbe_chem_comp_rdkit_properties.kappa3 3.053
_pdbe_chem_comp_rdkit_properties.Phi 1.504
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
ND7 UniChem ChEMBL CHEMBL583986
ND7 UniChem PDBe ND7
ND7 UniChem 'KEGG LIGAND' C03851
ND7 UniChem ChEBI 16771
ND7 UniChem ZINC ZINC000004096224
ND7 UniChem SureChEMBL SCHEMBL1835414
ND7 UniChem 'PubChem TPHARMA' 14871782
ND7 UniChem PubChem 440142
ND7 UniChem ACTor 6154-31-0
ND7 UniChem Nikkaji J364.507J
ND7 UniChem MetaboLights MTBLC16771
ND7 UniChem BRENDA 10235
ND7 UniChem BRENDA 217945
ND7 UniChem BRENDA 48823
ND7 UniChem BRENDA 5927
ND7 UniChem BRENDA 92291
ND7 UniChem BRENDA 92295
ND7 UniChem 'EPA CompTox Dashboard' DTXSID90210530
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
ND7 O1A 4.847 1.974 1.411 ETKDGv3 1
ND7 PA 4.468 1.531 -0.179 ETKDGv3 2
ND7 O2A 3.666 2.635 -0.831 ETKDGv3 3
ND7 N3A 5.953 1.298 -1.077 ETKDGv3 4
ND7 "O5'" 3.577 0.076 -0.195 ETKDGv3 5
ND7 "C5'" 2.439 0.243 0.618 ETKDGv3 6
ND7 "C4'" 1.588 -1.030 0.570 ETKDGv3 7
ND7 "C3'" 1.079 -1.335 -0.842 ETKDGv3 8
ND7 "O3'" 1.933 -2.180 -1.579 ETKDGv3 9
ND7 "C2'" -0.280 -1.934 -0.589 ETKDGv3 10
ND7 "O2'" -0.190 -3.321 -0.382 ETKDGv3 11
ND7 "C1'" -0.690 -1.237 0.708 ETKDGv3 12
ND7 "O4'" 0.476 -0.888 1.429 ETKDGv3 13
ND7 N9 -1.472 -0.032 0.418 ETKDGv3 14
ND7 C4 -2.796 0.009 -0.084 ETKDGv3 15
ND7 C5 -3.360 1.144 0.229 ETKDGv3 16
ND7 N7 -2.475 1.951 0.997 ETKDGv3 17
ND7 C8 -1.394 1.233 1.095 ETKDGv3 18
ND7 N3 -3.538 -1.072 -0.664 ETKDGv3 19
ND7 C2 -4.808 -0.895 -0.916 ETKDGv3 20
ND7 N1 -5.454 0.361 -0.588 ETKDGv3 21
ND7 C6 -4.790 1.342 -0.038 ETKDGv3 22
ND7 N6 -5.446 2.564 0.298 ETKDGv3 23
ND7 H1 5.349 1.201 1.774 ETKDGv3 24
ND7 H2 6.458 0.503 -0.625 ETKDGv3 25
ND7 H3 5.681 0.977 -2.033 ETKDGv3 26
ND7 H4 1.817 1.101 0.273 ETKDGv3 27
ND7 H5 2.740 0.413 1.676 ETKDGv3 28
ND7 H6 2.201 -1.876 0.953 ETKDGv3 29
ND7 H7 0.940 -0.390 -1.415 ETKDGv3 30
ND7 H8 2.165 -2.966 -1.020 ETKDGv3 31
ND7 H9 -0.966 -1.715 -1.440 ETKDGv3 32
ND7 H10 -1.117 -3.673 -0.422 ETKDGv3 33
ND7 H11 -1.308 -1.915 1.337 ETKDGv3 34
ND7 H12 -0.528 1.560 1.654 ETKDGv3 35
ND7 H13 -5.385 -1.695 -1.359 ETKDGv3 36
ND7 H14 -6.465 2.687 0.105 ETKDGv3 37
ND7 H15 -4.917 3.349 0.737 ETKDGv3 38
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